GenoTEX / output /regress /Fibromyalgia /significant_genes_condition_Migraine.json
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{
"significant_genes": {
"Variable": [
"PARD3B",
"LTA4H",
"MFSD3",
"ANKRD20A11P",
"NDC1",
"HTN1",
"CCDC170",
"HLA-L",
"RGS17",
"NEIL1",
"ENC1",
"MIR9-1",
"PGM5P2",
"FAM24A",
"STXBP1",
"LCT",
"CADPS",
"IL13",
"ITSN1",
"KAT2B",
"DCPS",
"NUDC",
"FAM167A-AS1",
"MARCHF8",
"HTN3",
"AKAP12",
"IFT122",
"TMEM255B",
"BLVRA",
"TNKS1BP1",
"CPT1A",
"ELAPOR1",
"ZNF620",
"TTLL7",
"PIDD1",
"CROCC",
"HLA-DPB2",
"HLA-DQB1",
"SLC25A34",
"OR1N1",
"OR10A7",
"MDS2",
"RDH5",
"UQCC3",
"PGC",
"TXNDC11",
"FKBPL",
"IFNE",
"LRRC43",
"SMAD9",
"ICA1L",
"ECRG4",
"CPA3",
"MROH8",
"AFAP1L2",
"VWA5B2",
"ATOH8",
"KIAA1656",
"PTGDS",
"APBB2",
"NBPF22P",
"DERL3",
"MTNR1B",
"SPHK1",
"LINC02912",
"GSDME",
"MYH1",
"CFD",
"NAPSB",
"ELL3",
"MRPL38",
"NEFL",
"ZNF20",
"TBX6",
"TGFB2",
"NOVA1",
"OSGIN1",
"ZFP90",
"RRH",
"MST1",
"C14orf93",
"CYP26B1",
"MMP12",
"ATP2B3",
"SERINC2",
"DVL2",
"C1orf174",
"HTR3B",
"TCEAL1",
"DEFB119",
"F7",
"CDS1",
"DRICH1",
"CCR9",
"HMGN2P46",
"LRIG3",
"G0S2",
"EHHADH",
"COL4A6",
"CYP27A1",
"SCG3",
"TTC41P",
"MCAM",
"EWSAT1",
"SLC25A47",
"LINC00272",
"POC1A",
"JAKMIP3",
"SPINK2",
"GCHFR",
"ADGRL1",
"ITGB8",
"EBI3",
"PTP4A3",
"TXNDC8",
"CLLU1",
"CCNI",
"TPO",
"IL3RA",
"CCDC146",
"ADAMTS5",
"C9orf40",
"MIR205",
"CFAP53",
"ADH6",
"LRRC23",
"DOCK3",
"SCARNA8",
"AP1M2",
"MEDAG",
"OR4A16",
"TIGD1",
"MIR205HG"
],
"Coefficient": [
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0.05481652737796524,
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0.040380097110788424,
0.03998101985151625,
0.03836229428602785,
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0.03504421156419973,
-0.032425803986890926,
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-0.03159210432955664,
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0.029090743024402524,
0.028570481847818883,
-0.027721284863185047,
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0.01209173519291428,
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0.01066673203965505,
0.01056051723612434,
0.010375582291239279,
-0.010338670282124401,
0.010288922034827978,
-0.01010614903065858,
0.009161155684709956,
-0.009000348566750156,
-0.00867683928619782,
-0.008433784256785329,
0.00842856084515508,
-0.008228977541626768,
-0.008038631606817706,
0.00792092176077976,
0.007920782854398949,
0.007781171423884457,
-0.007681792382039387,
0.007515567894933927,
-0.007513819193105749,
-0.007500972821906699,
0.007083091272687357,
0.0069754728520462295,
0.006942721699800231,
0.006934900485416289,
-0.006684872170532928,
0.006538538716289485,
0.006221649521509276,
-0.006182184151581626,
0.006076888232361097,
0.006008669515322582,
0.005945736076853759,
-0.005879043200666087,
-0.005795078957024625,
-0.005642783283981958,
-0.004594022602773175,
0.00438927871965526,
0.004370851996868412,
0.004147212952158254,
0.003999488880327856,
0.0038449228915360674,
0.0037483172855447017,
0.0036797384325143534,
-0.003672077211411093,
-0.0036486334691917723,
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0.002997002589272073,
0.002996275717507681,
-0.0024879302445263794,
-0.0018733076134860992,
-0.0018150832338434393,
0.0015052434782550663,
0.0013863895111454472,
-0.0013826306977896678,
0.001307533720050548,
-0.0012966940439737772,
0.0009083437603261902,
-0.0008133594682365698,
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-0.0004808449163575544,
-0.00021101565594672714,
-0.00019882948030026178,
1.3447771847572318e-16
],
"Absolute Coefficient": [
0.0672369705257386,
0.06258523812267325,
0.05868966379150818,
0.05684986776999012,
0.05481652737796524,
0.05191580739227532,
0.05138001060636905,
0.04921225450219485,
0.04692578727266947,
0.04580855925081524,
0.0447592195988876,
0.04296844402214307,
0.041760307747162065,
0.040380097110788424,
0.03998101985151625,
0.03836229428602785,
0.03516409925285641,
0.03504421156419973,
0.032425803986890926,
0.032217537548445446,
0.03159210432955664,
0.03057559712548114,
0.029090743024402524,
0.028570481847818883,
0.027721284863185047,
0.027623640167750627,
0.02624372362902856,
0.025729568258706002,
0.025562443917696454,
0.02553399498247181,
0.02531331670377198,
0.02439075737673744,
0.023226025247993252,
0.021393633977984442,
0.021295683864619646,
0.02073962593675124,
0.020713957409577793,
0.019854013784972372,
0.01908823272764413,
0.018357165604837487,
0.01829140107161663,
0.01813454735587278,
0.018056439397588067,
0.017962305970157216,
0.017791944785872274,
0.01777213664773118,
0.01721570094815,
0.017089732985757413,
0.016451449995671795,
0.016434170192721788,
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0.016249150593444586,
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0.015443219548809773,
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]
},
"cv_performance": {
"prediction": {
"accuracy": 65.71428571428571,
"precision": 63.06060606060606,
"recall": 62.012987012987004,
"f1": 62.00225062294028
},
"selection": {
"precision": 0.19417475728155337,
"recall": 0.5128205128205128,
"f1": 0.2816901408450704,
"jaccard": 0.14184397163120568
}
}
}