Upload weights used to initialize pre-trained models.
Browse files- superunet_syn_base_cldice01_moreparams/config.json +116 -0
- superunet_syn_base_cldice01_moreparams/events.out.tfevents.1713183961.u20-computegpu-3.1599522.0 +3 -0
- superunet_syn_base_cldice01_moreparams/model_best_0.757.pt +3 -0
- superunet_syn_base_cldice01_moreparams/model_last.pt +3 -0
- superunet_syn_base_moreparams/config.json +116 -0
- superunet_syn_base_moreparams/events.out.tfevents.1713203288.u20-computeibmgpu-vesta13.1228735.0 +3 -0
- superunet_syn_base_moreparams/model_best_0.763.pt +3 -0
- superunet_syn_base_moreparams/model_last.pt +3 -0
superunet_syn_base_cldice01_moreparams/config.json
ADDED
@@ -0,0 +1,116 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"sim_data": "/home/bwittm/share/synthetic_cerebral_octa",
|
3 |
+
"sim_data_version": "b421",
|
4 |
+
"annotations": "/home/bwittm/share/manual_annotations",
|
5 |
+
"test_imgs": [
|
6 |
+
"m4_0"
|
7 |
+
],
|
8 |
+
"val_imgs": [
|
9 |
+
"m4_0"
|
10 |
+
],
|
11 |
+
"train_on_real": false,
|
12 |
+
"train_img": [
|
13 |
+
"m4_1",
|
14 |
+
"m44_0",
|
15 |
+
"m44_1",
|
16 |
+
"m78_0",
|
17 |
+
"m78_1"
|
18 |
+
],
|
19 |
+
"experiment_name": "superunet_syn_base_cldice01_moreparams",
|
20 |
+
"device": "cuda:0",
|
21 |
+
"store_ckpt": true,
|
22 |
+
"epochs": 300,
|
23 |
+
"epochs_decay": 50,
|
24 |
+
"val_interval": 1,
|
25 |
+
"itera_pro_epoch": 50000,
|
26 |
+
"seed": 0,
|
27 |
+
"batch_size": 32,
|
28 |
+
"num_workers": 16,
|
29 |
+
"sliding_window_overlap": 0.5,
|
30 |
+
"sliding_window_mode": "constant",
|
31 |
+
"threshold": 0.5,
|
32 |
+
"seg": {
|
33 |
+
"lr": "1e-5",
|
34 |
+
"channels": [
|
35 |
+
64,
|
36 |
+
128,
|
37 |
+
256,
|
38 |
+
512,
|
39 |
+
1024
|
40 |
+
],
|
41 |
+
"strides": [
|
42 |
+
2,
|
43 |
+
2,
|
44 |
+
2,
|
45 |
+
2
|
46 |
+
],
|
47 |
+
"activation": "LEAKYRELU",
|
48 |
+
"normalization": "BATCH",
|
49 |
+
"dropout": 0.3,
|
50 |
+
"max_norm_clip": 1.0,
|
51 |
+
"cldice": true,
|
52 |
+
"iter": 15,
|
53 |
+
"alpha": 0.1,
|
54 |
+
"smooth": 1
|
55 |
+
},
|
56 |
+
"augmentation": {
|
57 |
+
"patch_size": [
|
58 |
+
64,
|
59 |
+
64,
|
60 |
+
64
|
61 |
+
],
|
62 |
+
"use_augmentation": true,
|
63 |
+
"p_gaussian_noise": 0.5,
|
64 |
+
"p_gaussian_smooth": 0.5,
|
65 |
+
"p_intensity_scale": 0,
|
66 |
+
"p_intensity_shift": 0,
|
67 |
+
"p_adjust_contrast": 0,
|
68 |
+
"p_histogram_shift": 0.5,
|
69 |
+
"p_rotate": 0.5,
|
70 |
+
"p_zoom": 0.5,
|
71 |
+
"p_shear": 0,
|
72 |
+
"p_flip": [
|
73 |
+
0,
|
74 |
+
0.5,
|
75 |
+
0.5
|
76 |
+
],
|
77 |
+
"gaussian_noise_mean": 0.0,
|
78 |
+
"gaussian_noise_std": 0.01,
|
79 |
+
"gaussian_smooth_sigma": [
|
80 |
+
0.0,
|
81 |
+
0.5
|
82 |
+
],
|
83 |
+
"intensity_scale_factors": [
|
84 |
+
-0.5,
|
85 |
+
1.2
|
86 |
+
],
|
87 |
+
"intensity_shift_offsets": [
|
88 |
+
0.05,
|
89 |
+
0.2
|
90 |
+
],
|
91 |
+
"adjust_contrast_gamma": [
|
92 |
+
0.7,
|
93 |
+
1.3
|
94 |
+
],
|
95 |
+
"control_points": [
|
96 |
+
5,
|
97 |
+
10
|
98 |
+
],
|
99 |
+
"rotation": [
|
100 |
+
-90,
|
101 |
+
90
|
102 |
+
],
|
103 |
+
"min_zoom": 1.0,
|
104 |
+
"max_zoom": 1.2,
|
105 |
+
"shear_range": [
|
106 |
+
0.1,
|
107 |
+
0.1,
|
108 |
+
0.1
|
109 |
+
]
|
110 |
+
},
|
111 |
+
"git_commit_hash": "7a8f7f7",
|
112 |
+
"python_version": "3.8.19 | packaged by conda-forge | (default, Mar 20 2024, 12:47:35) ",
|
113 |
+
"gcc_version": "[GCC 12.3.0]",
|
114 |
+
"pytorch_version": "1.13.1+cu116",
|
115 |
+
"host_name": "u20-computegpu-3"
|
116 |
+
}
|
superunet_syn_base_cldice01_moreparams/events.out.tfevents.1713183961.u20-computegpu-3.1599522.0
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:ae9d94b64e50ddf4d68290aa3b9b3deb202a865b42ab97c5b19c180818d6f6de
|
3 |
+
size 415795
|
superunet_syn_base_cldice01_moreparams/model_best_0.757.pt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:cc3f754b23fdeca0759571db2e2bb4a88bca92f01fa3222e85a5a32cd68ff3f4
|
3 |
+
size 379775475
|
superunet_syn_base_cldice01_moreparams/model_last.pt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:4f9c74c65c7e5386c89a5b87d6253c94d2af13d2d3b34bd5c62c60b68ee54a47
|
3 |
+
size 379774503
|
superunet_syn_base_moreparams/config.json
ADDED
@@ -0,0 +1,116 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"sim_data": "/home/bwittm/share/synthetic_cerebral_octa",
|
3 |
+
"sim_data_version": "b421",
|
4 |
+
"annotations": "/home/bwittm/share/manual_annotations",
|
5 |
+
"test_imgs": [
|
6 |
+
"m4_0"
|
7 |
+
],
|
8 |
+
"val_imgs": [
|
9 |
+
"m4_0"
|
10 |
+
],
|
11 |
+
"train_on_real": false,
|
12 |
+
"train_img": [
|
13 |
+
"m4_1",
|
14 |
+
"m44_0",
|
15 |
+
"m44_1",
|
16 |
+
"m78_0",
|
17 |
+
"m78_1"
|
18 |
+
],
|
19 |
+
"experiment_name": "superunet_syn_base_moreparams",
|
20 |
+
"device": "cuda:0",
|
21 |
+
"store_ckpt": true,
|
22 |
+
"epochs": 300,
|
23 |
+
"epochs_decay": 50,
|
24 |
+
"val_interval": 1,
|
25 |
+
"itera_pro_epoch": 50000,
|
26 |
+
"seed": 0,
|
27 |
+
"batch_size": 32,
|
28 |
+
"num_workers": 16,
|
29 |
+
"sliding_window_overlap": 0.5,
|
30 |
+
"sliding_window_mode": "constant",
|
31 |
+
"threshold": 0.5,
|
32 |
+
"seg": {
|
33 |
+
"lr": "1e-5",
|
34 |
+
"channels": [
|
35 |
+
64,
|
36 |
+
128,
|
37 |
+
256,
|
38 |
+
512,
|
39 |
+
1024
|
40 |
+
],
|
41 |
+
"strides": [
|
42 |
+
2,
|
43 |
+
2,
|
44 |
+
2,
|
45 |
+
2
|
46 |
+
],
|
47 |
+
"activation": "LEAKYRELU",
|
48 |
+
"normalization": "BATCH",
|
49 |
+
"dropout": 0.3,
|
50 |
+
"max_norm_clip": 1.0,
|
51 |
+
"cldice": false,
|
52 |
+
"iter": 15,
|
53 |
+
"alpha": 0.1,
|
54 |
+
"smooth": 1
|
55 |
+
},
|
56 |
+
"augmentation": {
|
57 |
+
"patch_size": [
|
58 |
+
64,
|
59 |
+
64,
|
60 |
+
64
|
61 |
+
],
|
62 |
+
"use_augmentation": true,
|
63 |
+
"p_gaussian_noise": 0.5,
|
64 |
+
"p_gaussian_smooth": 0.5,
|
65 |
+
"p_intensity_scale": 0,
|
66 |
+
"p_intensity_shift": 0,
|
67 |
+
"p_adjust_contrast": 0,
|
68 |
+
"p_histogram_shift": 0.5,
|
69 |
+
"p_rotate": 0.5,
|
70 |
+
"p_zoom": 0.5,
|
71 |
+
"p_shear": 0,
|
72 |
+
"p_flip": [
|
73 |
+
0,
|
74 |
+
0.5,
|
75 |
+
0.5
|
76 |
+
],
|
77 |
+
"gaussian_noise_mean": 0.0,
|
78 |
+
"gaussian_noise_std": 0.01,
|
79 |
+
"gaussian_smooth_sigma": [
|
80 |
+
0.0,
|
81 |
+
0.5
|
82 |
+
],
|
83 |
+
"intensity_scale_factors": [
|
84 |
+
-0.5,
|
85 |
+
1.2
|
86 |
+
],
|
87 |
+
"intensity_shift_offsets": [
|
88 |
+
0.05,
|
89 |
+
0.2
|
90 |
+
],
|
91 |
+
"adjust_contrast_gamma": [
|
92 |
+
0.7,
|
93 |
+
1.3
|
94 |
+
],
|
95 |
+
"control_points": [
|
96 |
+
5,
|
97 |
+
10
|
98 |
+
],
|
99 |
+
"rotation": [
|
100 |
+
-90,
|
101 |
+
90
|
102 |
+
],
|
103 |
+
"min_zoom": 1.0,
|
104 |
+
"max_zoom": 1.2,
|
105 |
+
"shear_range": [
|
106 |
+
0.1,
|
107 |
+
0.1,
|
108 |
+
0.1
|
109 |
+
]
|
110 |
+
},
|
111 |
+
"git_commit_hash": "7a8f7f7",
|
112 |
+
"python_version": "3.8.19 | packaged by conda-forge | (default, Mar 20 2024, 12:47:35) ",
|
113 |
+
"gcc_version": "[GCC 12.3.0]",
|
114 |
+
"pytorch_version": "1.13.1+cu116",
|
115 |
+
"host_name": "u20-computeibmgpu-vesta13"
|
116 |
+
}
|
superunet_syn_base_moreparams/events.out.tfevents.1713203288.u20-computeibmgpu-vesta13.1228735.0
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:8984e8a22d8081d3220f6bbd428e6aa21a023f7a17eedcf817e60488cbd9b227
|
3 |
+
size 578503
|
superunet_syn_base_moreparams/model_best_0.763.pt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:49f81d2d0c57169b29f2fd1e7ea0227a5bafa0c5eac7f0611498c0c9b2960d12
|
3 |
+
size 379775411
|
superunet_syn_base_moreparams/model_last.pt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:670787f0634062eee6b980d9cb6bcf75df702d9e4998e601cafb402152041b68
|
3 |
+
size 379774439
|