GenoTEX / output /regress /Fibromyalgia /significant_genes_condition_Huntingtons_Disease.json
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{
"significant_genes": {
"Variable": [
"MFSD3",
"ANKRD20A11P",
"LTA4H",
"CCDC170",
"HLA-L",
"LCT",
"PARD3B",
"NEIL1",
"HTN1",
"NUDC",
"DCPS",
"ITSN1",
"FAM24A",
"BLVRA",
"ENC1",
"CADPS",
"NDC1",
"KAT2B",
"RGS17",
"MIR9-1",
"ELAPOR1",
"OR1N1",
"STXBP1",
"PGC",
"FAM167A-AS1",
"TMEM255B",
"CPT1A",
"TTLL7",
"IL13",
"APBB2",
"HMGN2P46",
"AKAP12",
"DVL2",
"LRRC43",
"DERL3",
"MYH1",
"PIDD1",
"ZNF620",
"CPA3",
"ELL3",
"HLA-DPB2",
"ECRG4",
"CCR9",
"SCARNA8",
"LRIG3",
"PGM5P2",
"HTN3",
"MRPL38",
"TTC41P",
"CCNI",
"HLA-DQB1",
"MDS2",
"CROCC",
"ICA1L",
"ATP2B3",
"NYAP2",
"CYP27A1",
"DEFB119",
"SCG3",
"IFNE",
"SNORD113-4",
"DOCK3",
"UQCC3",
"TNKS1BP1",
"LGI4",
"SLC25A21",
"IL10",
"COL4A6",
"F7",
"AFAP1L2",
"GSDME",
"MYBPC1",
"GTF2A1",
"CLLU1",
"PGM5",
"C1orf174",
"ATOH8",
"NBPF22P",
"HTR3B",
"NOVA1",
"NT5M",
"SPINK2",
"APIP",
"TXNDC8",
"SLC25A34",
"LINC00272",
"ADCK1",
"CHST7",
"SCHIP1",
"MIR320A",
"POC1A",
"MTNR1B",
"EHHADH",
"KIAA1656",
"OSGIN1",
"VWA5B2",
"DRICH1",
"PTGDS",
"ADH6",
"KTN1-AS1",
"OR10A7",
"PLD6",
"MMP12",
"MROH8",
"NAPSB",
"ADGRL1",
"TXNDC11",
"CEND1",
"RAB11FIP3",
"TCEAL1",
"SERINC2",
"FKBPL",
"SH3D19",
"SLC25A47",
"SEMA3A",
"NPAS3",
"LINC02912",
"IFT122",
"PEX10",
"ZNF20",
"OR4A16",
"JAKMIP3",
"CFD",
"SPHK1",
"CACNB2",
"MFSD4A",
"CFAP53",
"MARCHF8",
"TIGD1",
"GFOD3P",
"TBX6",
"RRH",
"GIPR",
"THOC3",
"CYP26B1",
"C2orf81",
"FOXRED1",
"SMAD9",
"MCAM",
"CD93",
"PI3",
"TGFB2",
"PTP4A3",
"CRCT1",
"G0S2",
"METTL27",
"HACD1",
"GTF2H2",
"C14orf93",
"CCDC158",
"RDH5",
"GCM1",
"COA1",
"GCHFR",
"CCNA1",
"IL31RA",
"JOSD2",
"MEDAG",
"NCKAP5",
"CPLANE2",
"EWSAT1",
"AP1M2",
"TUBB6",
"LEKR1",
"CCDC122",
"GTF2H2B",
"GTF2H2C_2",
"GTF2H2C"
],
"Coefficient": [
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-0.005459725935994447,
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-0.0035905828969269296,
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],
"Absolute Coefficient": [
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0.06148442572213511,
0.05768591317563426,
0.053164649024477026,
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]
},
"cv_performance": {
"prediction": {
"accuracy": 65.71428571428571,
"precision": 63.62337662337662,
"recall": 58.52813852813851,
"f1": 60.725940725940724
},
"selection": {
"precision": 0.3077105154151133,
"recall": 1.0256410256410255,
"f1": 0.473389355742297,
"jaccard": 0.2381036743081884
}
}
}