Scope-A/S-A-Quick/nlp/Genetic-Association-Database/annotation.json

{
    "task": "genetic_association_classification",
    "data_source": "genetic_association_dataset",
    "type": "classification",
    "modality": {
        "in": [
            "text"
        ],
        "out": [
            "text"
        ]
    },
    "version": "1.0",
    "data": [
        {
            "id": "0388",
            "input": {
                "raw_text": "We conclude that @GENE$ is associated with @DISEASE$ and metabolic deterioration but does not contribute to an increased risk for type 2 diabetes.",
                "prompt": "<<<raw_text>>>. Classify the association between @GENE$ and @DISEASE$. The possible association types are: negative, positive. Please provide only the association type."
            },
            "output": {
                "text": ""
            }
        },
        {
            "id": "0182",
            "input": {
                "raw_text": "Our results suggest that the polymorphism in @GENE$ gene might not confer increased susceptibility for @DISEASE$ in a Japanese population.",
                "prompt": "<<<raw_text>>>. Classify the association between @GENE$ and @DISEASE$. The possible association types are: negative, positive. Please provide only the association type."
            },
            "output": {
                "text": ""
            }
        },
        {
            "id": "0228",
            "input": {
                "raw_text": "These results suggest that the genomic interval of @GENE$ probably involved in transcriptional regulation does not display major genetic relevance in Japanese @DISEASE$ patients.",
                "prompt": "<<<raw_text>>>. Classify the association between @GENE$ and @DISEASE$. The possible association types are: negative, positive. Please provide only the association type."
            },
            "output": {
                "text": ""
            }
        },
        {
            "id": "0380",
            "input": {
                "raw_text": "We postulate that the @GENE$ gene might not be a susceptibility gene for @DISEASE$ at least in the Chinese population.",
                "prompt": "<<<raw_text>>>. Classify the association between @GENE$ and @DISEASE$. The possible association types are: negative, positive. Please provide only the association type."
            },
            "output": {
                "text": ""
            }
        },
        {
            "id": "0367",
            "input": {
                "raw_text": "We conclude that  the @GENE$ N314D allele does not predispose to @DISEASE$.",
                "prompt": "<<<raw_text>>>. Classify the association between @GENE$ and @DISEASE$. The possible association types are: negative, positive. Please provide only the association type."
            },
            "output": {
                "text": ""
            }
        },
        {
            "id": "0415",
            "input": {
                "raw_text": "On the whole, our data suggest that @DISEASE$ and @GENE$ polymorphisms, as well as their haplotypes, are unlikely to be associated with successful human longevity.",
                "prompt": "<<<raw_text>>>. Classify the association between @DISEASE$ and @GENE$. The possible association types are: negative, positive. Please provide only the association type."
            },
            "output": {
                "text": ""
            }
        },
        {
            "id": "0260",
            "input": {
                "raw_text": "Our results suggest that the @GENE$-Pro(340)Ala polymorphism contributes to @DISEASE$ risk.",
                "prompt": "<<<raw_text>>>. Classify the association between @GENE$ and @DISEASE$. The possible association types are: negative, positive. Please provide only the association type."
            },
            "output": {
                "text": ""
            }
        },
        {
            "id": "0186",
            "input": {
                "raw_text": "All our results indicate that the presence of the @GENE$ genotype (++) in patients with structural heart disease, severe left ventricular dysfunction and malignant ventricular @DISEASE$ increases the risk for these patients of hemodynamic collapse during these arrhythmias.",
                "prompt": "<<<raw_text>>>. Classify the association between @GENE$ and @DISEASE$. The possible association types are: negative, positive. Please provide only the association type."
            },
            "output": {
                "text": ""
            }
        },
        {
            "id": "0191",
            "input": {
                "raw_text": "Thus, in contrast to prior studies reporting positive association of the @GENE$ gene with schizophrenia in both Irish and German population, our data indicate that the human DTNBP1 is unlikely a major susceptible gene for @DISEASE$ in Chinese Han patients from Taiwan.",
                "prompt": "<<<raw_text>>>. Classify the association between @GENE$ and @DISEASE$. The possible association types are: negative, positive. Please provide only the association type."
            },
            "output": {
                "text": ""
            }
        },
        {
            "id": "0329",
            "input": {
                "raw_text": "revealed no significant association between schizophrenia and the SNPs in the upstream region of @GENE$, these SNPs apparently do not play a critical role in the @DISEASE$ of schizophrenia in the Japanese population.",
                "prompt": "<<<raw_text>>>. Classify the association between @GENE$ and @DISEASE$. The possible association types are: negative, positive. Please provide only the association type."
            },
            "output": {
                "text": ""
            }
        }
    ],
    "set_type": "closeset"
}