GenoTEX / output /regress /Fibromyalgia /significant_genes_condition_None.json
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{
"significant_genes": {
"Variable": [
"ANKRD20A11P",
"LTA4H",
"CCDC170",
"PARD3B",
"ENC1",
"NEIL1",
"MIR9-1",
"HLA-L",
"FAM24A",
"MFSD3",
"LCT",
"NDC1",
"STXBP1",
"HTN1",
"ITSN1",
"IFT122",
"PGM5P2",
"CADPS",
"OR1N1",
"ELAPOR1",
"KAT2B",
"TMEM255B",
"NUDC",
"AKAP12",
"HLA-DQB1",
"FAM167A-AS1",
"TTLL7",
"IFNE",
"BLVRA",
"IL13",
"DCPS",
"RGS17",
"MDS2",
"TXNDC11",
"APBB2",
"GSDME",
"CYP27A1",
"VWA5B2",
"MARCHF8",
"CPT1A",
"MYH1",
"OR10A7",
"UQCC3",
"NAPSB",
"ATOH8",
"MMP12",
"CCNI",
"SLC25A34",
"SCG3",
"POC1A",
"IL3RA",
"ELL3",
"TNKS1BP1",
"ITGB8",
"COL4A6",
"RDH5",
"HLA-DPB2",
"SPHK1",
"PTP4A3",
"DERL3",
"LRRC43",
"JAKMIP3",
"LINC02912",
"HTN3",
"CYP26B1",
"ICA1L",
"CFAP53",
"MST1",
"MRPL38",
"RRH",
"C1orf174",
"LINC00272",
"AFAP1L2",
"TXNDC8",
"TBX6",
"DRICH1",
"LRIG3",
"CPA3",
"CCDC146",
"C14orf93",
"KIAA1656",
"MROH8",
"SMAD9",
"OSGIN1",
"ECRG4",
"F7",
"CROCC",
"HTR3B",
"EBI3",
"MCAM",
"MTNR1B",
"TRPM4",
"PIDD1",
"DVL2",
"DOCK3",
"LRRC23",
"TPO",
"LGI4",
"TTC41P",
"NOVA1",
"HMGN2P46",
"EHHADH",
"DEFB119",
"PTGDS",
"EWSAT1",
"RAB11FIP3",
"RNF17",
"CDS1",
"C9orf40",
"MFSD4A",
"THOC3",
"ZNF620",
"NEFL",
"FKBPL",
"CLLU1",
"CD93",
"TGFB2",
"LYG1",
"TCEAL1",
"SEMA3A",
"CCR9",
"HPCAL4",
"SCARNA8",
"KTN1-AS1",
"PALLD",
"FOXRED1",
"JOSD2",
"COA1"
],
"Coefficient": [
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0.06382339160705962,
0.06104477159482691,
0.053928548835236075,
-0.05082436365307499,
0.047875350599995356,
0.04763490913040025,
0.046732460362847804,
0.04398518779891238,
-0.04317091018539303,
0.04220557230036927,
0.041007228574037546,
0.04009609810852076,
0.03886538434806825,
-0.037941391043704,
0.03711417327326859,
-0.03662292122104188,
-0.03560305730067369,
0.035509688161061696,
0.03537074030479307,
0.03225233610534517,
-0.0302968912901975,
0.029901628455999387,
-0.028380711177450432,
0.028235097405236814,
0.028106078499746584,
-0.027703409888679215,
0.02757262093666865,
-0.025860942514897563,
0.025200399364206438,
-0.02460216533720871,
0.02407144623748061,
0.02306016847050887,
-0.022567646360128348,
0.021576185136997016,
0.021131266768097706,
0.020593584453944734,
-0.020384819320541196,
0.020350103643223764,
0.020299451123772627,
-0.02026192385267549,
0.02008097801992588,
-0.020052674081059454,
-0.01985589811905964,
0.017672169744332267,
0.017066594255050235,
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0.016590879610542383,
-0.016363331249354376,
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-0.016137055795199196,
0.015970592138411822,
-0.015918179943350336,
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0.015080522088432765,
0.014819519949193909,
0.013905755520894385,
0.013800850789233224,
-0.01355083139597744,
-0.013252558450033284,
0.0131553386982393,
0.01307012294376952,
0.012890981167811495,
-0.012874330893118313,
-0.012618775717849612,
-0.012602761709796795,
-0.01205738552809724,
0.011323187705679746,
0.011174301508951325,
-0.010915059448634008,
0.01072494023753282,
0.0106463142930237,
-0.010167970137779493,
-0.009904970880815456,
0.00982578313221012,
0.009773627948709623,
0.009503407660473043,
-0.009323117242488615,
-0.00886932107259575,
-0.008710719653161211,
0.00869637469128397,
-0.008644710865659726,
-0.008175333637256811,
-0.00817334335104497,
-0.008096612944204664,
0.0080535589396627,
0.007924380811869573,
-0.007853275673233304,
-0.007756016353695377,
-0.007725356452032484,
-0.0077159553885983445,
0.007620419964510426,
0.007573209328913744,
-0.007333347872284224,
0.007128392238223986,
-0.00685641502521016,
0.006676930745541819,
-0.006621145063352971,
-0.006525861548046459,
0.006485664727894808,
0.006356050273509017,
0.006327373805865541,
0.006233571832909028,
-0.006228661606332496,
-0.005511784785155967,
0.005029881373499386,
-0.004321604759476923,
0.003493303296260503,
0.003160861835850744,
0.003104371373287703,
0.002806443344169484,
-0.0027432719463635308,
0.002249932458851265,
0.0022483333716545794,
-0.0021817040540721725,
0.0021183563375978894,
-0.001993590615899098,
0.001926860189494187,
-0.0018684987837407133,
0.001721935523754388,
-0.001671533619088916,
0.0016363452598267276,
-0.001095162248530895,
-0.0004651432439397272,
-0.0002871982006649489,
0.0001577205311958038,
0.00014234203169392244,
5.0597811015415656e-05
],
"Absolute Coefficient": [
0.0665868745300767,
0.06382339160705962,
0.06104477159482691,
0.053928548835236075,
0.05082436365307499,
0.047875350599995356,
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0.046732460362847804,
0.04398518779891238,
0.04317091018539303,
0.04220557230036927,
0.041007228574037546,
0.04009609810852076,
0.03886538434806825,
0.037941391043704,
0.03711417327326859,
0.03662292122104188,
0.03560305730067369,
0.035509688161061696,
0.03537074030479307,
0.03225233610534517,
0.0302968912901975,
0.029901628455999387,
0.028380711177450432,
0.028235097405236814,
0.028106078499746584,
0.027703409888679215,
0.02757262093666865,
0.025860942514897563,
0.025200399364206438,
0.02460216533720871,
0.02407144623748061,
0.02306016847050887,
0.022567646360128348,
0.021576185136997016,
0.021131266768097706,
0.020593584453944734,
0.020384819320541196,
0.020350103643223764,
0.020299451123772627,
0.02026192385267549,
0.02008097801992588,
0.020052674081059454,
0.01985589811905964,
0.017672169744332267,
0.017066594255050235,
0.017053565524181618,
0.016590879610542383,
0.016363331249354376,
0.016304139121156844,
0.016137055795199196,
0.015970592138411822,
0.015918179943350336,
0.015361480779546959,
0.015080522088432765,
0.014819519949193909,
0.013905755520894385,
0.013800850789233224,
0.01355083139597744,
0.013252558450033284,
0.0131553386982393,
0.01307012294376952,
0.012890981167811495,
0.012874330893118313,
0.012618775717849612,
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0.011174301508951325,
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0.0022483333716545794,
0.0021817040540721725,
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0.001721935523754388,
0.001671533619088916,
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0.001095162248530895,
0.0004651432439397272,
0.0002871982006649489,
0.0001577205311958038,
0.00014234203169392244,
5.0597811015415656e-05
]
},
"cv_performance": {
"prediction": {
"accuracy": 67.85714285714286,
"precision": 65.34265734265735,
"recall": 64.87012987012986,
"f1": 64.97774919843884
},
"selection": {
"precision": 0.19230769230769232,
"recall": 0.5128205128205128,
"f1": 0.2797202797202797,
"jaccard": 0.14084507042253522
}
}
}