Update README.md
Browse files
README.md
CHANGED
@@ -23,15 +23,15 @@ from transformers import pipeline
|
|
23 |
pipe = pipeline(model="InstaDeepAI/ChatNT-text-generation-pipeline", trust_remote_code=True)
|
24 |
|
25 |
# Define custom inputs (note that the number of <DNA> token in the english sequence must be equal to len(dna_sequences))
|
26 |
-
english_sequence = "
|
27 |
dna_sequences = ["ATCGGAAAAAGATCCAGAAAGTTATACCAGGCCAATGGGAATCACCTATTACGTGGATAATAGCGATAGTATGTTACCTATAAATTTAACTACGTGGATATCAGGCAGTTACGTTACCAGTCAAGGAGCACCCAAAACTGTCCAGCAACAAGTTAATTTACCCATGAAGATGTACTGCAAGCCTTGCCAACCAGTTAAAGTAGCTACTCATAAGGTAATAAACAGTAATATCGACTTTTTATCCATTTTGATAATTGATTTATAACAGTCTATAACTGATCGCTCTACATAATCTCTATCAGATTACTATTGACACAAACAGAAACCCCGTTAATTTGTATGATATATTTCCCGGTAAGCTTCGATTTTTAATCCTATCGTGACAATTTGGAATGTAACTTATTTCGTATAGGATAAACTAATTTACACGTTTGAATTCCTAGAATATGGAGAATCTAAAGGTCCTGGCAATGCCATCGGCTTTCAATATTATAATGGACCAAAAGTTACTCTATTAGCTTCCAAAACTTCGCGTGAGTACATTAGAACAGAAGAATAACCTTCAATATCGAGAGAGTTACTATCACTAACTATCCTATG"]
|
28 |
|
29 |
# Generate sequence
|
30 |
generated_english_sequence = pipe(
|
31 |
-
|
32 |
-
|
33 |
-
|
34 |
-
|
35 |
)
|
36 |
```
|
37 |
|
|
|
23 |
pipe = pipeline(model="InstaDeepAI/ChatNT-text-generation-pipeline", trust_remote_code=True)
|
24 |
|
25 |
# Define custom inputs (note that the number of <DNA> token in the english sequence must be equal to len(dna_sequences))
|
26 |
+
english_sequence = "Is there any evidence of an acceptor splice site in this sequence <DNA> ?"
|
27 |
dna_sequences = ["ATCGGAAAAAGATCCAGAAAGTTATACCAGGCCAATGGGAATCACCTATTACGTGGATAATAGCGATAGTATGTTACCTATAAATTTAACTACGTGGATATCAGGCAGTTACGTTACCAGTCAAGGAGCACCCAAAACTGTCCAGCAACAAGTTAATTTACCCATGAAGATGTACTGCAAGCCTTGCCAACCAGTTAAAGTAGCTACTCATAAGGTAATAAACAGTAATATCGACTTTTTATCCATTTTGATAATTGATTTATAACAGTCTATAACTGATCGCTCTACATAATCTCTATCAGATTACTATTGACACAAACAGAAACCCCGTTAATTTGTATGATATATTTCCCGGTAAGCTTCGATTTTTAATCCTATCGTGACAATTTGGAATGTAACTTATTTCGTATAGGATAAACTAATTTACACGTTTGAATTCCTAGAATATGGAGAATCTAAAGGTCCTGGCAATGCCATCGGCTTTCAATATTATAATGGACCAAAAGTTACTCTATTAGCTTCCAAAACTTCGCGTGAGTACATTAGAACAGAAGAATAACCTTCAATATCGAGAGAGTTACTATCACTAACTATCCTATG"]
|
28 |
|
29 |
# Generate sequence
|
30 |
generated_english_sequence = pipe(
|
31 |
+
inputs={
|
32 |
+
"english_sequence": english_sequence,
|
33 |
+
"dna_sequences": dna_sequences
|
34 |
+
}
|
35 |
)
|
36 |
```
|
37 |
|