GenoTEX / output /regress /Rheumatoid_Arthritis /significant_genes_condition_Crohns_Disease.json
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{
"significant_genes": {
"Variable": [
"MAP7D2",
"PER3",
"CYP1A1",
"PHRF1",
"HS3ST3A1",
"IL12RB2",
"UNC93A",
"GAREM2",
"USPL1",
"CCN6",
"EPPK1",
"RASGRP3",
"ZNF790-AS1",
"XIST",
"CD24",
"TDRD9",
"QRICH2",
"UNC5C",
"AFMID",
"SIK1",
"PSORS1C1",
"PAPPA",
"SYCP2L",
"YEATS4",
"CSTF3",
"PPP4R3A",
"LIAT1",
"RIMKLA",
"SCGB1C1",
"CXCL6",
"SGCA",
"CCDC81",
"CTBP1",
"GTF2B",
"SLC16A9",
"FAM98A",
"SLCO1B3",
"ERVW-1",
"RAB40AL",
"ZFAND5",
"DHRS1",
"HAND2-AS1",
"WDR64",
"KCNJ10",
"AADACP1",
"ALDH8A1",
"ANKRD30A",
"SOCS2",
"KRT79",
"TF",
"GCLM",
"KCNC4",
"DOC2B",
"TSPAN10",
"LIMD1-AS1",
"MEPCE",
"CDH2",
"IGLV3-10",
"FOLR3",
"TRH",
"ZNF740",
"FOXRED2",
"EXOC3-AS1",
"SF3B6",
"ADGRB3",
"IDH3G",
"SPINT3",
"ESRG",
"CYCSP19",
"TEKT4P2",
"ESPNP",
"PRKXP1",
"TTTY1",
"TTC13",
"C10orf88",
"LKAAEAR1",
"ACTR6",
"MIR4755",
"IFNE",
"MRPS11",
"THAP9-AS1",
"QRICH1",
"HGFAC",
"LRRC55",
"ATP1B1",
"MAFIP",
"MAGEC2",
"BAALC",
"AXIN2",
"SFXN2",
"TTN-AS1",
"CNGA4",
"PHAF1",
"ASB7",
"GHRLOS",
"NPAS2",
"ITPK1-AS1",
"TCIM",
"FGF13-AS1",
"CXCL1",
"GCSAML-AS1",
"BPESC1",
"HINFP",
"ZNF232",
"ZNF568",
"ZZZ3",
"CALHM3",
"DUTP1",
"CNTN6",
"CAPN6",
"TTTY1B"
],
"Coefficient": [
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0.03154280507259937,
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-0.015293417950781749,
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-0.004843403064776219,
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-0.004348537527653856,
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-0.0037592602008394596,
-0.0035805758462889945,
-0.003498545377503216,
-0.0032670928182251297,
-0.0029324603155884304,
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0.0022473502542070473,
0.002096366594158331,
-0.0020418613450553175,
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-0.0012756321620991519,
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0.0008813197963705132,
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-5.887685087814298e-05,
-3.120476859561829e-05,
-1.009293658750142e-17
],
"Absolute Coefficient": [
0.058590010487545724,
0.04518322723031675,
0.038278910710269495,
0.032559544822513393,
0.03154280507259937,
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0.010973023852705054,
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0.01023711664209799,
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0.008682672901749894,
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0.0067009994923637765,
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5.887685087814298e-05,
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1.009293658750142e-17
]
},
"cv_performance": {
"prediction": {
"accuracy": 90.76923076923077,
"precision": 76.0,
"recall": 72.28571428571429,
"f1": 73.06792058516197
},
"selection": {
"precision": 1.390736562419189,
"recall": 0.5479452054794519,
"f1": 0.7860616348374034,
"jaccard": 0.3947595124322002
}
}
}