GenoTEX / output /regress /Liver_cirrhosis /significant_genes_condition_Prostate_Cancer.json
Liu-Hy's picture
Add files using upload-large-folder tool
e670638 verified
{
"significant_genes": {
"Variable": [
"CDH13",
"COL15A1",
"TBXA2R",
"SYT10",
"ANGPTL7",
"OR4F17",
"MURC",
"EPS8L3",
"KCNK16",
"P2RX2",
"OR5B2",
"MTSS1L",
"OR5B17",
"PLVAP",
"FAM83F",
"ADAMTS1",
"CD276",
"HLA-DRB6",
"AK3L1",
"STX1A",
"CYR61",
"IFNA8",
"TP53TG5",
"KIR2DL1",
"OR6V1",
"ASPM",
"TERT",
"CAMK2N1",
"IL20RB",
"KDM4DL",
"TPH2",
"MS4A5",
"MYO15B",
"CCDC28B",
"C21orf62",
"FAM7A2",
"MVD",
"PCDH9",
"BEND4",
"SERPINB10",
"DBH",
"LOC729467",
"C10orf40",
"SNORD115-26",
"SLC27A6",
"TNMD",
"OR8J1",
"OR51A7",
"CDKL3",
"C18orf20",
"ADRA2B",
"FAM84A",
"NRXN1",
"ACOXL",
"OPN1MW",
"C14orf93",
"SCARNA9",
"ACCN1",
"MYOT",
"PISRT1",
"PWRN1",
"CETP",
"PSIMCT-1",
"DUSP28",
"DUSP27",
"MPV17L",
"SLITRK4",
"KIAA1875",
"RBMXL1",
"HCRTR2",
"GLP2R",
"TIGD5",
"SLC5A1",
"MIP",
"KRTAP4-11",
"FAM99B",
"AMPD1",
"CLEC18A",
"SNORA54",
"TDRD1",
"PTPRR",
"KRTAP1-1",
"PGLYRP4",
"SOX10",
"FAM163A",
"DPRX",
"NCAPG",
"GSG1L",
"TACR2",
"LHX6",
"THBS4",
"SLITRK2",
"MND1",
"SLC5A7",
"GPR83",
"SCGB1C1",
"OR9G4",
"GLYATL2",
"RPL13AP17",
"OR51F1",
"ZAN",
"SNORA51",
"HTR3C",
"CARTPT",
"RPA4",
"HAR1B",
"SNORA38B",
"HBG2",
"CRISP3",
"C21orf128",
"CLDN8",
"PHACTR3",
"CSF3",
"FAM74A3",
"TXNL4B",
"RSPH10B2",
"SYT4",
"LSS",
"SQLE",
"AQP3",
"DHRS7C",
"PXDN",
"NPAS4",
"PTCRA",
"CLEC4C",
"STATH",
"ZC3H8",
"SP6",
"PZP",
"FXC1",
"CCDC79",
"TMEFF1",
"NLGN4Y",
"VSTM1",
"HIST1H2BB",
"TTTY17B",
"FAM116B",
"VAMP1",
"C12orf74",
"KRT27",
"PRR21",
"TBC1D1",
"OR10G7",
"OR8J3",
"PCGF1",
"OR7D4",
"PPEF2",
"DOCK3",
"IL13",
"RNF122",
"C2orf63",
"OR1A2",
"HEBP1",
"HPS5"
],
"Coefficient": [
0.05201021403402462,
0.03467077120558793,
-0.030764614729831073,
-0.028584731718906582,
0.017955341080059806,
0.01749614172122027,
0.015324444732943978,
0.013430250025960927,
-0.012300259564056441,
0.012076035120465024,
0.011858550827108702,
-0.011801868079544964,
0.011717929582629003,
0.011628570672740953,
-0.011336221369410154,
-0.011013240846932835,
-0.010564420716569154,
-0.01042861716622787,
-0.010399233415321004,
0.009634619800102249,
-0.00953314646499292,
-0.009210896283368526,
-0.008465614419992518,
-0.007867571539721023,
-0.007604158235381956,
0.00747555977727974,
0.007471240728329794,
-0.0074483412400966256,
-0.007242835489027632,
0.007100283583918719,
-0.007034320943024916,
-0.006723888360568081,
0.006721663006398097,
0.006681682505018869,
-0.006533479020890084,
0.0065245904736943505,
0.0064136290847520375,
-0.006395247738083785,
-0.0062824849106657725,
-0.006237801793985861,
-0.006108424895896287,
0.005958551258136577,
-0.005887688405148211,
0.005861370592965863,
-0.005853671774400291,
0.005789439113939291,
-0.0056496581771962266,
0.005514785624087355,
0.005181784852467335,
0.005101685893706464,
-0.00505566875052025,
-0.004982757112224947,
-0.004819122607204701,
0.0047920814998883045,
-0.004702601943220218,
0.00464797500800455,
-0.004544362336563405,
0.004465638714111428,
-0.004403701273713421,
-0.004324456871485172,
0.004238194275034076,
-0.004146658938477407,
0.004081124677082388,
0.003957668422243393,
0.003937707377701694,
-0.0038219470758041494,
0.0037465622789532886,
0.0036572824264895303,
-0.0036396220739954178,
0.003626131076867542,
-0.00358398844275865,
0.0035764942379743238,
-0.003529424842126195,
-0.003524018863674094,
-0.0034958970349627983,
-0.003476065596770511,
-0.003433889247765814,
0.003368434414540746,
-0.0033134906928318913,
-0.0033029385535714106,
0.0032947677161524625,
-0.0032710504751123724,
0.003261408850011864,
-0.003217646480975656,
-0.0031409862299904604,
0.0030126266347372797,
0.0029434057396866115,
0.002933457054611235,
-0.0029179630842721235,
0.0028290348765129454,
0.002827125881344824,
-0.0028075698750285706,
0.0027758844427654516,
-0.002755690948916495,
-0.0027391558577616656,
0.002719711066710722,
-0.002692239802749016,
-0.002678235374722411,
0.0026524835051413725,
-0.0025835501942108124,
-0.0025550776142782374,
-0.0023710122228788304,
0.0020080084491629967,
0.0020001536381175386,
0.0019226669520318966,
-0.001864324022018176,
-0.0017027487732046438,
0.0016598778164894773,
0.0016155668920814963,
-0.0016020929393335524,
-0.0014600017051656757,
-0.001403701653874265,
-0.0013999963769506265,
-0.0013996608049720092,
0.0013695538421248034,
-0.001368281943804616,
-0.0013180944837941496,
0.0012976591477599437,
0.001270112695831554,
-0.0012516191787621193,
-0.0012199149735963308,
-0.0011478679079166135,
-0.0010321218014997051,
-0.0009768832711272754,
-0.000972776619048953,
-0.0009271348829404789,
0.0009026703534322381,
0.0008837243859706838,
-0.0007537546605273617,
0.0007157727792021645,
0.0006865930391834998,
0.0006377918777633056,
-0.0006088426129731721,
-0.0006050559502405443,
0.000578089930940972,
0.0005735323017850335,
0.0003990047685643792,
0.0003839719767431605,
-0.00036950862344968044,
0.0003586202688211944,
-0.0002787305396644172,
-0.00025764062271697874,
-0.0002569869240946033,
-0.00018784239385185228,
0.00017798342279709038,
-0.0001659721835235746,
-0.0001635031217094088,
0.0001392032738458151,
-0.00012938074639832985,
-9.664124864135064e-05,
9.141110180503366e-05,
-5.0170666765705314e-05,
-2.9959027518768926e-05,
-3.1290619581381812e-06
],
"Absolute Coefficient": [
0.05201021403402462,
0.03467077120558793,
0.030764614729831073,
0.028584731718906582,
0.017955341080059806,
0.01749614172122027,
0.015324444732943978,
0.013430250025960927,
0.012300259564056441,
0.012076035120465024,
0.011858550827108702,
0.011801868079544964,
0.011717929582629003,
0.011628570672740953,
0.011336221369410154,
0.011013240846932835,
0.010564420716569154,
0.01042861716622787,
0.010399233415321004,
0.009634619800102249,
0.00953314646499292,
0.009210896283368526,
0.008465614419992518,
0.007867571539721023,
0.007604158235381956,
0.00747555977727974,
0.007471240728329794,
0.0074483412400966256,
0.007242835489027632,
0.007100283583918719,
0.007034320943024916,
0.006723888360568081,
0.006721663006398097,
0.006681682505018869,
0.006533479020890084,
0.0065245904736943505,
0.0064136290847520375,
0.006395247738083785,
0.0062824849106657725,
0.006237801793985861,
0.006108424895896287,
0.005958551258136577,
0.005887688405148211,
0.005861370592965863,
0.005853671774400291,
0.005789439113939291,
0.0056496581771962266,
0.005514785624087355,
0.005181784852467335,
0.005101685893706464,
0.00505566875052025,
0.004982757112224947,
0.004819122607204701,
0.0047920814998883045,
0.004702601943220218,
0.00464797500800455,
0.004544362336563405,
0.004465638714111428,
0.004403701273713421,
0.004324456871485172,
0.004238194275034076,
0.004146658938477407,
0.004081124677082388,
0.003957668422243393,
0.003937707377701694,
0.0038219470758041494,
0.0037465622789532886,
0.0036572824264895303,
0.0036396220739954178,
0.003626131076867542,
0.00358398844275865,
0.0035764942379743238,
0.003529424842126195,
0.003524018863674094,
0.0034958970349627983,
0.003476065596770511,
0.003433889247765814,
0.003368434414540746,
0.0033134906928318913,
0.0033029385535714106,
0.0032947677161524625,
0.0032710504751123724,
0.003261408850011864,
0.003217646480975656,
0.0031409862299904604,
0.0030126266347372797,
0.0029434057396866115,
0.002933457054611235,
0.0029179630842721235,
0.0028290348765129454,
0.002827125881344824,
0.0028075698750285706,
0.0027758844427654516,
0.002755690948916495,
0.0027391558577616656,
0.002719711066710722,
0.002692239802749016,
0.002678235374722411,
0.0026524835051413725,
0.0025835501942108124,
0.0025550776142782374,
0.0023710122228788304,
0.0020080084491629967,
0.0020001536381175386,
0.0019226669520318966,
0.001864324022018176,
0.0017027487732046438,
0.0016598778164894773,
0.0016155668920814963,
0.0016020929393335524,
0.0014600017051656757,
0.001403701653874265,
0.0013999963769506265,
0.0013996608049720092,
0.0013695538421248034,
0.001368281943804616,
0.0013180944837941496,
0.0012976591477599437,
0.001270112695831554,
0.0012516191787621193,
0.0012199149735963308,
0.0011478679079166135,
0.0010321218014997051,
0.0009768832711272754,
0.000972776619048953,
0.0009271348829404789,
0.0009026703534322381,
0.0008837243859706838,
0.0007537546605273617,
0.0007157727792021645,
0.0006865930391834998,
0.0006377918777633056,
0.0006088426129731721,
0.0006050559502405443,
0.000578089930940972,
0.0005735323017850335,
0.0003990047685643792,
0.0003839719767431605,
0.00036950862344968044,
0.0003586202688211944,
0.0002787305396644172,
0.00025764062271697874,
0.0002569869240946033,
0.00018784239385185228,
0.00017798342279709038,
0.0001659721835235746,
0.0001635031217094088,
0.0001392032738458151,
0.00012938074639832985,
9.664124864135064e-05,
9.141110180503366e-05,
5.0170666765705314e-05,
2.9959027518768926e-05,
3.1290619581381812e-06
]
},
"cv_performance": {
"prediction": {
"accuracy": 98.0952380952381,
"precision": 99.43661971830986,
"recall": 98.37346182357302,
"f1": 98.89600612187792
},
"selection": {
"precision": 0.9062057844672967,
"recall": 1.3461538461538463,
"f1": 1.0804122930041906,
"jaccard": 0.5435707255683837
}
}
}