GenoTEX / output /regress /Eczema /significant_genes_condition_Psoriasis.json
Liu-Hy's picture
Add files using upload-large-folder tool
cc1dea6 verified
raw
history blame
15.4 kB
{
"significant_genes": {
"Variable": [
"ABCA13",
"ATP6V0A2",
"ADAM23",
"DSEL",
"AMER2",
"AGBL4",
"AFAP1-AS1",
"ADAP1",
"DIRC1",
"CES5A",
"ACAP2",
"ASH1L-AS1",
"ASMTL-AS1",
"EXD3",
"ARMH4",
"EXD1",
"SIAE",
"ADAM9",
"AHNAK2",
"ARSB",
"BCL6B",
"C14orf180",
"ABCC4",
"CD200R1",
"COCH",
"AIFM3",
"GPR82",
"ACP1",
"ACTB",
"AGK",
"MTUS2-AS1",
"ADGRG3",
"ZNF577",
"FIP1L1",
"ATOH7",
"CC2D2B",
"BTBD19",
"BFSP2-AS1",
"BNC1",
"AAGAB",
"ENTPD3-AS1",
"C6orf141",
"ANKRD65",
"AGFG2",
"AHI1",
"ADAMTS18",
"PAX8",
"CNST",
"CLIC6",
"POLK",
"ABHD11",
"HDAC9",
"CBX3P2",
"C16orf46",
"C8orf88",
"CDK12",
"CELSR3",
"DEUP1",
"COL1A1",
"ANKIB1",
"CCDC140",
"ACTR3B",
"ASB14",
"CARD14",
"AK7",
"PANX2",
"CHCT1",
"ACTR2",
"DGKE",
"BTBD16",
"IL27",
"CCDC30",
"ASAP1-IT2",
"ENTPD4",
"AK8",
"AGAP11",
"FRA10AC1",
"ADAM32",
"DYNLRB1",
"KCNA6",
"CYCS",
"SLC7A14",
"KRT73",
"TMEM53",
"MYO1H",
"ENTPD5",
"NBPF4",
"ERVFH21-1",
"MPHOSPH6",
"AKT1S1",
"CCDC82",
"DNAI3",
"GNG2",
"ARHGAP20",
"PWRN1",
"MGC16275",
"ANKRD23",
"GCLC",
"CBX3",
"LARS2",
"C11orf58",
"ZNF280D",
"CNTNAP4",
"CYP1B1-AS1",
"EPS15L1",
"CASC2",
"AGPAT1",
"ADAMTS15",
"ERC1",
"CACNA1C",
"ARK2C",
"CARF",
"ALMS1P1",
"CNOT6L",
"C10orf90",
"SERPINA9",
"CCDC150",
"PRF1",
"BEST3",
"IFNL2",
"ZNF777",
"BTN2A1",
"TSPEAR",
"B3GALT6",
"KCNJ9",
"APOL6",
"ELOA3BP",
"DDAH1",
"CFAP47",
"C10orf126",
"CACNB3",
"PDE5A",
"SBF2",
"CYP4B1",
"DBF4B",
"CDC42-IT1",
"FBXO42",
"CDH24",
"ADIG",
"CDH19",
"SETD5",
"TTN",
"MAK",
"LANCL3",
"NAALAD2",
"ZNF114",
"CFLAR-AS1",
"PACSIN2",
"HEATR9",
"EPHA10",
"CLCNKB",
"KIAA0825",
"PKHD1",
"TRIO",
"GABRG3",
"RBFOX1",
"NRF1",
"CLASP2",
"HOXC12",
"ATP13A5",
"VPS13D",
"ELOA3CP",
"ANKRD39",
"ELOA3DP"
],
"Coefficient": [
-0.11567172212331296,
-0.07926700326444669,
0.07527942560466135,
0.05481130866730835,
0.052568633469443196,
-0.045641518114452564,
0.04349042618075248,
-0.042528007953237745,
0.038224289917285895,
-0.03730539048044822,
0.03639352897291266,
-0.03424758559451051,
0.03373741074517173,
-0.033471513953817686,
0.03296568522611585,
0.031356458926106834,
0.03120631444378636,
0.030416727333008094,
-0.030289871092727738,
-0.03024189696415583,
0.030106499668239414,
-0.02883884714548099,
0.028356746888864786,
0.027040181123762826,
-0.02617623396716568,
0.02563035293216983,
-0.023881043310246257,
-0.023027547382297606,
0.022672597747773086,
-0.022656850633593018,
0.022099875749021378,
-0.021946951619119828,
0.021744715508057722,
0.021713081650987908,
-0.021492772803287968,
0.020153783017268802,
0.019898964813476274,
-0.019652709014680952,
-0.019514471668602016,
0.01904980942656495,
-0.018385461066014623,
-0.018071942020741673,
-0.017994034887119925,
0.017779816107035964,
0.01768235640566476,
-0.017316983509405425,
-0.017268267988779784,
0.01690017370458688,
-0.01631444460440681,
-0.015097281503686437,
-0.014732759960851008,
-0.014637187278971186,
-0.014056037709504844,
-0.013708014564696034,
-0.013637086507099534,
-0.013239665674097028,
0.013012116332819066,
-0.012772927492207542,
0.011325289711245341,
-0.011188710313763712,
0.01054989204760798,
-0.010447886114492334,
0.010439273937254835,
0.010307111027285844,
-0.010224818081193262,
-0.010005931277802546,
0.009895252307018206,
0.009535684326551563,
0.009138450222989964,
-0.00898754726721883,
-0.008753028697638271,
0.008721544283469778,
-0.008486485318179087,
-0.008384401274990244,
-0.00827792340384226,
0.007764101406088284,
-0.007568916245947189,
-0.007501093591404458,
0.0074556684220718995,
0.007397222521395875,
-0.00735383168577062,
0.007344407031578251,
0.007259717006521077,
0.0071449645863958374,
0.006926992784261744,
-0.006886359935321471,
0.006868151201125821,
0.006847128723135578,
0.006762440499231255,
0.00661374293068826,
0.006256959215414302,
0.006168165955192134,
-0.005860851925989021,
0.005857437056739691,
0.005685688083022712,
-0.005633830758384729,
-0.005600349853478263,
0.005431206798889247,
0.005341740989538102,
-0.005169501912463518,
0.00513404727692727,
-0.004362382368660257,
-0.003986279315282199,
-0.003934820092767034,
0.003873116772197208,
0.003782673561269822,
-0.0036062597892895726,
-0.0031582706953591977,
0.0031311301606351096,
0.0029941984530919247,
-0.002982090016991598,
0.0026460789863050073,
-0.002477307801905816,
0.0024717930943436873,
-0.0024238747196642465,
-0.002155738026643016,
0.002141391230711353,
-0.002031701661096755,
0.0019974436604482705,
0.001734777386707204,
0.001703579931669165,
0.001667790210739359,
-0.0016339576697830442,
0.0015612246902648882,
0.001454160496937913,
0.0013053367355766261,
0.0012595582183060013,
-0.0012550361890187813,
0.0011314375317365473,
-0.0009790373067506098,
0.0009781059082623503,
-0.0009340593739371806,
0.0008626922909598323,
-0.0008525210079739737,
0.0008200175109281157,
0.0007742972846352102,
0.000634681615488624,
-0.0005686145289148964,
-0.00049249339251572,
0.00043582391472258533,
0.0003743777155467678,
0.00032110797381090084,
-0.0003101428193102582,
-0.0002871690750178438,
0.0002781293529883278,
0.00026388506259998796,
0.00024890524758888196,
0.00020617849532420554,
-0.00014036344930312765,
0.00013800152711793235,
-0.00013497732477983434,
5.1963450347166714e-05,
-5.028081642881631e-05,
-2.713524182227632e-05,
2.6046201282964235e-05,
2.2394746712849732e-05,
-2.1618414201022878e-05,
2.072275379536942e-05,
1.978688000465427e-05,
-1.064613814829422e-05,
-4.102132510061448e-06,
7.522119900140811e-17,
-3.3049473119902962e-18,
5.682714835096438e-19
],
"Absolute Coefficient": [
0.11567172212331296,
0.07926700326444669,
0.07527942560466135,
0.05481130866730835,
0.052568633469443196,
0.045641518114452564,
0.04349042618075248,
0.042528007953237745,
0.038224289917285895,
0.03730539048044822,
0.03639352897291266,
0.03424758559451051,
0.03373741074517173,
0.033471513953817686,
0.03296568522611585,
0.031356458926106834,
0.03120631444378636,
0.030416727333008094,
0.030289871092727738,
0.03024189696415583,
0.030106499668239414,
0.02883884714548099,
0.028356746888864786,
0.027040181123762826,
0.02617623396716568,
0.02563035293216983,
0.023881043310246257,
0.023027547382297606,
0.022672597747773086,
0.022656850633593018,
0.022099875749021378,
0.021946951619119828,
0.021744715508057722,
0.021713081650987908,
0.021492772803287968,
0.020153783017268802,
0.019898964813476274,
0.019652709014680952,
0.019514471668602016,
0.01904980942656495,
0.018385461066014623,
0.018071942020741673,
0.017994034887119925,
0.017779816107035964,
0.01768235640566476,
0.017316983509405425,
0.017268267988779784,
0.01690017370458688,
0.01631444460440681,
0.015097281503686437,
0.014732759960851008,
0.014637187278971186,
0.014056037709504844,
0.013708014564696034,
0.013637086507099534,
0.013239665674097028,
0.013012116332819066,
0.012772927492207542,
0.011325289711245341,
0.011188710313763712,
0.01054989204760798,
0.010447886114492334,
0.010439273937254835,
0.010307111027285844,
0.010224818081193262,
0.010005931277802546,
0.009895252307018206,
0.009535684326551563,
0.009138450222989964,
0.00898754726721883,
0.008753028697638271,
0.008721544283469778,
0.008486485318179087,
0.008384401274990244,
0.00827792340384226,
0.007764101406088284,
0.007568916245947189,
0.007501093591404458,
0.0074556684220718995,
0.007397222521395875,
0.00735383168577062,
0.007344407031578251,
0.007259717006521077,
0.0071449645863958374,
0.006926992784261744,
0.006886359935321471,
0.006868151201125821,
0.006847128723135578,
0.006762440499231255,
0.00661374293068826,
0.006256959215414302,
0.006168165955192134,
0.005860851925989021,
0.005857437056739691,
0.005685688083022712,
0.005633830758384729,
0.005600349853478263,
0.005431206798889247,
0.005341740989538102,
0.005169501912463518,
0.00513404727692727,
0.004362382368660257,
0.003986279315282199,
0.003934820092767034,
0.003873116772197208,
0.003782673561269822,
0.0036062597892895726,
0.0031582706953591977,
0.0031311301606351096,
0.0029941984530919247,
0.002982090016991598,
0.0026460789863050073,
0.002477307801905816,
0.0024717930943436873,
0.0024238747196642465,
0.002155738026643016,
0.002141391230711353,
0.002031701661096755,
0.0019974436604482705,
0.001734777386707204,
0.001703579931669165,
0.001667790210739359,
0.0016339576697830442,
0.0015612246902648882,
0.001454160496937913,
0.0013053367355766261,
0.0012595582183060013,
0.0012550361890187813,
0.0011314375317365473,
0.0009790373067506098,
0.0009781059082623503,
0.0009340593739371806,
0.0008626922909598323,
0.0008525210079739737,
0.0008200175109281157,
0.0007742972846352102,
0.000634681615488624,
0.0005686145289148964,
0.00049249339251572,
0.00043582391472258533,
0.0003743777155467678,
0.00032110797381090084,
0.0003101428193102582,
0.0002871690750178438,
0.0002781293529883278,
0.00026388506259998796,
0.00024890524758888196,
0.00020617849532420554,
0.00014036344930312765,
0.00013800152711793235,
0.00013497732477983434,
5.1963450347166714e-05,
5.028081642881631e-05,
2.713524182227632e-05,
2.6046201282964235e-05,
2.2394746712849732e-05,
2.1618414201022878e-05,
2.072275379536942e-05,
1.978688000465427e-05,
1.064613814829422e-05,
4.102132510061448e-06,
7.522119900140811e-17,
3.3049473119902962e-18,
5.682714835096438e-19
]
},
"cv_performance": {
"prediction": {
"accuracy": 56.36363636363636,
"precision": 60.65656565656566,
"recall": 90.0,
"f1": 71.06209150326796
},
"selection": {
"precision": 1.032152404045061,
"recall": 7.619047619047619,
"f1": 1.8156661182927238,
"jaccard": 0.9165632971333103
}
}
}