Training in progress, epoch 1
Browse files- .gitignore +1 -0
- config.json +279 -0
- pytorch_model.bin +3 -0
- special_tokens_map.json +7 -0
- tokenizer.json +0 -0
- tokenizer_config.json +15 -0
- training_args.bin +3 -0
- vocab.txt +0 -0
.gitignore
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
checkpoint-*/
|
config.json
ADDED
|
@@ -0,0 +1,279 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"_name_or_path": "michiyasunaga/BioLinkBERT-large",
|
| 3 |
+
"architectures": [
|
| 4 |
+
"BertForSequenceClassification"
|
| 5 |
+
],
|
| 6 |
+
"attention_probs_dropout_prob": 0.1,
|
| 7 |
+
"classifier_dropout": null,
|
| 8 |
+
"gradient_checkpointing": false,
|
| 9 |
+
"hidden_act": "gelu",
|
| 10 |
+
"hidden_dropout_prob": 0.1,
|
| 11 |
+
"hidden_size": 1024,
|
| 12 |
+
"id2label": {
|
| 13 |
+
"0": "T001",
|
| 14 |
+
"1": "T002",
|
| 15 |
+
"2": "T004",
|
| 16 |
+
"3": "T005",
|
| 17 |
+
"4": "T007",
|
| 18 |
+
"5": "T008",
|
| 19 |
+
"6": "T010",
|
| 20 |
+
"7": "T011",
|
| 21 |
+
"8": "T012",
|
| 22 |
+
"9": "T013",
|
| 23 |
+
"10": "T014",
|
| 24 |
+
"11": "T015",
|
| 25 |
+
"12": "T016",
|
| 26 |
+
"13": "T017",
|
| 27 |
+
"14": "T018",
|
| 28 |
+
"15": "T019",
|
| 29 |
+
"16": "T020",
|
| 30 |
+
"17": "T022",
|
| 31 |
+
"18": "T023",
|
| 32 |
+
"19": "T024",
|
| 33 |
+
"20": "T025",
|
| 34 |
+
"21": "T026",
|
| 35 |
+
"22": "T028",
|
| 36 |
+
"23": "T029",
|
| 37 |
+
"24": "T030",
|
| 38 |
+
"25": "T031",
|
| 39 |
+
"26": "T032",
|
| 40 |
+
"27": "T033",
|
| 41 |
+
"28": "T034",
|
| 42 |
+
"29": "T037",
|
| 43 |
+
"30": "T038",
|
| 44 |
+
"31": "T039",
|
| 45 |
+
"32": "T040",
|
| 46 |
+
"33": "T041",
|
| 47 |
+
"34": "T042",
|
| 48 |
+
"35": "T043",
|
| 49 |
+
"36": "T044",
|
| 50 |
+
"37": "T045",
|
| 51 |
+
"38": "T046",
|
| 52 |
+
"39": "T047",
|
| 53 |
+
"40": "T048",
|
| 54 |
+
"41": "T049",
|
| 55 |
+
"42": "T050",
|
| 56 |
+
"43": "T051",
|
| 57 |
+
"44": "T052",
|
| 58 |
+
"45": "T053",
|
| 59 |
+
"46": "T054",
|
| 60 |
+
"47": "T055",
|
| 61 |
+
"48": "T056",
|
| 62 |
+
"49": "T057",
|
| 63 |
+
"50": "T058",
|
| 64 |
+
"51": "T059",
|
| 65 |
+
"52": "T060",
|
| 66 |
+
"53": "T061",
|
| 67 |
+
"54": "T062",
|
| 68 |
+
"55": "T063",
|
| 69 |
+
"56": "T064",
|
| 70 |
+
"57": "T065",
|
| 71 |
+
"58": "T066",
|
| 72 |
+
"59": "T067",
|
| 73 |
+
"60": "T068",
|
| 74 |
+
"61": "T069",
|
| 75 |
+
"62": "T070",
|
| 76 |
+
"63": "T071",
|
| 77 |
+
"64": "T072",
|
| 78 |
+
"65": "T073",
|
| 79 |
+
"66": "T074",
|
| 80 |
+
"67": "T075",
|
| 81 |
+
"68": "T077",
|
| 82 |
+
"69": "T078",
|
| 83 |
+
"70": "T079",
|
| 84 |
+
"71": "T080",
|
| 85 |
+
"72": "T081",
|
| 86 |
+
"73": "T082",
|
| 87 |
+
"74": "T083",
|
| 88 |
+
"75": "T085",
|
| 89 |
+
"76": "T086",
|
| 90 |
+
"77": "T087",
|
| 91 |
+
"78": "T089",
|
| 92 |
+
"79": "T090",
|
| 93 |
+
"80": "T091",
|
| 94 |
+
"81": "T092",
|
| 95 |
+
"82": "T093",
|
| 96 |
+
"83": "T094",
|
| 97 |
+
"84": "T095",
|
| 98 |
+
"85": "T096",
|
| 99 |
+
"86": "T097",
|
| 100 |
+
"87": "T098",
|
| 101 |
+
"88": "T099",
|
| 102 |
+
"89": "T100",
|
| 103 |
+
"90": "T101",
|
| 104 |
+
"91": "T102",
|
| 105 |
+
"92": "T103",
|
| 106 |
+
"93": "T104",
|
| 107 |
+
"94": "T109",
|
| 108 |
+
"95": "T114",
|
| 109 |
+
"96": "T116",
|
| 110 |
+
"97": "T120",
|
| 111 |
+
"98": "T121",
|
| 112 |
+
"99": "T122",
|
| 113 |
+
"100": "T123",
|
| 114 |
+
"101": "T125",
|
| 115 |
+
"102": "T126",
|
| 116 |
+
"103": "T127",
|
| 117 |
+
"104": "T129",
|
| 118 |
+
"105": "T130",
|
| 119 |
+
"106": "T131",
|
| 120 |
+
"107": "T167",
|
| 121 |
+
"108": "T168",
|
| 122 |
+
"109": "T169",
|
| 123 |
+
"110": "T170",
|
| 124 |
+
"111": "T171",
|
| 125 |
+
"112": "T184",
|
| 126 |
+
"113": "T185",
|
| 127 |
+
"114": "T190",
|
| 128 |
+
"115": "T191",
|
| 129 |
+
"116": "T192",
|
| 130 |
+
"117": "T194",
|
| 131 |
+
"118": "T195",
|
| 132 |
+
"119": "T196",
|
| 133 |
+
"120": "T197",
|
| 134 |
+
"121": "T200",
|
| 135 |
+
"122": "T201",
|
| 136 |
+
"123": "T204"
|
| 137 |
+
},
|
| 138 |
+
"initializer_range": 0.02,
|
| 139 |
+
"intermediate_size": 4096,
|
| 140 |
+
"label2id": {
|
| 141 |
+
"T001": 0,
|
| 142 |
+
"T002": 1,
|
| 143 |
+
"T004": 2,
|
| 144 |
+
"T005": 3,
|
| 145 |
+
"T007": 4,
|
| 146 |
+
"T008": 5,
|
| 147 |
+
"T010": 6,
|
| 148 |
+
"T011": 7,
|
| 149 |
+
"T012": 8,
|
| 150 |
+
"T013": 9,
|
| 151 |
+
"T014": 10,
|
| 152 |
+
"T015": 11,
|
| 153 |
+
"T016": 12,
|
| 154 |
+
"T017": 13,
|
| 155 |
+
"T018": 14,
|
| 156 |
+
"T019": 15,
|
| 157 |
+
"T020": 16,
|
| 158 |
+
"T022": 17,
|
| 159 |
+
"T023": 18,
|
| 160 |
+
"T024": 19,
|
| 161 |
+
"T025": 20,
|
| 162 |
+
"T026": 21,
|
| 163 |
+
"T028": 22,
|
| 164 |
+
"T029": 23,
|
| 165 |
+
"T030": 24,
|
| 166 |
+
"T031": 25,
|
| 167 |
+
"T032": 26,
|
| 168 |
+
"T033": 27,
|
| 169 |
+
"T034": 28,
|
| 170 |
+
"T037": 29,
|
| 171 |
+
"T038": 30,
|
| 172 |
+
"T039": 31,
|
| 173 |
+
"T040": 32,
|
| 174 |
+
"T041": 33,
|
| 175 |
+
"T042": 34,
|
| 176 |
+
"T043": 35,
|
| 177 |
+
"T044": 36,
|
| 178 |
+
"T045": 37,
|
| 179 |
+
"T046": 38,
|
| 180 |
+
"T047": 39,
|
| 181 |
+
"T048": 40,
|
| 182 |
+
"T049": 41,
|
| 183 |
+
"T050": 42,
|
| 184 |
+
"T051": 43,
|
| 185 |
+
"T052": 44,
|
| 186 |
+
"T053": 45,
|
| 187 |
+
"T054": 46,
|
| 188 |
+
"T055": 47,
|
| 189 |
+
"T056": 48,
|
| 190 |
+
"T057": 49,
|
| 191 |
+
"T058": 50,
|
| 192 |
+
"T059": 51,
|
| 193 |
+
"T060": 52,
|
| 194 |
+
"T061": 53,
|
| 195 |
+
"T062": 54,
|
| 196 |
+
"T063": 55,
|
| 197 |
+
"T064": 56,
|
| 198 |
+
"T065": 57,
|
| 199 |
+
"T066": 58,
|
| 200 |
+
"T067": 59,
|
| 201 |
+
"T068": 60,
|
| 202 |
+
"T069": 61,
|
| 203 |
+
"T070": 62,
|
| 204 |
+
"T071": 63,
|
| 205 |
+
"T072": 64,
|
| 206 |
+
"T073": 65,
|
| 207 |
+
"T074": 66,
|
| 208 |
+
"T075": 67,
|
| 209 |
+
"T077": 68,
|
| 210 |
+
"T078": 69,
|
| 211 |
+
"T079": 70,
|
| 212 |
+
"T080": 71,
|
| 213 |
+
"T081": 72,
|
| 214 |
+
"T082": 73,
|
| 215 |
+
"T083": 74,
|
| 216 |
+
"T085": 75,
|
| 217 |
+
"T086": 76,
|
| 218 |
+
"T087": 77,
|
| 219 |
+
"T089": 78,
|
| 220 |
+
"T090": 79,
|
| 221 |
+
"T091": 80,
|
| 222 |
+
"T092": 81,
|
| 223 |
+
"T093": 82,
|
| 224 |
+
"T094": 83,
|
| 225 |
+
"T095": 84,
|
| 226 |
+
"T096": 85,
|
| 227 |
+
"T097": 86,
|
| 228 |
+
"T098": 87,
|
| 229 |
+
"T099": 88,
|
| 230 |
+
"T100": 89,
|
| 231 |
+
"T101": 90,
|
| 232 |
+
"T102": 91,
|
| 233 |
+
"T103": 92,
|
| 234 |
+
"T104": 93,
|
| 235 |
+
"T109": 94,
|
| 236 |
+
"T114": 95,
|
| 237 |
+
"T116": 96,
|
| 238 |
+
"T120": 97,
|
| 239 |
+
"T121": 98,
|
| 240 |
+
"T122": 99,
|
| 241 |
+
"T123": 100,
|
| 242 |
+
"T125": 101,
|
| 243 |
+
"T126": 102,
|
| 244 |
+
"T127": 103,
|
| 245 |
+
"T129": 104,
|
| 246 |
+
"T130": 105,
|
| 247 |
+
"T131": 106,
|
| 248 |
+
"T167": 107,
|
| 249 |
+
"T168": 108,
|
| 250 |
+
"T169": 109,
|
| 251 |
+
"T170": 110,
|
| 252 |
+
"T171": 111,
|
| 253 |
+
"T184": 112,
|
| 254 |
+
"T185": 113,
|
| 255 |
+
"T190": 114,
|
| 256 |
+
"T191": 115,
|
| 257 |
+
"T192": 116,
|
| 258 |
+
"T194": 117,
|
| 259 |
+
"T195": 118,
|
| 260 |
+
"T196": 119,
|
| 261 |
+
"T197": 120,
|
| 262 |
+
"T200": 121,
|
| 263 |
+
"T201": 122,
|
| 264 |
+
"T204": 123
|
| 265 |
+
},
|
| 266 |
+
"layer_norm_eps": 1e-12,
|
| 267 |
+
"max_position_embeddings": 512,
|
| 268 |
+
"model_type": "bert",
|
| 269 |
+
"num_attention_heads": 16,
|
| 270 |
+
"num_hidden_layers": 24,
|
| 271 |
+
"pad_token_id": 0,
|
| 272 |
+
"position_embedding_type": "absolute",
|
| 273 |
+
"problem_type": "multi_label_classification",
|
| 274 |
+
"torch_dtype": "float32",
|
| 275 |
+
"transformers_version": "4.23.1",
|
| 276 |
+
"type_vocab_size": 2,
|
| 277 |
+
"use_cache": true,
|
| 278 |
+
"vocab_size": 28895
|
| 279 |
+
}
|
pytorch_model.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:8ebe920ab0884e67fdc2c988d2c6935991ee4798826f6a88ce3bd445e3198874
|
| 3 |
+
size 1334550581
|
special_tokens_map.json
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"cls_token": "[CLS]",
|
| 3 |
+
"mask_token": "[MASK]",
|
| 4 |
+
"pad_token": "[PAD]",
|
| 5 |
+
"sep_token": "[SEP]",
|
| 6 |
+
"unk_token": "[UNK]"
|
| 7 |
+
}
|
tokenizer.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
tokenizer_config.json
ADDED
|
@@ -0,0 +1,15 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"cls_token": "[CLS]",
|
| 3 |
+
"do_basic_tokenize": true,
|
| 4 |
+
"do_lower_case": true,
|
| 5 |
+
"mask_token": "[MASK]",
|
| 6 |
+
"name_or_path": "michiyasunaga/BioLinkBERT-large",
|
| 7 |
+
"never_split": null,
|
| 8 |
+
"pad_token": "[PAD]",
|
| 9 |
+
"sep_token": "[SEP]",
|
| 10 |
+
"special_tokens_map_file": null,
|
| 11 |
+
"strip_accents": null,
|
| 12 |
+
"tokenize_chinese_chars": true,
|
| 13 |
+
"tokenizer_class": "BertTokenizer",
|
| 14 |
+
"unk_token": "[UNK]"
|
| 15 |
+
}
|
training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:37eb37b3f1f9d635d70868bf48d25a1d65477fdc9c8542e89ad906b4f434329b
|
| 3 |
+
size 3451
|
vocab.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|