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README.md

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+
+---
+
+language:
+- en
+license: llama2
+tags:
+- biology
+- medical
+datasets:
+- EleutherAI/pile
+- Open-Orca/OpenOrca
+- GAIR/lima
+- WizardLM/WizardLM_evol_instruct_V2_196k
+metrics:
+- accuracy
+pipeline_tag: text-generation
+model-index:
+- name: medicine-chat
+  results:
+  - task:
+      type: text-generation
+      name: Text Generation
+    dataset:
+      name: AI2 Reasoning Challenge (25-Shot)
+      type: ai2_arc
+      config: ARC-Challenge
+      split: test
+      args:
+        num_few_shot: 25
+    metrics:
+    - type: acc_norm
+      value: 53.75
+      name: normalized accuracy
+    source:
+      url: https://huggingface.co/spaces/HuggingFaceH4/open_llm_leaderboard?query=AdaptLLM/medicine-chat
+      name: Open LLM Leaderboard
+  - task:
+      type: text-generation
+      name: Text Generation
+    dataset:
+      name: HellaSwag (10-Shot)
+      type: hellaswag
+      split: validation
+      args:
+        num_few_shot: 10
+    metrics:
+    - type: acc_norm
+      value: 76.11
+      name: normalized accuracy
+    source:
+      url: https://huggingface.co/spaces/HuggingFaceH4/open_llm_leaderboard?query=AdaptLLM/medicine-chat
+      name: Open LLM Leaderboard
+  - task:
+      type: text-generation
+      name: Text Generation
+    dataset:
+      name: MMLU (5-Shot)
+      type: cais/mmlu
+      config: all
+      split: test
+      args:
+        num_few_shot: 5
+    metrics:
+    - type: acc
+      value: 49.98
+      name: accuracy
+    source:
+      url: https://huggingface.co/spaces/HuggingFaceH4/open_llm_leaderboard?query=AdaptLLM/medicine-chat
+      name: Open LLM Leaderboard
+  - task:
+      type: text-generation
+      name: Text Generation
+    dataset:
+      name: TruthfulQA (0-shot)
+      type: truthful_qa
+      config: multiple_choice
+      split: validation
+      args:
+        num_few_shot: 0
+    metrics:
+    - type: mc2
+      value: 43.46
+    source:
+      url: https://huggingface.co/spaces/HuggingFaceH4/open_llm_leaderboard?query=AdaptLLM/medicine-chat
+      name: Open LLM Leaderboard
+  - task:
+      type: text-generation
+      name: Text Generation
+    dataset:
+      name: Winogrande (5-shot)
+      type: winogrande
+      config: winogrande_xl
+      split: validation
+      args:
+        num_few_shot: 5
+    metrics:
+    - type: acc
+      value: 75.69
+      name: accuracy
+    source:
+      url: https://huggingface.co/spaces/HuggingFaceH4/open_llm_leaderboard?query=AdaptLLM/medicine-chat
+      name: Open LLM Leaderboard
+  - task:
+      type: text-generation
+      name: Text Generation
+    dataset:
+      name: GSM8k (5-shot)
+      type: gsm8k
+      config: main
+      split: test
+      args:
+        num_few_shot: 5
+    metrics:
+    - type: acc
+      value: 18.95
+      name: accuracy
+    source:
+      url: https://huggingface.co/spaces/HuggingFaceH4/open_llm_leaderboard?query=AdaptLLM/medicine-chat
+      name: Open LLM Leaderboard
+
+---
+
+[![QuantFactory Banner](https://lh7-rt.googleusercontent.com/docsz/AD_4nXeiuCm7c8lEwEJuRey9kiVZsRn2W-b4pWlu3-X534V3YmVuVc2ZL-NXg2RkzSOOS2JXGHutDuyyNAUtdJI65jGTo8jT9Y99tMi4H4MqL44Uc5QKG77B0d6-JfIkZHFaUA71-RtjyYZWVIhqsNZcx8-OMaA?key=xt3VSDoCbmTY7o-cwwOFwQ)](https://hf.co/QuantFactory)
+
+
+# QuantFactory/medicine-chat-GGUF
+This is quantized version of [AdaptLLM/medicine-chat](https://huggingface.co/AdaptLLM/medicine-chat) created using llama.cpp
+
+# Original Model Card
+
+
+# Adapting LLMs to Domains via Continual Pre-Training (ICLR 2024)
+This repo contains the domain-specific chat model developed from **LLaMA-2-Chat-7B**, using the method in our paper [Adapting Large Language Models via Reading Comprehension](https://huggingface.co/papers/2309.09530).
+
+We explore **continued pre-training on domain-specific corpora** for large language models. While this approach enriches LLMs with domain knowledge, it significantly hurts their prompting ability for question answering. Inspired by human learning via reading comprehension, we propose a simple method to **transform large-scale pre-training corpora into reading comprehension texts**, consistently improving prompting performance across tasks in biomedicine, finance, and law domains. **Our 7B model competes with much larger domain-specific models like BloombergGPT-50B**. 
+
+### [2024/11/29] 🤗 Introduce the multimodal version of AdaptLLM at [AdaMLLM](https://huggingface.co/papers/2411.19930), for adapting MLLMs to domains 🤗
+
+**************************** **Updates** ****************************
+* 2024/11/29: Released [AdaMLLM](https://huggingface.co/AdaptLLM/Adapt-MLLM-to-Domains) for adapting MLLMs to domains
+* 2024/9/20: Our [research paper for Instruction-Pretrain](https://huggingface.co/papers/2406.14491) has been accepted by EMNLP 2024
+* 2024/8/29: Updated [guidelines](https://huggingface.co/datasets/AdaptLLM/finance-tasks) on evaluating any 🤗Huggingface models on the domain-specific tasks
+* 2024/6/22: Released the [benchmarking code](https://github.com/microsoft/LMOps/tree/main/adaptllm)
+* 2024/6/21: Released the general version of AdaptLLM at [Instruction-Pretrain](https://huggingface.co/instruction-pretrain)
+* 2024/4/2: Released the [raw data splits (train and test)](https://huggingface.co/datasets/AdaptLLM/ConvFinQA) of all the evaluation datasets
+* 2024/1/16: Our [research paper for AdaptLLM](https://huggingface.co/papers/2309.09530) has been accepted by ICLR 2024
+* 2023/12/19: Released our [13B base models](https://huggingface.co/AdaptLLM/law-LLM-13B) developed from LLaMA-1-13B
+* 2023/12/8: Released our [chat models](https://huggingface.co/AdaptLLM/law-chat) developed from LLaMA-2-Chat-7B
+* 2023/9/18: Released our [paper](https://huggingface.co/papers/2309.09530), [code](https://github.com/microsoft/LMOps), [data](https://huggingface.co/datasets/AdaptLLM/law-tasks), and [base models](https://huggingface.co/AdaptLLM/law-LLM) developed from LLaMA-1-7B
+
+
+## 1. Domain-Specific Models
+### LLaMA-1-7B
+In our paper, we develop three domain-specific models from LLaMA-1-7B, which are also available in Huggingface: [Biomedicine-LLM](https://huggingface.co/AdaptLLM/medicine-LLM), [Finance-LLM](https://huggingface.co/AdaptLLM/finance-LLM) and [Law-LLM](https://huggingface.co/AdaptLLM/law-LLM), the performances of our AdaptLLM compared to other domain-specific LLMs are:
+
+<p align='center'>
+    <img src="https://cdn-uploads.huggingface.co/production/uploads/650801ced5578ef7e20b33d4/6efPwitFgy-pLTzvccdcP.png" width="700">
+</p>
+
+### LLaMA-1-13B
+Moreover, we scale up our base model to LLaMA-1-13B to see if **our method is similarly effective for larger-scale models**, and the results are consistently positive too: [Biomedicine-LLM-13B](https://huggingface.co/AdaptLLM/medicine-LLM-13B), [Finance-LLM-13B](https://huggingface.co/AdaptLLM/finance-LLM-13B) and [Law-LLM-13B](https://huggingface.co/AdaptLLM/law-LLM-13B).
+
+### LLaMA-2-Chat
+Our method is also effective for aligned models! LLaMA-2-Chat requires a [specific data format](https://huggingface.co/blog/llama2#how-to-prompt-llama-2), and our **reading comprehension can perfectly fit the data format** by transforming the reading comprehension into a multi-turn conversation. We have also open-sourced chat models in different domains: [Biomedicine-Chat](https://huggingface.co/AdaptLLM/medicine-chat), [Finance-Chat](https://huggingface.co/AdaptLLM/finance-chat) and [Law-Chat](https://huggingface.co/AdaptLLM/law-chat)
+
+For example, to chat with the biomedicine-chat model:
+```python
+from transformers import AutoModelForCausalLM, AutoTokenizer
+
+model = AutoModelForCausalLM.from_pretrained("AdaptLLM/medicine-chat")
+tokenizer = AutoTokenizer.from_pretrained("AdaptLLM/medicine-chat")
+
+# Put your input here:
+user_input = '''Question: Which of the following is an example of monosomy?
+Options:
+- 46,XX
+- 47,XXX
+- 69,XYY
+- 45,X
+
+Please provide your choice first and then provide explanations if possible.'''
+
+# Apply the prompt template and system prompt of LLaMA-2-Chat demo for chat models (NOTE: NO prompt template is required for base models!)
+our_system_prompt = "\nYou are a helpful, respectful and honest assistant. Always answer as helpfully as possible, while being safe.  Your answers should not include any harmful, unethical, racist, sexist, toxic, dangerous, or illegal content. Please ensure that your responses are socially unbiased and positive in nature.\n\nIf a question does not make any sense, or is not factually coherent, explain why instead of answering something not correct. If you don't know the answer to a question, please don't share false information.\n" # Please do NOT change this
+prompt = f"<s>[INST] <<SYS>>{our_system_prompt}<</SYS>>\n\n{user_input} [/INST]"
+
+# # NOTE:
+# # If you want to apply your own system prompt, please integrate it into the instruction part following our system prompt like this:
+# your_system_prompt = "Please, answer this question faithfully."
+# prompt = f"<s>[INST] <<SYS>>{our_system_prompt}<</SYS>>\n\n{your_system_prompt}\n{user_input} [/INST]"
+
+inputs = tokenizer(prompt, return_tensors="pt", add_special_tokens=False).input_ids.to(model.device)
+outputs = model.generate(input_ids=inputs, max_length=4096)[0]
+
+answer_start = int(inputs.shape[-1])
+pred = tokenizer.decode(outputs[answer_start:], skip_special_tokens=True)
+
+print(pred)
+```
+
+### LLaMA-3-8B (💡New!)
+In our recent research on [Instruction-Pretrain](https://huggingface.co/papers/2406.14491), we developed a context-based instruction synthesizer to augment the raw corpora with instruction-response pairs, **enabling Llama3-8B to be comparable to or even outperform Llama3-70B**: [Finance-Llama3-8B](https://huggingface.co/instruction-pretrain/finance-Llama3-8B), [Biomedicine-Llama3-8B](https://huggingface.co/instruction-pretrain/medicine-Llama3-8B).
+
+## 2. Domain-Specific Tasks
+To easily reproduce our prompting results, we have uploaded the filled-in zero/few-shot input instructions and output completions of the test each domain-specific task: [biomedicine-tasks](https://huggingface.co/datasets/AdaptLLM/medicine-tasks), [finance-tasks](https://huggingface.co/datasets/AdaptLLM/finance-tasks), and [law-tasks](https://huggingface.co/datasets/AdaptLLM/law-tasks).
+
+Note: those filled-in instructions are specifically tailored for models before alignment and do NOT fit for the specific data format required for chat models.
+
+
+## [Open LLM Leaderboard Evaluation Results](https://huggingface.co/spaces/HuggingFaceH4/open_llm_leaderboard)
+Detailed results can be found [here](https://huggingface.co/datasets/open-llm-leaderboard/details_AdaptLLM__medicine-chat)
+
+|             Metric              |Value|
+|---------------------------------|----:|
+|Avg.                             |52.99|
+|AI2 Reasoning Challenge (25-Shot)|53.75|
+|HellaSwag (10-Shot)              |76.11|
+|MMLU (5-Shot)                    |49.98|
+|TruthfulQA (0-shot)              |43.46|
+|Winogrande (5-shot)              |75.69|
+|GSM8k (5-shot)                   |18.95|
+
+## Citation
+If you find our work helpful, please cite us:
+```bibtex
+@inproceedings{
+cheng2024adapting,
+title={Adapting Large Language Models via Reading Comprehension},
+author={Daixuan Cheng and Shaohan Huang and Furu Wei},
+booktitle={The Twelfth International Conference on Learning Representations},
+year={2024},
+url={https://openreview.net/forum?id=y886UXPEZ0}
+}
+```