# Performance on Training Set

## Span Level

| Label | Precision | Recall | F1-score | Support |
| --- | --- | --- | --- | --- |
| DomainMotif | 0.907 | 0.888 | 0.897 | 197 |
| FamilyName | 0.976 | 0.980 | 0.978 | 815 |
| Gene | 0.988 | 0.976 | 0.982 | 2243 |
| macro avg | 0.957 | 0.948 | 0.953 | 3255 |
| weighted avg | 0.980 | 0.972 | 0.976 | 3255 |

## Token Level

| Label | Precision | Recall | F1-score | Support |
| --- | --- | --- | --- | --- |
| O | 0.999 | 1.000 | 0.999 | 45948 |
| B-DomainMotif | 0.974 | 0.949 | 0.961 | 195 |
| I-DomainMotif | 0.996 | 0.989 | 0.993 | 536 |
| B-FamilyName | 0.993 | 0.990 | 0.991 | 816 |
| I-FamilyName | 0.994 | 0.997 | 0.996 | 1829 |
| B-Gene | 0.996 | 0.992 | 0.994 | 2239 |
| I-Gene | 0.999 | 0.998 | 0.998 | 4411 |
| macro avg | 0.993 | 0.988 | 0.990 | 55974 |
| weighted avg | 0.999 | 0.999 | 0.999 | 55974 |


# Performance on Validation Set

## Span Level

| Label | Precision | Recall | F1-score | Support |
| --- | --- | --- | --- | --- |
| DomainMotif | 0.613 | 0.568 | 0.590 | 81 |
| FamilyName | 0.539 | 0.513 | 0.526 | 298 |
| Gene | 0.849 | 0.913 | 0.880 | 768 |
| macro avg | 0.667 | 0.665 | 0.665 | 1147 |
| weighted avg | 0.752 | 0.785 | 0.767 | 1147 |

## Token Level

| Label | Precision | Recall | F1-score | Support |
| --- | --- | --- | --- | --- |
| O | 0.982 | 0.983 | 0.982 | 15288 |
| B-DomainMotif | 0.754 | 0.642 | 0.693 | 81 |
| I-DomainMotif | 0.846 | 0.715 | 0.775 | 207 |
| B-FamilyName | 0.682 | 0.609 | 0.643 | 299 |
| I-FamilyName | 0.757 | 0.666 | 0.708 | 637 |
| B-Gene | 0.872 | 0.938 | 0.904 | 763 |
| I-Gene | 0.886 | 0.938 | 0.912 | 1446 |
| macro avg | 0.826 | 0.784 | 0.803 | 18721 |
| weighted avg | 0.955 | 0.956 | 0.956 | 18721 |


# Performance on Testing Set

## Span Level

| Label | Precision | Recall | F1-score | Support |
| --- | --- | --- | --- | --- |
| DomainMotif | 0.602 | 0.670 | 0.634 | 361 |
| FamilyName | 0.497 | 0.569 | 0.530 | 1250 |
| Gene | 0.856 | 0.923 | 0.888 | 3225 |
| macro avg | 0.651 | 0.721 | 0.684 | 4836 |
| weighted avg | 0.744 | 0.812 | 0.777 | 4836 |

## Token Level

| Label | Precision | Recall | F1-score | Support |
| --- | --- | --- | --- | --- |
| O | 0.987 | 0.973 | 0.980 | 57537 |
| B-DomainMotif | 0.737 | 0.761 | 0.749 | 360 |
| I-DomainMotif | 0.847 | 0.815 | 0.831 | 979 |
| B-FamilyName | 0.619 | 0.674 | 0.645 | 1250 |
| I-FamilyName | 0.625 | 0.706 | 0.663 | 2481 |
| B-Gene | 0.887 | 0.934 | 0.910 | 3231 |
| I-Gene | 0.895 | 0.928 | 0.911 | 6028 |
| macro avg | 0.799 | 0.827 | 0.813 | 71866 |
| weighted avg | 0.953 | 0.950 | 0.951 | 71866 |