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README.md
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- split: test
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path: data/test-*
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- split: test
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path: data/test-*
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---
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UniProt search (7/22/2025): * (Swiss-Prot reviewed entries only)
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download TSV with Taxonomic lineage (Ids), sequence, and length.
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Curation steps:
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- Filtered for sequence length >=20 and <=2048
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- Extract Taxonomic IDs (domain, kingdom, phylum, class, order, family, genus, species) from taxonomic_lineage_ids column
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- Keep entry, species, and sequence information
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- Drop N/A
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- CD-HIT using Docker at 80% similarity threshold and n=5
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- Keep representative sequences
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- Create labels based on spcecies
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- Remove species/examples with fewer than 100 samples
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- Stratified split: first get test set (5,000), then eval (5,000), rest is train
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