GenoTEX / output /regress /Fibromyalgia /significant_genes_condition_Obesity.json
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{
"significant_genes": {
"Variable": [
"ANKRD20A11P",
"LTA4H",
"CCDC170",
"PARD3B",
"NEIL1",
"ENC1",
"MIR9-1",
"FAM24A",
"MFSD3",
"HLA-L",
"LCT",
"NDC1",
"HTN1",
"PGM5P2",
"STXBP1",
"IFT122",
"ITSN1",
"ELAPOR1",
"OR1N1",
"CADPS",
"NUDC",
"KAT2B",
"HLA-DQB1",
"IFNE",
"TMEM255B",
"TTLL7",
"FAM167A-AS1",
"AKAP12",
"IL13",
"RGS17",
"MYH1",
"TXNDC11",
"DCPS",
"MARCHF8",
"BLVRA",
"MDS2",
"CYP27A1",
"GSDME",
"APBB2",
"VWA5B2",
"UQCC3",
"OR10A7",
"CPT1A",
"NAPSB",
"MMP12",
"CCNI",
"TNKS1BP1",
"POC1A",
"CPA3",
"ELL3",
"SCG3",
"HTN3",
"SPHK1",
"COL4A6",
"ATOH8",
"HLA-DPB2",
"IL3RA",
"JAKMIP3",
"AFAP1L2",
"CFAP53",
"ITGB8",
"C1orf174",
"MST1",
"TBX6",
"SLC25A34",
"ICA1L",
"PTP4A3",
"RDH5",
"LINC00272",
"LRIG3",
"RRH",
"HTR3B",
"TXNDC8",
"MTNR1B",
"DERL3",
"MROH8",
"DRICH1",
"CYP26B1",
"CCDC146",
"C14orf93",
"LRRC43",
"HMGN2P46",
"DEFB119",
"EBI3",
"NOVA1",
"LINC02912",
"SMAD9",
"OSGIN1",
"DOCK3",
"LGI4",
"CROCC",
"PIDD1",
"LRRC23",
"MRPL38",
"TTC41P",
"KIAA1656",
"EHHADH",
"MCAM",
"RNF17",
"ECRG4",
"TPO",
"EWSAT1",
"PTGDS",
"RAB11FIP3",
"DVL2",
"TRPM4",
"CCR9",
"CLLU1",
"ZNF620",
"F7",
"TGFB2",
"HPCAL4",
"MFSD4A",
"CD93",
"COA1",
"PALLD",
"JOSD2",
"TNFRSF11B",
"FKBPL",
"CDS1",
"C9orf40",
"ZNF530",
"THOC3",
"NEFL",
"TCEAL1",
"LYG1",
"CAMKV",
"APIP",
"NBPF22P"
],
"Coefficient": [
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0.06004506410989513,
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0.05021712643447216,
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-0.03762147006242419,
0.03694830449219344,
0.03689528040541629,
-0.035579689529139744,
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-0.02673202691960817,
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0.023591196532093895,
-0.02282318866827536,
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0.02206053771114334,
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-0.018862757640758402,
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0.014478223690838078,
0.01439452487549808,
0.014194429129313983,
0.014038850861554713,
-0.013993832272523666,
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0.012593059990553128,
0.012000144444774034,
0.011936047885210433,
0.011920458572733945,
-0.011700194501511904,
-0.01154569756006593,
0.01151648058572272,
0.011272218811261966,
0.01119717466042704,
-0.010814230237242983,
-0.010633816198697996,
-0.010537050438841558,
-0.010508452984355142,
-0.010470559647151576,
-0.010318731583770158,
0.010310553700240506,
-0.009890230257501886,
-0.009588847997438043,
-0.00932414688559539,
0.009292848243368765,
0.009247336832826185,
0.008426643784069396,
-0.008411868900007953,
0.008253147198464091,
0.008083045231482804,
-0.008032401181777877,
-0.008029826624761593,
0.008016026262913731,
-0.007908756171829935,
0.007907381927484993,
0.007692966887710983,
-0.007647406671441808,
0.007287787224753153,
-0.007220301665243844,
0.007164872475000732,
0.007013031051129991,
-0.007007212993216804,
-0.006821325653545439,
-0.006523842873990645,
0.006384949746726032,
-0.005718263842600184,
-0.005579004785464117,
0.004879250399899766,
-0.00474720062472205,
0.004644090984846701,
-0.004610990612468111,
-0.003988690358038227,
-0.003831143919030126,
0.0037972096016462634,
-0.0030763683997972065,
0.0029727200556944034,
0.002926065208907832,
0.002543268365663047,
0.002408630140586975,
-0.0021194980182196455,
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-0.001553673717418218,
0.0014533246806726315,
0.0013112554206187628,
0.0011914121925675678,
0.00114764811215434,
0.0008093171308264166,
0.0006898850195861161,
-0.0006384895431814766,
0.000510451442855212,
0.00045482291249874574,
0.00020135276445026025,
-1.2376255950733394e-05
],
"Absolute Coefficient": [
0.06839767857008335,
0.061232031043868894,
0.06004506410989513,
0.05559001423145312,
0.05021712643447216,
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0.04708705157891344,
0.04676938682359019,
0.045795307998684164,
0.04299794782796393,
0.03886103080811298,
0.03811015100244067,
0.03762147006242419,
0.03694830449219344,
0.03689528040541629,
0.035579689529139744,
0.0343993125522979,
0.03320636940915254,
0.03293362930154958,
0.030912009121464606,
0.029104689131587886,
0.02903851016082906,
0.028842902371151342,
0.028225757706422407,
0.02820339973011893,
0.027253992348574535,
0.02673202691960817,
0.026398566827018802,
0.026377769236414033,
0.02488789102683316,
0.024760967266337093,
0.02433787326476181,
0.023591196532093895,
0.02282318866827536,
0.022767495815219026,
0.02206053771114334,
0.021871695156576436,
0.021659621454969115,
0.021552943777402498,
0.020611052383092167,
0.01970798645454607,
0.019453688351759542,
0.018862757640758402,
0.017845089098020826,
0.01732612702022459,
0.017289984445832067,
0.017151471640754038,
0.016109709401536918,
0.015873970261015558,
0.014789721018748637,
0.0145765401202694,
0.014478223690838078,
0.01439452487549808,
0.014194429129313983,
0.014038850861554713,
0.013993832272523666,
0.013619875880086308,
0.013356608464063105,
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0.012593059990553128,
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0.010633816198697996,
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0.005579004785464117,
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0.00474720062472205,
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0.004610990612468111,
0.003988690358038227,
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0.0037972096016462634,
0.0030763683997972065,
0.0029727200556944034,
0.002926065208907832,
0.002543268365663047,
0.002408630140586975,
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0.0018693724897202752,
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0.0014533246806726315,
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0.0011914121925675678,
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0.0008093171308264166,
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0.0006384895431814766,
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0.00045482291249874574,
0.00020135276445026025,
1.2376255950733394e-05
]
},
"cv_performance": {
"prediction": {
"accuracy": 67.14285714285714,
"precision": 64.73659673659674,
"recall": 63.441558441558435,
"f1": 63.87005689074654
},
"selection": {
"precision": 0.20202020202020204,
"recall": 0.5128205128205128,
"f1": 0.2898550724637681,
"jaccard": 0.145985401459854
}
}
}