GenoTEX / output /regress /Psoriatic_Arthritis /significant_genes_condition_Obesity.json
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{
"significant_genes": {
"Variable": [
"TMEM128",
"ACOT2",
"OPTN",
"QRSL1",
"OR56B1",
"HLA-DRB6",
"CRYBB2",
"PHC2",
"DNAJC3",
"SNHG12",
"RGL4",
"KLK1",
"RBM7",
"ENOSF1",
"ZC2HC1A",
"BAG3",
"MME",
"ODAD3",
"MEG8",
"DIPK1B",
"NBPF11",
"PTPN23",
"ZNF679",
"LIG4",
"ATP5MK",
"ADAMDEC1",
"GRB14",
"CNTNAP2",
"IGF2BP3",
"CHI3L2",
"GSTT1",
"RNF144B",
"PYROXD1",
"KLHL26",
"CPEB4",
"DSP",
"CARMIL1",
"CABYR",
"NQO2",
"SNORD16",
"MIX23",
"SLC38A11",
"PPP1R3E",
"RPPH1",
"EEF1A2",
"ZNF844",
"METTL2A",
"REEP4",
"FBXW9",
"TSPYL5",
"FAM167A"
],
"Coefficient": [
0.11078054070195768,
-0.08367285639610214,
-0.08124403669226267,
-0.07469460269655398,
0.07020480544082593,
-0.06497943434638624,
0.05900828278735195,
-0.05618998765337671,
-0.055244368243474486,
0.05504758849617412,
0.0511084331112854,
0.0510560184442142,
-0.05046168966617299,
0.04823301269938246,
-0.04784720881732191,
-0.04710922728056779,
-0.04630898805252563,
-0.045995369500332055,
0.045363190713681084,
0.04361816733846638,
0.042944742731399144,
0.04244597958578745,
-0.040993979720661086,
0.03421173357573685,
-0.03417322612335343,
-0.03417225362471523,
0.033888886445668266,
0.03231361226495115,
-0.0303912531475302,
0.02671671213178681,
-0.025771333817950052,
0.024453105765110603,
-0.024368644674960326,
0.023098489793071605,
0.021833397106056338,
-0.02139645113183968,
0.021362021892910022,
-0.02111021874781473,
0.020912843603464137,
0.016711385960504206,
-0.01362969455801755,
0.011791377992579883,
-0.010138854757010034,
0.00967012885265538,
-0.008207506092455798,
-0.00582094141804116,
0.004897911449230328,
0.0032980130749153624,
-0.0028010905570624045,
-0.00139417633620047,
6.08681155629963e-05
],
"Absolute Coefficient": [
0.11078054070195768,
0.08367285639610214,
0.08124403669226267,
0.07469460269655398,
0.07020480544082593,
0.06497943434638624,
0.05900828278735195,
0.05618998765337671,
0.055244368243474486,
0.05504758849617412,
0.0511084331112854,
0.0510560184442142,
0.05046168966617299,
0.04823301269938246,
0.04784720881732191,
0.04710922728056779,
0.04630898805252563,
0.045995369500332055,
0.045363190713681084,
0.04361816733846638,
0.042944742731399144,
0.04244597958578745,
0.040993979720661086,
0.03421173357573685,
0.03417322612335343,
0.03417225362471523,
0.033888886445668266,
0.03231361226495115,
0.0303912531475302,
0.02671671213178681,
0.025771333817950052,
0.024453105765110603,
0.024368644674960326,
0.023098489793071605,
0.021833397106056338,
0.02139645113183968,
0.021362021892910022,
0.02111021874781473,
0.020912843603464137,
0.016711385960504206,
0.01362969455801755,
0.011791377992579883,
0.010138854757010034,
0.00967012885265538,
0.008207506092455798,
0.00582094141804116,
0.004897911449230328,
0.0032980130749153624,
0.0028010905570624045,
0.00139417633620047,
6.08681155629963e-05
]
},
"cv_performance": {
"prediction": {
"accuracy": 86.36363636363635,
"precision": 10.0,
"recall": 6.666666666666666,
"f1": 8.0
},
"selection": {
"precision": 0.930232558139535,
"recall": 2.0,
"f1": 1.2698412698412698,
"jaccard": 0.6557377049180328
}
}
}