GenoTEX / output /regress /Depression /significant_genes_condition_Schizophrenia.json
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{
"significant_genes": {
"Variable": [
"SYNM",
"CASC5",
"TRBV27",
"CDKN2B-AS1",
"LILRA3",
"SYCP2L",
"FAM24A",
"CNGA3",
"GSDMB",
"MRI1",
"FBLN5",
"KRTAP21-1",
"NEFL",
"CTD-2639E6",
"IFRD2",
"RP11-1L12",
"PTPDC1",
"RAPGEF4",
"RALY-AS1",
"MUC7",
"BSPRY",
"RNASE3",
"LPL",
"HIVEP3",
"HERC2P3",
"CFD",
"TRBV25-1",
"C20orf85",
"RMDN3",
"TMEM45A",
"SLCO2A1",
"GPR1-AS",
"FCGR2B",
"EFNB2",
"MYOC",
"EPDR1",
"CCDC77",
"VSIG10",
"FLJ31715",
"SAP30L",
"RAVER1",
"C10orf113",
"TMEM242",
"RP11-796E2",
"TADA2A",
"BUB1B",
"CEACAM21",
"SIK1",
"SPATS2L",
"NGFRAP1",
"UBE3B",
"FNDC1",
"FAM19A2",
"ITGA1",
"TOP1MT",
"FCER1G",
"ZG16B",
"LTF",
"CYP4F30P",
"AK093205",
"RP13-638C3",
"YEATS2",
"RGL1",
"NRCAM",
"CAND2",
"PAQR6",
"KRT77",
"CAB39L",
"GEM",
"NDST2",
"DQ582785",
"CABP7",
"HIATL2",
"C15orf48",
"GSG2",
"CSRNP1",
"CCL4",
"AMIGO1",
"BRS3",
"KCTD11",
"RP11-401P9",
"SPINK7",
"ANKRD16",
"FAM118A",
"SGSM3",
"PTGFRN",
"CLEC4G",
"C17orf99",
"TNFSF12",
"MGP",
"PCBD1",
"UVSSA",
"VNN1",
"PPP2R5A",
"HEXDC",
"ZNF804B",
"NTPCR",
"RNF175",
"CNNM4",
"COG1",
"RP11-96D1",
"SYAP1",
"GTF2H2B",
"TTLL5",
"RPH3A",
"DNER",
"SLC52A2",
"H1F0",
"PKHD1L1",
"CEACAM8",
"LHPP",
"FGF9",
"RIMS3",
"STEAP2",
"TRAPPC3L",
"SLC2A6",
"ATOH7",
"TMEM62",
"AREL1",
"SLC26A4",
"SLC25A28",
"CELSR2",
"KIAA1671",
"IL23A",
"ACP5",
"ISM1",
"DQ592442",
"POLQ",
"RHEBL1",
"AX746830"
],
"Coefficient": [
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-0.0002476789557136788,
-0.0001117578344606855,
-2.528913838522702e-05,
-1.0812564126119622e-06
],
"Absolute Coefficient": [
0.06310981445057857,
0.06277978313855538,
0.05880806979087208,
0.05316672951371653,
0.050062910470151975,
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0.03465283517392573,
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0.02973647148920906,
0.029685760042274696,
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0.029181421426955123,
0.029161223795230756,
0.028411941036094866,
0.027586393067988796,
0.027408934899281756,
0.02735954700496139,
0.026531878546485917,
0.025306171936649254,
0.025209126666101037,
0.024204739265320643,
0.023751995536755853,
0.022077340804637104,
0.02207172202686534,
0.021675191088799343,
0.020018870336936962,
0.019548941404059147,
0.01890591604636749,
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]
},
"cv_performance": {
"prediction": {
"accuracy": 75.23809523809524,
"precision": 73.76678876678878,
"recall": 82.57142857142858,
"f1": 77.23137057844704
},
"selection": {
"precision": 1.8861830519185343,
"recall": 0.6734006734006732,
"f1": 0.9923527077061793,
"jaccard": 0.49940426994854226
}
}
}