GenoTEX / output /regress /LDL_Cholesterol_Levels /significant_genes_condition_None.json
Liu-Hy's picture
Add files using upload-large-folder tool
ad48107 verified
{
"significant_genes": {
"Variable": [
"COL15A1",
"TBXA2R",
"CDH13",
"OR5B2",
"LRRN3",
"MND1",
"ADRA2B",
"PLVAP",
"EPCIP",
"DIPK2B",
"MAP2K1",
"SYT10",
"CCL23",
"SLC27A6",
"AGBL4",
"SLC26A10P",
"ASIC2",
"OR4F17",
"TEX26",
"THBS4",
"LINC00305",
"PLPPR2",
"ZAN",
"TTTY17B",
"MTHFD1L",
"CATSPER2",
"PRORSD1P",
"LINC02875",
"EPHB1",
"GALNT13",
"RSPH10B2",
"IFNA8",
"VPS45",
"NOL4",
"LINC03042",
"PROK2",
"KRTAP9-4",
"KRTAP4-11",
"APLN",
"PKN3",
"LINC01553",
"KRTAP17-1",
"PRRT3",
"SOX10",
"FAM83F",
"DUSP6",
"HDAC11",
"PKD2L2",
"DHRS7C",
"GPR83",
"MS4A5",
"RFPL1",
"DBH",
"FLJ13224",
"ZNF2",
"ADCYAP1R1",
"LRATD1",
"TTL",
"KDM4E",
"PTPRR",
"TRIB1",
"STX1A",
"ZBTB45",
"FAM163A",
"CCR9",
"AMIGO3",
"MIP",
"PNP",
"OR6V1",
"PGLYRP4",
"TIGD5",
"TIMM29",
"ZNF449",
"PMS2",
"C9orf163",
"OR9G4",
"ZNF775",
"POU4F1",
"POLM",
"KRT27",
"PZP",
"PAK5",
"CSF3",
"AMPD1",
"CAPN11",
"PHLDA1",
"PCSK2",
"WNT9B",
"CLEC18A",
"HOXA13",
"CETP",
"OR9A4",
"HPCA",
"TSPAN7",
"MAG",
"ZIC2",
"GOLGA2P3Y",
"HEXA-AS1",
"PRG3",
"TDRD1",
"BEST4",
"SERPINB10",
"PODNL1",
"KCNN2",
"PRIMA1",
"HMGXB3",
"TPH2",
"NVL",
"SETD4",
"STC2",
"ECE1",
"MRPL42P5",
"MYO15B",
"PTCRA",
"CABIN1",
"BCAN",
"AP5Z1",
"B3GALNT2",
"TNFRSF25",
"CHIC2",
"MKRN3",
"ANO4",
"KRTAP1-1",
"PMS1",
"EGR3",
"RASSF10",
"SIX4",
"SIX1",
"TARBP1"
],
"Coefficient": [
0.045499382953571234,
-0.03849442486619983,
0.03509265595249244,
0.022594473431693806,
-0.018948251570216387,
0.018791095502726864,
-0.016237213137738633,
0.016010782499289222,
-0.015248267738507345,
0.014329912921151104,
-0.014311624862450188,
-0.01348216232964922,
-0.013153418453633336,
-0.011004287583577058,
-0.010552691716779467,
0.010046947012637687,
0.009631335338330814,
0.009325304075822972,
-0.008385037018367496,
0.0079319164002085,
0.007827822767031867,
0.00761235677715378,
-0.007459246484706791,
0.007312581883297632,
0.007290686106344371,
0.007187368773427887,
0.006796455939065147,
0.006752519736940439,
-0.006693719520770577,
0.006684472823356854,
-0.006649759314484127,
-0.006301655687912932,
0.006297162706500313,
-0.0059031188837918415,
0.005649627589803434,
-0.0055560645388155585,
0.005283468297231764,
-0.005144239900604185,
0.005028117354909589,
0.0049039335760024385,
-0.0048929363225493705,
0.004747563583674721,
0.004628298604267325,
-0.0044840015684912,
-0.004469791969873324,
-0.004367913678873635,
0.004285529112326059,
0.0042524502216280445,
-0.004048391179101064,
-0.004035256445255672,
-0.0038095681299088967,
-0.0038094451731283084,
-0.0035555690251475305,
0.0033363346385118847,
0.003212127670055787,
-0.003171899178219857,
-0.003153420386222674,
0.0028087143407709214,
0.0027361921848746123,
0.002656993416019884,
-0.0026508268400085872,
0.002628402902056628,
0.002574932349722269,
-0.002564521593758901,
-0.0025145572415217255,
0.002440657826931564,
-0.0022322857186804295,
-0.0022008381748731135,
-0.002144832788134264,
0.002107770581480472,
0.0020942762051276882,
0.002070077982575948,
0.002064893834484844,
0.0020196420287931557,
0.001982858588655685,
-0.0018520381178282555,
0.0018357239206402412,
0.0017878555723954926,
0.0017784732582926746,
0.0017658855488167189,
-0.0017540592861170104,
-0.0016769439295822302,
-0.0015537404194479857,
-0.0015496893276027862,
0.0015049163091072635,
-0.0014988129811720323,
-0.0014205836429759648,
0.0013375239763486861,
0.0013291177758003665,
0.0013043214096275146,
-0.0012987338432650997,
0.0012600479155023938,
0.001205326827426382,
-0.0011835205521754553,
-0.0011833375069896194,
0.001160282082582512,
0.0010618460952326043,
0.0010417216554104646,
-0.0009675936072324564,
-0.0009372163866124583,
0.0008297741576841383,
-0.0007942689325841603,
0.0007927051521788724,
-0.000773494760401551,
-0.000765529503540891,
0.0007556333389050871,
-0.0007314344198645691,
0.000658913677066721,
0.0005767755723929943,
0.0005653147655662716,
-0.0005599712543870224,
0.0005467321875929497,
0.0005214183950251369,
-0.0005024058418873613,
0.00047964554811608605,
0.0004676449121957854,
0.00043972500695117046,
0.0004240745926787628,
0.00038887696962159533,
-0.0003364657642590067,
0.0003246173191877295,
0.00025894037891036314,
-0.00025813873390398683,
0.00023983061089962585,
-0.00010169485113853458,
9.287513257924377e-05,
8.941631451037509e-05,
8.578391626149802e-05,
2.6916721036134024e-07
],
"Absolute Coefficient": [
0.045499382953571234,
0.03849442486619983,
0.03509265595249244,
0.022594473431693806,
0.018948251570216387,
0.018791095502726864,
0.016237213137738633,
0.016010782499289222,
0.015248267738507345,
0.014329912921151104,
0.014311624862450188,
0.01348216232964922,
0.013153418453633336,
0.011004287583577058,
0.010552691716779467,
0.010046947012637687,
0.009631335338330814,
0.009325304075822972,
0.008385037018367496,
0.0079319164002085,
0.007827822767031867,
0.00761235677715378,
0.007459246484706791,
0.007312581883297632,
0.007290686106344371,
0.007187368773427887,
0.006796455939065147,
0.006752519736940439,
0.006693719520770577,
0.006684472823356854,
0.006649759314484127,
0.006301655687912932,
0.006297162706500313,
0.0059031188837918415,
0.005649627589803434,
0.0055560645388155585,
0.005283468297231764,
0.005144239900604185,
0.005028117354909589,
0.0049039335760024385,
0.0048929363225493705,
0.004747563583674721,
0.004628298604267325,
0.0044840015684912,
0.004469791969873324,
0.004367913678873635,
0.004285529112326059,
0.0042524502216280445,
0.004048391179101064,
0.004035256445255672,
0.0038095681299088967,
0.0038094451731283084,
0.0035555690251475305,
0.0033363346385118847,
0.003212127670055787,
0.003171899178219857,
0.003153420386222674,
0.0028087143407709214,
0.0027361921848746123,
0.002656993416019884,
0.0026508268400085872,
0.002628402902056628,
0.002574932349722269,
0.002564521593758901,
0.0025145572415217255,
0.002440657826931564,
0.0022322857186804295,
0.0022008381748731135,
0.002144832788134264,
0.002107770581480472,
0.0020942762051276882,
0.002070077982575948,
0.002064893834484844,
0.0020196420287931557,
0.001982858588655685,
0.0018520381178282555,
0.0018357239206402412,
0.0017878555723954926,
0.0017784732582926746,
0.0017658855488167189,
0.0017540592861170104,
0.0016769439295822302,
0.0015537404194479857,
0.0015496893276027862,
0.0015049163091072635,
0.0014988129811720323,
0.0014205836429759648,
0.0013375239763486861,
0.0013291177758003665,
0.0013043214096275146,
0.0012987338432650997,
0.0012600479155023938,
0.001205326827426382,
0.0011835205521754553,
0.0011833375069896194,
0.001160282082582512,
0.0010618460952326043,
0.0010417216554104646,
0.0009675936072324564,
0.0009372163866124583,
0.0008297741576841383,
0.0007942689325841603,
0.0007927051521788724,
0.000773494760401551,
0.000765529503540891,
0.0007556333389050871,
0.0007314344198645691,
0.000658913677066721,
0.0005767755723929943,
0.0005653147655662716,
0.0005599712543870224,
0.0005467321875929497,
0.0005214183950251369,
0.0005024058418873613,
0.00047964554811608605,
0.0004676449121957854,
0.00043972500695117046,
0.0004240745926787628,
0.00038887696962159533,
0.0003364657642590067,
0.0003246173191877295,
0.00025894037891036314,
0.00025813873390398683,
0.00023983061089962585,
0.00010169485113853458,
9.287513257924377e-05,
8.941631451037509e-05,
8.578391626149802e-05,
2.6916721036134024e-07
]
},
"cv_performance": {
"prediction": {
"accuracy": 98.57142857142857,
"precision": 99.71830985915493,
"recall": 98.66601353724641,
"f1": 99.18486804378254
},
"selection": {
"precision": 2.2996269701485796,
"recall": 0.7650273224043717,
"f1": 1.147299929166735,
"jaccard": 0.5771997132107598
}
}
}