GenoTEX / output /regress /Melanoma /significant_genes_condition_None.json
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{
"significant_genes": {
"Variable": [
"STK11IP",
"CD163",
"IL6",
"ENTPD1",
"GMIP",
"VEGFC",
"MAGEC1",
"PSMB10",
"CCNO",
"EIF2B4",
"EZH2",
"MET",
"MMP7",
"CDKN1A",
"EPCAM",
"MAGEB2",
"GUSB",
"HLA-DQA2",
"GOT1",
"GNLY",
"FANCA",
"API5",
"CCL20",
"ANLN",
"TNFRSF17",
"IL11",
"IER3",
"CDKN1C",
"PIK3CA",
"PVR",
"TNFRSF11A",
"CHUK",
"KRAS",
"SREBF1",
"FSTL3",
"SF3A1",
"SAMD9",
"HDAC11",
"RPS6KB1",
"MAP3K12",
"SNAI1",
"IDO1",
"INHBA",
"TNF",
"CCNA1",
"COL11A2",
"MFGE8",
"REN",
"APC",
"P4HA2",
"TLR5",
"ARG2",
"CD79B",
"HERC6",
"PDK1",
"NFKB1",
"LDHA",
"BIRC3",
"MXI1",
"ALDOC",
"FCAR",
"MTOR",
"CCL8",
"TSLP",
"HSD11B1",
"MAGEA1",
"IKBKG",
"IFT70A",
"BRCA2",
"TNFRSF10C",
"TMUB2",
"CD209",
"E2F3",
"SFRP1",
"FUT4",
"WNT2",
"BRD4",
"IL11RA",
"CASP1",
"ICAM3",
"TNFSF8",
"BAX",
"ERBB2",
"THBD",
"HIF1A",
"SLC1A5",
"HDAC3",
"G6PD",
"MRE11",
"P2RY13",
"FADD",
"MAGEA12",
"MAP3K7"
],
"Coefficient": [
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-0.1464503682182673,
-0.1354556957074453,
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0.11560105790568326,
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0.0964789644350507,
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-0.08610333574699179,
0.08420476411690088,
-0.08108140554595618,
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0.07198191490353176,
0.0678192362240543,
0.06647715116973292,
0.06507957617459265,
0.06292343125850906,
-0.06230539528425805,
0.06218711450054874,
-0.05934390464694045,
0.0582329514521761,
-0.05345572388424111,
-0.05275295996468547,
-0.05175590946133917,
0.05034096613062946,
0.04877110183206414,
0.04803788149623263,
-0.04759013237023368,
0.04561666552441112,
0.04311928852269316,
0.042206770571725526,
-0.039488023917278424,
0.036244725623816726,
-0.03599162156669146,
0.03577306610542641,
0.03319475614705214,
0.03218982794787448,
0.0316062133821144,
0.031437134987531985,
-0.02867606459515742,
0.02713244623712171,
-0.02437844237030676,
-0.023231168944735835,
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0.020067052540438033,
-0.019914687157926197,
-0.019722277891170578,
0.019206546195939533,
-0.018880703560548287,
-0.01870484535286447,
0.018512530425942385,
0.018191908482032677,
-0.017557978614165026,
0.016724581301722486,
-0.016408528031018617,
0.01476049062929315,
-0.014398167828760735,
0.012865752836806015,
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0.012775301003566364,
-0.012248456704703382,
0.010422948134586104,
-0.010105252275890885,
0.009816647194386125,
0.009312408065045156,
0.009201559008415678,
0.00871858288884559,
-0.00861422415139896,
-0.007443375172789133,
0.007394810215380354,
0.006839754418014736,
0.006520878916418465,
0.006442265600639185,
-0.0064139941206812845,
0.005631582085473647,
-0.0055274772940714706,
-0.005448610752789327,
0.005243952280983136,
0.004435778996877466,
-0.004294770693109835,
0.0038042973912100686,
0.0030333890696636356,
-0.002285858628867437,
-0.0015623130571226628,
0.0013082882082572436,
0.0012830635794648653,
-0.0005954067888595141,
-5.329729180793031e-05
],
"Absolute Coefficient": [
0.17195229232043657,
0.1464503682182673,
0.1354556957074453,
0.12947098019734674,
0.11560105790568326,
0.11330262498715644,
0.11322041590985636,
0.10592751875479768,
0.0972291941132746,
0.0964789644350507,
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0.09464893611024834,
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0.08610333574699179,
0.08420476411690088,
0.08108140554595618,
0.07665480382242357,
0.07198191490353176,
0.0678192362240543,
0.06647715116973292,
0.06507957617459265,
0.06292343125850906,
0.06230539528425805,
0.06218711450054874,
0.05934390464694045,
0.0582329514521761,
0.05345572388424111,
0.05275295996468547,
0.05175590946133917,
0.05034096613062946,
0.04877110183206414,
0.04803788149623263,
0.04759013237023368,
0.04561666552441112,
0.04311928852269316,
0.042206770571725526,
0.039488023917278424,
0.036244725623816726,
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0.03577306610542641,
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0.0316062133821144,
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0.02867606459515742,
0.02713244623712171,
0.02437844237030676,
0.023231168944735835,
0.021485813934799328,
0.020067052540438033,
0.019914687157926197,
0.019722277891170578,
0.019206546195939533,
0.018880703560548287,
0.01870484535286447,
0.018512530425942385,
0.018191908482032677,
0.017557978614165026,
0.016724581301722486,
0.016408528031018617,
0.01476049062929315,
0.014398167828760735,
0.012865752836806015,
0.012852703513334634,
0.012775301003566364,
0.012248456704703382,
0.010422948134586104,
0.010105252275890885,
0.009816647194386125,
0.009312408065045156,
0.009201559008415678,
0.00871858288884559,
0.00861422415139896,
0.007443375172789133,
0.007394810215380354,
0.006839754418014736,
0.006520878916418465,
0.006442265600639185,
0.0064139941206812845,
0.005631582085473647,
0.0055274772940714706,
0.005448610752789327,
0.005243952280983136,
0.004435778996877466,
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0.0038042973912100686,
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0.002285858628867437,
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0.0013082882082572436,
0.0012830635794648653,
0.0005954067888595141,
5.329729180793031e-05
]
},
"cv_performance": {
"prediction": {
"accuracy": 61.17647058823529,
"precision": 27.71428571428571,
"recall": 31.333333333333332,
"f1": 27.77777777777778
},
"selection": {
"precision": 19.38149765850442,
"recall": 12.941176470588236,
"f1": 15.514294773659415,
"jaccard": 8.421882643728546
}
}
}