| # Path Configuration | |
| from tools.preprocess import * | |
| # Processing context | |
| trait = "Metabolic_Rate" | |
| # Input paths | |
| tcga_root_dir = "../DATA/TCGA" | |
| # Output paths | |
| out_data_file = "./output/preprocess/3/Metabolic_Rate/TCGA.csv" | |
| out_gene_data_file = "./output/preprocess/3/Metabolic_Rate/gene_data/TCGA.csv" | |
| out_clinical_data_file = "./output/preprocess/3/Metabolic_Rate/clinical_data/TCGA.csv" | |
| json_path = "./output/preprocess/3/Metabolic_Rate/cohort_info.json" | |
| # Review the TCGA subdirectories and look for matches with Metabolic_Rate trait | |
| # No directory clearly related to metabolic rate was found | |
| # Record that this trait cannot be processed due to lack of suitable data | |
| validate_and_save_cohort_info( | |
| is_final=False, | |
| cohort="TCGA", | |
| info_path=json_path, | |
| is_gene_available=True, # TCGA has gene expression data | |
| is_trait_available=False # No suitable trait data found | |
| ) |