GenoTEX / output /regress /Crohns_Disease /significant_genes_condition_Age.json
Liu-Hy's picture
Add files using upload-large-folder tool
cc1dea6 verified
raw
history blame
19.7 kB
{
"significant_genes": {
"Variable": [
"NPHP3-AS1",
"SH3RF2",
"CSTPP1",
"CFAP44",
"RAB3A",
"AGPAT3",
"CIB1",
"SPINK8",
"EPHX4",
"CHAMP1",
"SLC39A3",
"MIX23",
"FZD3",
"ICE2",
"BATF2",
"DNAJC3",
"FBXO44",
"PMS2CL",
"ABHD13",
"BAALC",
"AP1S1",
"ZSWIM7",
"KCTD10",
"NPR2",
"CYP2D7",
"B4GAT1",
"FECH",
"INPP5B",
"FAT1",
"ASL",
"TCL1A",
"PLIN2",
"PPFIA4",
"SPPL3",
"RGN",
"JUP",
"CMTM8",
"NOL3",
"FTL",
"MTMR11",
"ZNF211",
"HIC1",
"ZHX3",
"TMEM186",
"ZFP69",
"MMS22L",
"CLEC11A",
"PIM3",
"GPR143",
"CCL23",
"EMC2",
"CACNB3",
"TOP1",
"LAMTOR1",
"GABPB2",
"P2RY10",
"SKAP2",
"ZFP14",
"PLAAT1",
"RGS1",
"INSL3",
"UBB",
"SCRN1",
"PPP1R13L",
"PKHD1L1",
"TCEAL4",
"ZNF568",
"ZNF718",
"ENTPD7",
"PFDN6",
"ERAP2",
"PIGO",
"ATP6V1E2",
"CCN2",
"EHD3",
"CCL28",
"CGB7",
"FABP4",
"COLGALT2",
"LIPC",
"AGAP7P",
"NHSL3",
"KREMEN2",
"TSPAN4",
"KIR2DL4",
"UBC",
"CITED4",
"TYMS",
"TRIM52",
"CFH",
"DNAL1",
"AIPL1",
"FN3KRP",
"IGFBP2",
"TLR9",
"ZNF329",
"PTPRT",
"CDPF1",
"SLITRK2",
"LINC02902",
"TNFSF11",
"ADA2",
"CCDC18",
"CDYL",
"SOX13",
"PTPRQ",
"RCVRN",
"CSNK2A3",
"RNF150",
"SCGB1C1",
"NLE1",
"PIGV",
"ARHGAP11B",
"PHF13",
"FPR3",
"MINDY1",
"TXNRD1",
"GPHB5",
"JAKMIP2",
"GSTT1",
"ACTN3",
"CISD3",
"ZNF571",
"PSMD11",
"PPEF1",
"CYP26B1",
"PTPRJ",
"PDE6C",
"GGTLC1",
"NXPH1",
"FERD3L",
"PER3",
"TCP11L1",
"FUCA2",
"NDUFA4L2",
"CLDN5",
"NRN1",
"OR2A9P",
"MIR1224",
"IL18RAP",
"IGLL3P",
"RAB11FIP5",
"SPNS1",
"GRHPR",
"CLEC14A",
"KANSL1L",
"SNORD113-4",
"TBRG1",
"PTCHD3",
"CRABP2",
"ARL11",
"MAGI1",
"STAT1",
"GAS1",
"TATDN1",
"RRP7A",
"CYB5R2",
"CYBB",
"SPECC1",
"VEGFA",
"ZNF821",
"GPRC5B",
"MYL9",
"ARHGAP22",
"CCDC121",
"TPPP3",
"PEX6",
"DCP1B",
"OTOR",
"MVK",
"AK3",
"RASSF3",
"DGKH",
"KLHL17",
"TRIM62",
"TLCD3B",
"ZFY",
"EFCAB12",
"LDLR",
"EPS8L3",
"LHFPL1",
"ABHD1",
"MYO16",
"PPT2",
"COL9A1",
"CDC42SE1",
"SPESP1",
"IFFO1",
"ZNF597",
"MREG",
"EME1",
"REPS1",
"LRRC75A",
"EGOT",
"AKIP1",
"ZBTB41",
"ANAPC2",
"GLS2",
"FBP1",
"UBE2L6",
"KDM1B",
"INSM1",
"MIR542",
"SLC39A14",
"CLEC4C",
"LGALS2",
"LYPD4",
"PLXNA2",
"LMCD1",
"ADAM28",
"WDR55",
"MICB",
"FAM86DP"
],
"Coefficient": [
-0.09276489610516266,
-0.06567404108908909,
0.06475792575670812,
-0.06239608754037609,
-0.06011361424742678,
-0.055983365975367586,
-0.05167052414907417,
-0.05071023655692644,
0.04841050986314623,
-0.04717117772463944,
0.04598184690017885,
0.043336575861449886,
-0.042266095229065895,
0.040384192167907826,
0.040275994257160816,
0.03913164843283266,
0.03861561977509683,
0.0383314469581051,
0.038020309729755127,
0.0377293514556666,
-0.03682569917846977,
0.03627765703002134,
0.03564268564076604,
-0.03411093668354057,
-0.033822449784237374,
0.033744723635155426,
0.03317578455745719,
-0.03308567753307041,
-0.032889119653036876,
0.03288760665140804,
0.03239995967232932,
-0.03070708788330209,
0.030433497722114605,
-0.030374576266696707,
0.029616835659722406,
-0.0290562556803428,
0.027751887318249555,
-0.027333316566837695,
0.026388940937788864,
-0.026198818287533808,
-0.0259838273685367,
0.025184838122272436,
-0.024421910068519587,
0.02442017024052346,
0.023589651035204287,
-0.022833219721807223,
0.02275451246507203,
0.02228319070632633,
0.021857865757926406,
-0.02163239985934689,
0.021370298804076582,
0.02124501188014254,
-0.021106523426088535,
0.020828304256645756,
-0.020707898584483304,
-0.020537163922599563,
-0.02048923976086179,
0.02047333786358542,
0.01971969486516816,
-0.019702392065004536,
0.019407585608536795,
-0.01933346140973309,
-0.01865351141338292,
-0.01864595031921536,
-0.01840337907361978,
-0.017893726348541455,
0.017146753227881634,
0.016934470786861937,
-0.01671894103295608,
-0.016429728461939932,
-0.016395243140978937,
-0.01636347486856133,
-0.016258290386857346,
0.016165906067706518,
0.015656934328659024,
-0.015492318427817207,
-0.015451496988912308,
-0.015365148881026571,
0.015210266137702948,
0.015201075915232929,
-0.01514540341449045,
-0.015031802566604564,
0.014912819177397651,
0.014823488236505346,
-0.014685474392094278,
0.014555274117954367,
0.013835543982740782,
0.013739298425044268,
-0.013489556511046009,
0.013119040016782763,
-0.012823430303918958,
0.012630049700983241,
-0.01257576309380907,
0.012215093341455456,
0.011689929873902398,
-0.011276124919687372,
-0.011275536760225847,
0.011260115011924792,
0.011080857970377339,
-0.010946794841215916,
-0.01081416488472675,
0.010775514059707492,
0.01043389073045502,
-0.010226669101665106,
0.010203659261362196,
-0.010160045959582045,
0.010140123398795962,
0.010012791449057905,
0.010007543030680938,
0.009982056696836022,
-0.00968477777545754,
-0.009510530570847974,
0.009394081765864613,
-0.008960127215979635,
0.008922296996649608,
0.008879062778038172,
-0.008188367307060459,
0.008099509688667227,
0.007382353734798993,
0.006805516622069314,
-0.006733069138688483,
0.0067106174687356955,
-0.006426538414136041,
-0.006377015061420088,
-0.006299203150960951,
-0.00620032547005909,
0.006103053620639308,
-0.006034725837571302,
0.006028998215734211,
0.005643521582827629,
-0.005608957815181677,
0.005444353575721874,
-0.00530545921566603,
0.005160642376008631,
0.0050559668617230205,
0.004832042684536001,
-0.004800373593363423,
0.004707605665784187,
-0.004689935101298817,
0.004660013167267353,
0.00465499571974987,
0.004630302012616745,
0.004541819226712126,
0.00451406760198273,
-0.004371644941244163,
0.004185834204717043,
0.004086497749009069,
0.004058241848285359,
-0.0036592581051705,
0.0035418404892938187,
0.003520435686400082,
-0.0034366443128582536,
0.0033649990039054498,
-0.0033032432112449234,
-0.003131231387351296,
-0.003034105042328365,
0.0027978454372255867,
-0.002733489069071302,
-0.002721244536502175,
0.002617728240370658,
0.002530629719605827,
-0.002520949756393846,
0.002514855099203641,
-0.0024588340728064068,
0.0023006687018466165,
-0.002260436517227938,
0.0022512103525809206,
0.002098615718800061,
-0.0020873380042615614,
0.0018462503753581465,
-0.0017354008582540217,
0.0016979442617465399,
-0.0016729855485833065,
0.0016622469808488226,
0.0016574543029516042,
-0.0016297080176562125,
0.001622330971046246,
0.00162017076979067,
0.0016172225003177334,
0.0015843130625038384,
-0.0015680319492261548,
-0.0014657003800742083,
0.001416310826261874,
0.001403268419777224,
0.0013776043396604367,
-0.0013383280773880232,
0.001130466334924562,
0.0011056378503000405,
-0.0010243931943618987,
-0.0008130449049117532,
0.0007337576343170217,
-0.0007205947544311909,
-0.0007067012755328889,
-0.0006697483992012964,
-0.0006219644227116957,
0.0005867279117576774,
0.0005745639794199196,
-0.0005145128165809122,
-0.0005038750386808585,
0.0004484665666689757,
-0.0004385732788781463,
0.00042599920026262727,
-0.0004244033227066155,
-0.00041808917372709566,
-0.00035789264007726323,
0.0003393968095433371,
0.00016693073590261505,
-0.0001592007231536337,
0.0001515444297748383,
0.00014302834749848343,
8.527611253926338e-05,
6.393913398715767e-05,
2.9919659634015364e-05
],
"Absolute Coefficient": [
0.09276489610516266,
0.06567404108908909,
0.06475792575670812,
0.06239608754037609,
0.06011361424742678,
0.055983365975367586,
0.05167052414907417,
0.05071023655692644,
0.04841050986314623,
0.04717117772463944,
0.04598184690017885,
0.043336575861449886,
0.042266095229065895,
0.040384192167907826,
0.040275994257160816,
0.03913164843283266,
0.03861561977509683,
0.0383314469581051,
0.038020309729755127,
0.0377293514556666,
0.03682569917846977,
0.03627765703002134,
0.03564268564076604,
0.03411093668354057,
0.033822449784237374,
0.033744723635155426,
0.03317578455745719,
0.03308567753307041,
0.032889119653036876,
0.03288760665140804,
0.03239995967232932,
0.03070708788330209,
0.030433497722114605,
0.030374576266696707,
0.029616835659722406,
0.0290562556803428,
0.027751887318249555,
0.027333316566837695,
0.026388940937788864,
0.026198818287533808,
0.0259838273685367,
0.025184838122272436,
0.024421910068519587,
0.02442017024052346,
0.023589651035204287,
0.022833219721807223,
0.02275451246507203,
0.02228319070632633,
0.021857865757926406,
0.02163239985934689,
0.021370298804076582,
0.02124501188014254,
0.021106523426088535,
0.020828304256645756,
0.020707898584483304,
0.020537163922599563,
0.02048923976086179,
0.02047333786358542,
0.01971969486516816,
0.019702392065004536,
0.019407585608536795,
0.01933346140973309,
0.01865351141338292,
0.01864595031921536,
0.01840337907361978,
0.017893726348541455,
0.017146753227881634,
0.016934470786861937,
0.01671894103295608,
0.016429728461939932,
0.016395243140978937,
0.01636347486856133,
0.016258290386857346,
0.016165906067706518,
0.015656934328659024,
0.015492318427817207,
0.015451496988912308,
0.015365148881026571,
0.015210266137702948,
0.015201075915232929,
0.01514540341449045,
0.015031802566604564,
0.014912819177397651,
0.014823488236505346,
0.014685474392094278,
0.014555274117954367,
0.013835543982740782,
0.013739298425044268,
0.013489556511046009,
0.013119040016782763,
0.012823430303918958,
0.012630049700983241,
0.01257576309380907,
0.012215093341455456,
0.011689929873902398,
0.011276124919687372,
0.011275536760225847,
0.011260115011924792,
0.011080857970377339,
0.010946794841215916,
0.01081416488472675,
0.010775514059707492,
0.01043389073045502,
0.010226669101665106,
0.010203659261362196,
0.010160045959582045,
0.010140123398795962,
0.010012791449057905,
0.010007543030680938,
0.009982056696836022,
0.00968477777545754,
0.009510530570847974,
0.009394081765864613,
0.008960127215979635,
0.008922296996649608,
0.008879062778038172,
0.008188367307060459,
0.008099509688667227,
0.007382353734798993,
0.006805516622069314,
0.006733069138688483,
0.0067106174687356955,
0.006426538414136041,
0.006377015061420088,
0.006299203150960951,
0.00620032547005909,
0.006103053620639308,
0.006034725837571302,
0.006028998215734211,
0.005643521582827629,
0.005608957815181677,
0.005444353575721874,
0.00530545921566603,
0.005160642376008631,
0.0050559668617230205,
0.004832042684536001,
0.004800373593363423,
0.004707605665784187,
0.004689935101298817,
0.004660013167267353,
0.00465499571974987,
0.004630302012616745,
0.004541819226712126,
0.00451406760198273,
0.004371644941244163,
0.004185834204717043,
0.004086497749009069,
0.004058241848285359,
0.0036592581051705,
0.0035418404892938187,
0.003520435686400082,
0.0034366443128582536,
0.0033649990039054498,
0.0033032432112449234,
0.003131231387351296,
0.003034105042328365,
0.0027978454372255867,
0.002733489069071302,
0.002721244536502175,
0.002617728240370658,
0.002530629719605827,
0.002520949756393846,
0.002514855099203641,
0.0024588340728064068,
0.0023006687018466165,
0.002260436517227938,
0.0022512103525809206,
0.002098615718800061,
0.0020873380042615614,
0.0018462503753581465,
0.0017354008582540217,
0.0016979442617465399,
0.0016729855485833065,
0.0016622469808488226,
0.0016574543029516042,
0.0016297080176562125,
0.001622330971046246,
0.00162017076979067,
0.0016172225003177334,
0.0015843130625038384,
0.0015680319492261548,
0.0014657003800742083,
0.001416310826261874,
0.001403268419777224,
0.0013776043396604367,
0.0013383280773880232,
0.001130466334924562,
0.0011056378503000405,
0.0010243931943618987,
0.0008130449049117532,
0.0007337576343170217,
0.0007205947544311909,
0.0007067012755328889,
0.0006697483992012964,
0.0006219644227116957,
0.0005867279117576774,
0.0005745639794199196,
0.0005145128165809122,
0.0005038750386808585,
0.0004484665666689757,
0.0004385732788781463,
0.00042599920026262727,
0.0004244033227066155,
0.00041808917372709566,
0.00035789264007726323,
0.0003393968095433371,
0.00016693073590261505,
0.0001592007231536337,
0.0001515444297748383,
0.00014302834749848343,
8.527611253926338e-05,
6.393913398715767e-05,
2.9919659634015364e-05
]
},
"cv_performance": {
"prediction": {
"accuracy": 76.09756097560975,
"precision": 54.0,
"recall": 40.74475524475524,
"f1": 46.042799305957196
},
"selection": {
"precision": 2.636558906701142,
"recall": 2.3,
"f1": 2.456010092566577,
"jaccard": 1.2446294320865334
}
}
}