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{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"id": "fedb6865",
"metadata": {
"execution": {
"iopub.execute_input": "2025-03-25T06:23:09.144390Z",
"iopub.status.busy": "2025-03-25T06:23:09.144164Z",
"iopub.status.idle": "2025-03-25T06:23:09.308160Z",
"shell.execute_reply": "2025-03-25T06:23:09.307817Z"
}
},
"outputs": [],
"source": [
"import sys\n",
"import os\n",
"sys.path.append(os.path.abspath(os.path.join(os.getcwd(), '../..')))\n",
"\n",
"# Path Configuration\n",
"from tools.preprocess import *\n",
"\n",
"# Processing context\n",
"trait = \"Alcohol_Flush_Reaction\"\n",
"\n",
"# Input paths\n",
"tcga_root_dir = \"../../input/TCGA\"\n",
"\n",
"# Output paths\n",
"out_data_file = \"../../output/preprocess/Alcohol_Flush_Reaction/TCGA.csv\"\n",
"out_gene_data_file = \"../../output/preprocess/Alcohol_Flush_Reaction/gene_data/TCGA.csv\"\n",
"out_clinical_data_file = \"../../output/preprocess/Alcohol_Flush_Reaction/clinical_data/TCGA.csv\"\n",
"json_path = \"../../output/preprocess/Alcohol_Flush_Reaction/cohort_info.json\"\n"
]
},
{
"cell_type": "markdown",
"id": "3467dda1",
"metadata": {},
"source": [
"### Step 1: Initial Data Loading"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "d43e87ea",
"metadata": {},
"outputs": [],
"source": []
},
{
"cell_type": "markdown",
"id": "61f540b2",
"metadata": {},
"source": [
"### Step 2: Find Candidate Demographic Features"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "4c2aab2e",
"metadata": {},
"outputs": [],
"source": []
},
{
"cell_type": "markdown",
"id": "1c26dece",
"metadata": {},
"source": [
"### Step 3: Select Demographic Features"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "22b2a785",
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.16"
}
},
"nbformat": 4,
"nbformat_minor": 5
}
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