GenoTEX / output /regress /Fibromyalgia /significant_genes_condition_Epilepsy.json
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{
"significant_genes": {
"Variable": [
"ANKRD20A11P",
"LTA4H",
"CCDC170",
"PARD3B",
"ENC1",
"HLA-L",
"NEIL1",
"MIR9-1",
"NDC1",
"LCT",
"MFSD3",
"FAM24A",
"STXBP1",
"HTN1",
"IFT122",
"ITSN1",
"PGM5P2",
"CADPS",
"ELAPOR1",
"NUDC",
"OR1N1",
"KAT2B",
"AKAP12",
"TMEM255B",
"TTLL7",
"FAM167A-AS1",
"HLA-DQB1",
"IFNE",
"DCPS",
"BLVRA",
"RGS17",
"IL13",
"MYH1",
"APBB2",
"VWA5B2",
"MDS2",
"MARCHF8",
"OR10A7",
"GSDME",
"CPT1A",
"CYP27A1",
"NAPSB",
"TXNDC11",
"UQCC3",
"ATOH8",
"TNKS1BP1",
"SLC25A34",
"ELL3",
"COL4A6",
"POC1A",
"SPHK1",
"MMP12",
"JAKMIP3",
"IL3RA",
"CCNI",
"SCG3",
"RDH5",
"CFAP53",
"ITGB8",
"LRRC43",
"DERL3",
"PTP4A3",
"HLA-DPB2",
"CYP26B1",
"LINC02912",
"LRIG3",
"MST1",
"HTN3",
"RRH",
"LINC00272",
"AFAP1L2",
"ICA1L",
"CPA3",
"DRICH1",
"TBX6",
"C1orf174",
"MCAM",
"MROH8",
"CCDC146",
"TXNDC8",
"KIAA1656",
"MRPL38",
"TPO",
"C14orf93",
"HTR3B",
"MTNR1B",
"EHHADH",
"F7",
"EBI3",
"DEFB119",
"PIDD1",
"TRPM4",
"PTGDS",
"OSGIN1",
"DVL2",
"HMGN2P46",
"TTC41P",
"CROCC",
"SMAD9",
"LRRC23",
"NOVA1",
"LGI4",
"RAB11FIP3",
"ECRG4",
"DOCK3",
"CDS1",
"MEDAG",
"EWSAT1",
"RNF17",
"THOC3",
"NEFL",
"C9orf40",
"NBPF22P",
"CD93",
"ZNF620",
"SCARNA8",
"TCEAL1",
"COA1",
"CLLU1",
"TGFB2",
"PALLD",
"MOAP1",
"MFSD4A",
"APIP",
"FKBPL",
"NT5M",
"CAMKV",
"KTN1-AS1",
"HPCAL4",
"ZNF530",
"G0S2"
],
"Coefficient": [
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0.06476313813172128,
0.0589396896904883,
0.05418259719030768,
-0.05094088538131378,
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0.037573188628499885,
0.03641437941187949,
-0.03536142808861907,
-0.035020479545443996,
-0.03414500579669874,
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-0.03095300105388369,
-0.03073599298259777,
-0.03004488766315692,
0.029473990696018297,
0.02801034357665391,
0.027267438028730502,
-0.025609873237501222,
-0.02546846309984584,
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-0.022772929118455444,
0.02240743493278209,
-0.021825511057827904,
0.021803819799013916,
0.021554844591094375,
0.021452864330784666,
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0.018057582719881473,
-0.017960006446092046,
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0.016509110845222604,
0.015969435521910404,
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-0.014749675851989927,
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-0.01446995029921007,
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-0.013731924727231512,
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-0.01262589118562738,
-0.012612772460774137,
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-0.012347441419859575,
0.011975871777599881,
0.011819456875264542,
0.01162534200140754,
-0.011038558526264043,
-0.01098497311743725,
0.010915755804296315,
-0.010781873990949339,
-0.010609987403809449,
-0.010435566371127136,
0.010298527133429885,
0.009984502891766691,
0.00970693911103284,
-0.009593906337739594,
-0.009233181559073284,
-0.009104317533287302,
-0.008777472995126866,
0.008685411126235032,
0.008647387030041333,
0.008589507257689005,
-0.008483439105649734,
-0.008436584565508087,
-0.008369841191210852,
0.008167316368161762,
0.008005850401519146,
-0.007946429659624586,
0.007815784403003631,
0.007717770683762841,
0.00747890926122272,
-0.007129726575702796,
-0.007004419126044285,
-0.006816067025449962,
0.006758396309543984,
-0.006566769471945751,
0.006539575828039283,
-0.0065112744673273765,
-0.0061603220802911975,
0.0059857266343012056,
-0.005926908844649042,
0.005815352097897843,
-0.00579425520883223,
0.00565668020715644,
0.005182470751821468,
-0.004916886192376886,
-0.00484397100407524,
-0.00458429783058204,
0.004003657408402405,
0.0034389262929875376,
0.0032596271716657348,
-0.0028798128093795172,
0.00285039186206353,
-0.002697230442512801,
-0.0026766300722810836,
-0.0021811608016243786,
0.0017709098693105122,
-0.0017368583826901914,
-0.0017312703360288643,
-0.0011769166500197091,
0.00116616196755276,
0.0011192289292768888,
0.0011022144101248711,
0.0008203400688539166,
0.0006315231506559283,
0.0005907283012995577,
-0.0004946525416872662,
0.00015122111025165085,
1.9490377705786777e-05,
-1.743929017034409e-05
],
"Absolute Coefficient": [
0.0666540277367779,
0.06476313813172128,
0.0589396896904883,
0.05418259719030768,
0.05094088538131378,
0.04756907741158488,
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0.04649048901662978,
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0.043447852115791497,
0.04341996817016055,
0.04301810149318499,
0.04113533516437828,
0.037573188628499885,
0.03641437941187949,
0.03536142808861907,
0.035020479545443996,
0.03414500579669874,
0.033469913863439366,
0.032947630236906764,
0.03264210735426557,
0.03149733007732488,
0.03095300105388369,
0.03073599298259777,
0.03004488766315692,
0.029473990696018297,
0.02801034357665391,
0.027267438028730502,
0.025609873237501222,
0.02546846309984584,
0.024863164807718365,
0.024440622456017268,
0.022772929118455444,
0.02240743493278209,
0.021825511057827904,
0.021803819799013916,
0.021554844591094375,
0.021452864330784666,
0.021048458999201224,
0.020787784987725266,
0.020039761937075025,
0.020011357459556674,
0.01996385033561687,
0.019282676178765588,
0.018057582719881473,
0.017960006446092046,
0.01693523045415746,
0.016509110845222604,
0.015969435521910404,
0.0151679288209493,
0.015013959270637227,
0.014991489903269518,
0.01490670872474184,
0.014749675851989927,
0.014626248730222894,
0.01446995029921007,
0.014082863575078423,
0.013731924727231512,
0.01366058026540245,
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0.002697230442512801,
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0.0021811608016243786,
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1.9490377705786777e-05,
1.743929017034409e-05
]
},
"cv_performance": {
"prediction": {
"accuracy": 68.57142857142857,
"precision": 66.24009324009323,
"recall": 64.87012987012986,
"f1": 65.37660959729925
},
"selection": {
"precision": 0.18691588785046725,
"recall": 0.5128205128205128,
"f1": 0.273972602739726,
"jaccard": 0.13793103448275862
}
}
}