Gurveer05 commited on
Commit
d4f20ff
·
verified ·
1 Parent(s): fa698ce

Create README.md

Browse files
Files changed (1) hide show
  1. README.md +12 -0
README.md ADDED
@@ -0,0 +1,12 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ tags:
3
+ - biology
4
+ size_categories:
5
+ - 1M<n<10M
6
+ ---
7
+ # Promoter Sequences for Maize NAM lines
8
+
9
+ The data in this dataset has the promoter sequences for **26 Maize NAM lines** and has been used for the finetuning step of [`Florabert`](https://huggingface.co/Gurveer05/FloraBERT). It has been created by processing the raw fasta files and the gff3 files from [`MaizeGDB`](https://www.maizegdb.org/) for the 26 NAM lines.
10
+ *samtools* and *bedtools* have been used to extract the promoter sequences from these that are 1kb upstream of the sequence.
11
+
12
+ The data has been split into train and test data (70-30 split). In all, there are ~ 1 million sequences across the files. The steps followed to obtain this data are available in this [`Github Repository`](https://github.com/gurveervirk/florabert).