Added relevant models.
Browse files- superunet_fold0/config.json +116 -0
- superunet_fold0/model_best_0.801.pt +3 -0
- superunet_fold0/model_last.pt +3 -0
- superunet_fold0_crop96/config.json +116 -0
- superunet_fold0_crop96/model_best_0.802.pt +3 -0
- superunet_fold0_crop96/model_last.pt +3 -0
- superunet_fold0_doppler/config.json +117 -0
- superunet_fold0_doppler/model_best_0.804.pt +3 -0
- superunet_fold0_doppler/model_last.pt +3 -0
- superunet_fold0_intaug/config.json +117 -0
- superunet_fold0_intaug/model_best_0.797.pt +3 -0
- superunet_fold0_intaug/model_last.pt +3 -0
- superunet_fold0_pre/config.json +117 -0
- superunet_fold0_pre/model_best_0.805.pt +3 -0
- superunet_fold0_pre/model_last.pt +3 -0
- superunet_fold1_pre/config.json +117 -0
- superunet_fold1_pre/model_best_0.762.pt +3 -0
- superunet_fold1_pre/model_last.pt +3 -0
- superunet_fold2_pre/config.json +117 -0
- superunet_fold2_pre/model_best_0.836.pt +3 -0
- superunet_fold2_pre/model_last.pt +3 -0
- superunet_fold3_pre/config.json +117 -0
- superunet_fold3_pre/model_best_0.851.pt +3 -0
- superunet_fold3_pre/model_last.pt +3 -0
- superunet_fold4_pre/config.json +117 -0
- superunet_fold4_pre/model_best_0.814.pt +3 -0
- superunet_fold4_pre/model_last.pt +3 -0
- superunet_fold5_pre/config.json +117 -0
- superunet_fold5_pre/model_best_0.841.pt +3 -0
- superunet_fold5_pre/model_last.pt +3 -0
superunet_fold0/config.json
ADDED
@@ -0,0 +1,116 @@
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{
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"sim_data": "/home/bwittm/share/synthetic_cerebral_octa",
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"sim_data_version": "b421",
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"annotations": "/home/bwittm/share/manual_annotations",
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"test_imgs": [
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"m4_0"
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],
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"val_imgs": [
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"m4_0"
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],
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"train_on_real": true,
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"train_img": [
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"m4_1",
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"m44_0",
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"m44_1",
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"m78_0",
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"m78_1"
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],
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"experiment_name": "superunet_fold0_test_moreparams",
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"device": "cuda:0",
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"store_ckpt": true,
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"epochs": 400,
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"epochs_decay": 50,
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"val_interval": 1,
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"itera_pro_epoch": 50000,
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"seed": 0,
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"batch_size": 32,
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"num_workers": 16,
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"sliding_window_overlap": 0.5,
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"sliding_window_mode": "constant",
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"threshold": 0.5,
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"seg": {
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"lr": "1e-5",
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"channels": [
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64,
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128,
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256,
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512,
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1024
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],
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"strides": [
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2,
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2,
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2,
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2
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],
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"activation": "LEAKYRELU",
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"normalization": "BATCH",
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"dropout": 0.3,
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"max_norm_clip": 1.0,
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"cldice": false,
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"iter": 15,
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"alpha": 0.1,
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"smooth": 1
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},
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"augmentation": {
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"patch_size": [
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64,
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64,
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64
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],
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"use_augmentation": true,
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"p_gaussian_noise": 0.5,
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+
"p_gaussian_smooth": 0.5,
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"p_intensity_scale": 0,
|
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"p_intensity_shift": 0,
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"p_adjust_contrast": 0,
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"p_histogram_shift": 0.5,
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"p_rotate": 0.5,
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"p_zoom": 0.5,
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"p_shear": 0,
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"p_flip": [
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0,
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0.5,
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0.5
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],
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"gaussian_noise_mean": 0.0,
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"gaussian_noise_std": 0.01,
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"gaussian_smooth_sigma": [
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0.0,
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0.5
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],
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"intensity_scale_factors": [
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-0.5,
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1.2
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],
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"intensity_shift_offsets": [
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0.05,
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0.2
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],
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"adjust_contrast_gamma": [
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0.7,
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1.3
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],
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"control_points": [
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5,
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10
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],
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"rotation": [
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-90,
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90
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],
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"min_zoom": 1.0,
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"max_zoom": 1.2,
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"shear_range": [
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0.1,
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0.1,
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0.1
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]
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},
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"git_commit_hash": "7a8f7f7",
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"python_version": "3.8.19 | packaged by conda-forge | (default, Mar 20 2024, 12:47:35) ",
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113 |
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"gcc_version": "[GCC 12.3.0]",
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114 |
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"pytorch_version": "1.13.1+cu116",
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"host_name": "u20-computeibmgpu-vesta13"
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}
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superunet_fold0/model_best_0.801.pt
ADDED
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:7f6079a1cbb9025b10254343e11d8a9573a969e5df33d551e7c4e587cf5b4184
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size 379775475
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superunet_fold0/model_last.pt
ADDED
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:9c53ea81dce6a03d27035a2ea162ce6232fe770e7ee03dc173b992f13943dc8d
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+
size 379774439
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superunet_fold0_crop96/config.json
ADDED
@@ -0,0 +1,116 @@
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{
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"sim_data": "/home/bwittm/share/synthetic_cerebral_octa",
|
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"sim_data_version": "b421",
|
4 |
+
"annotations": "/home/bwittm/share/manual_annotations",
|
5 |
+
"test_imgs": [
|
6 |
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"m4_0"
|
7 |
+
],
|
8 |
+
"val_imgs": [
|
9 |
+
"m4_0"
|
10 |
+
],
|
11 |
+
"train_on_real": true,
|
12 |
+
"train_img": [
|
13 |
+
"m4_1",
|
14 |
+
"m44_0",
|
15 |
+
"m44_1",
|
16 |
+
"m78_0",
|
17 |
+
"m78_1"
|
18 |
+
],
|
19 |
+
"experiment_name": "superunet_fold0_test_moreparams_crop96",
|
20 |
+
"device": "cuda:0",
|
21 |
+
"store_ckpt": true,
|
22 |
+
"epochs": 400,
|
23 |
+
"epochs_decay": 50,
|
24 |
+
"val_interval": 1,
|
25 |
+
"itera_pro_epoch": 50000,
|
26 |
+
"seed": 0,
|
27 |
+
"batch_size": 32,
|
28 |
+
"num_workers": 16,
|
29 |
+
"sliding_window_overlap": 0.5,
|
30 |
+
"sliding_window_mode": "constant",
|
31 |
+
"threshold": 0.5,
|
32 |
+
"seg": {
|
33 |
+
"lr": "1e-5",
|
34 |
+
"channels": [
|
35 |
+
64,
|
36 |
+
128,
|
37 |
+
256,
|
38 |
+
512,
|
39 |
+
1024
|
40 |
+
],
|
41 |
+
"strides": [
|
42 |
+
2,
|
43 |
+
2,
|
44 |
+
2,
|
45 |
+
2
|
46 |
+
],
|
47 |
+
"activation": "LEAKYRELU",
|
48 |
+
"normalization": "BATCH",
|
49 |
+
"dropout": 0.3,
|
50 |
+
"max_norm_clip": 1.0,
|
51 |
+
"cldice": false,
|
52 |
+
"iter": 15,
|
53 |
+
"alpha": 0.1,
|
54 |
+
"smooth": 1
|
55 |
+
},
|
56 |
+
"augmentation": {
|
57 |
+
"patch_size": [
|
58 |
+
96,
|
59 |
+
96,
|
60 |
+
96
|
61 |
+
],
|
62 |
+
"use_augmentation": true,
|
63 |
+
"p_gaussian_noise": 0.5,
|
64 |
+
"p_gaussian_smooth": 0.5,
|
65 |
+
"p_intensity_scale": 0,
|
66 |
+
"p_intensity_shift": 0,
|
67 |
+
"p_adjust_contrast": 0,
|
68 |
+
"p_histogram_shift": 0.5,
|
69 |
+
"p_rotate": 0.5,
|
70 |
+
"p_zoom": 0.5,
|
71 |
+
"p_shear": 0,
|
72 |
+
"p_flip": [
|
73 |
+
0,
|
74 |
+
0.5,
|
75 |
+
0.5
|
76 |
+
],
|
77 |
+
"gaussian_noise_mean": 0.0,
|
78 |
+
"gaussian_noise_std": 0.01,
|
79 |
+
"gaussian_smooth_sigma": [
|
80 |
+
0.0,
|
81 |
+
0.5
|
82 |
+
],
|
83 |
+
"intensity_scale_factors": [
|
84 |
+
-0.5,
|
85 |
+
1.2
|
86 |
+
],
|
87 |
+
"intensity_shift_offsets": [
|
88 |
+
0.05,
|
89 |
+
0.2
|
90 |
+
],
|
91 |
+
"adjust_contrast_gamma": [
|
92 |
+
0.7,
|
93 |
+
1.3
|
94 |
+
],
|
95 |
+
"control_points": [
|
96 |
+
5,
|
97 |
+
10
|
98 |
+
],
|
99 |
+
"rotation": [
|
100 |
+
-90,
|
101 |
+
90
|
102 |
+
],
|
103 |
+
"min_zoom": 1.0,
|
104 |
+
"max_zoom": 1.2,
|
105 |
+
"shear_range": [
|
106 |
+
0.1,
|
107 |
+
0.1,
|
108 |
+
0.1
|
109 |
+
]
|
110 |
+
},
|
111 |
+
"git_commit_hash": "7a8f7f7",
|
112 |
+
"python_version": "3.8.19 | packaged by conda-forge | (default, Mar 20 2024, 12:47:35) ",
|
113 |
+
"gcc_version": "[GCC 12.3.0]",
|
114 |
+
"pytorch_version": "1.13.1+cu116",
|
115 |
+
"host_name": "u20-computegpu-5"
|
116 |
+
}
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superunet_fold0_crop96/model_best_0.802.pt
ADDED
@@ -0,0 +1,3 @@
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|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:f74df7404cd83c46ccd658155905ec3dd82d66e6371bbc78b9e95ea0ad6852f2
|
3 |
+
size 379775411
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superunet_fold0_crop96/model_last.pt
ADDED
@@ -0,0 +1,3 @@
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|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:02eb51439fb9b51f2ae5c5799351728225dae11b16fbfb4837f9faa255412788
|
3 |
+
size 379774439
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superunet_fold0_doppler/config.json
ADDED
@@ -0,0 +1,117 @@
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|
1 |
+
{
|
2 |
+
"sim_data": "/home/bwittm/share/synthetic_cerebral_octa",
|
3 |
+
"sim_data_version": "b421",
|
4 |
+
"annotations": "/home/bwittm/share/manual_annotations_incldoppler",
|
5 |
+
"test_imgs": [
|
6 |
+
"m4_0"
|
7 |
+
],
|
8 |
+
"val_imgs": [
|
9 |
+
"m4_0"
|
10 |
+
],
|
11 |
+
"train_on_real": true,
|
12 |
+
"use_doppler": true,
|
13 |
+
"train_img": [
|
14 |
+
"m4_1",
|
15 |
+
"m44_0",
|
16 |
+
"m44_1",
|
17 |
+
"m78_0",
|
18 |
+
"m78_1"
|
19 |
+
],
|
20 |
+
"experiment_name": "superunet_fold0_test_moreparams_doppler",
|
21 |
+
"device": "cuda:0",
|
22 |
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superunet_fold1_pre/model_best_0.762.pt
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@@ -0,0 +1,3 @@
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superunet_fold1_pre/model_last.pt
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superunet_fold2_pre/config.json
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superunet_fold2_pre/model_best_0.836.pt
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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superunet_fold2_pre/model_last.pt
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version https://git-lfs.github.com/spec/v1
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superunet_fold3_pre/config.json
ADDED
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|
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|
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|
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|
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