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- .gitattributes +26 -0
- output/preprocess/Obesity/TCGA.csv +3 -0
- output/preprocess/Obesity/gene_data/TCGA.csv +3 -0
- output/preprocess/Ocular_Melanomas/gene_data/TCGA.csv +3 -0
- output/preprocess/Osteoarthritis/GSE142049.csv +3 -0
- output/preprocess/Osteoarthritis/GSE56409.csv +3 -0
- output/preprocess/Osteoarthritis/GSE93698.csv +0 -0
- output/preprocess/Osteoarthritis/clinical_data/GSE56409.csv +2 -0
- output/preprocess/Osteoarthritis/clinical_data/GSE75181.csv +4 -0
- output/preprocess/Osteoarthritis/clinical_data/GSE93698.csv +4 -0
- output/preprocess/Osteoarthritis/clinical_data/GSE93720.csv +2 -0
- output/preprocess/Osteoarthritis/clinical_data/GSE98460.csv +16 -0
- output/preprocess/Osteoarthritis/gene_data/GSE107105.csv +0 -0
- output/preprocess/Osteoarthritis/gene_data/GSE141934.csv +0 -0
- output/preprocess/Osteoarthritis/gene_data/GSE142049.csv +3 -0
- output/preprocess/Osteoarthritis/gene_data/GSE236924.csv +3 -0
- output/preprocess/Osteoarthritis/gene_data/GSE55457.csv +0 -0
- output/preprocess/Osteoarthritis/gene_data/GSE56409.csv +3 -0
- output/preprocess/Osteoarthritis/gene_data/GSE75181.csv +3 -0
- output/preprocess/Osteoarthritis/gene_data/GSE93698.csv +0 -0
- output/preprocess/Osteoarthritis/gene_data/GSE93720.csv +3 -0
- output/preprocess/Osteoarthritis/gene_data/GSE98460.csv +3 -0
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1 |
+
,GSM1246535,GSM1246536,GSM1246537,GSM1246538,GSM1246539,GSM1246540,GSM1246541,GSM1246542,GSM1246543,GSM1246544,GSM1246545,GSM1246546,GSM1246547,GSM1246548,GSM1246549,GSM1246550,GSM1246551,GSM1246552,GSM1246553,GSM1246554,GSM1246555,GSM1246556,GSM1246557,GSM1246558,GSM1246559,GSM1246560,GSM1246561,GSM1246562,GSM1246563,GSM1246564
|
2 |
+
Osteoporosis,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
|
3 |
+
Age,11.24,14.15,14.03,19.16,16.66,18.26,17.59,12.51,13.53,12.06,15.08,14.46,20.18,21.95,27.34,11.24,14.15,14.03,19.16,16.66,18.26,17.59,12.51,13.53,12.06,15.08,14.46,20.18,21.95,27.34
|
4 |
+
Gender,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
|
output/preprocess/Osteoporosis/clinical_data/GSE56814.csv
ADDED
@@ -0,0 +1,74 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
,Osteoporosis,Gender
|
2 |
+
GSM1369683,,0
|
3 |
+
GSM1369684,,0
|
4 |
+
GSM1369685,,0
|
5 |
+
GSM1369686,,0
|
6 |
+
GSM1369687,,0
|
7 |
+
GSM1369688,,0
|
8 |
+
GSM1369689,,0
|
9 |
+
GSM1369690,,0
|
10 |
+
GSM1369691,,0
|
11 |
+
GSM1369692,,0
|
12 |
+
GSM1369693,,0
|
13 |
+
GSM1369694,,0
|
14 |
+
GSM1369695,,0
|
15 |
+
GSM1369696,,0
|
16 |
+
GSM1369697,,0
|
17 |
+
GSM1369698,,0
|
18 |
+
GSM1369699,,0
|
19 |
+
GSM1369700,,0
|
20 |
+
GSM1369701,,0
|
21 |
+
GSM1369702,,0
|
22 |
+
GSM1369703,,0
|
23 |
+
GSM1369704,,0
|
24 |
+
GSM1369705,,0
|
25 |
+
GSM1369706,,0
|
26 |
+
GSM1369707,,0
|
27 |
+
GSM1369708,,0
|
28 |
+
GSM1369709,,0
|
29 |
+
GSM1369710,,0
|
30 |
+
GSM1369711,,0
|
31 |
+
GSM1369712,,0
|
32 |
+
GSM1369713,,0
|
33 |
+
GSM1369714,,0
|
34 |
+
GSM1369715,,0
|
35 |
+
GSM1369716,,0
|
36 |
+
GSM1369717,,0
|
37 |
+
GSM1369718,,0
|
38 |
+
GSM1369719,,0
|
39 |
+
GSM1369720,,0
|
40 |
+
GSM1369721,,0
|
41 |
+
GSM1369722,,0
|
42 |
+
GSM1369723,,0
|
43 |
+
GSM1369724,,0
|
44 |
+
GSM1369725,,0
|
45 |
+
GSM1369726,,0
|
46 |
+
GSM1369727,,0
|
47 |
+
GSM1369728,,0
|
48 |
+
GSM1369729,,0
|
49 |
+
GSM1369730,,0
|
50 |
+
GSM1369731,,0
|
51 |
+
GSM1369732,,0
|
52 |
+
GSM1369733,,0
|
53 |
+
GSM1369734,,0
|
54 |
+
GSM1369735,,0
|
55 |
+
GSM1369736,,0
|
56 |
+
GSM1369737,,0
|
57 |
+
GSM1369738,,0
|
58 |
+
GSM1369739,,0
|
59 |
+
GSM1369740,,0
|
60 |
+
GSM1369741,,0
|
61 |
+
GSM1369742,,0
|
62 |
+
GSM1369743,,0
|
63 |
+
GSM1369744,,0
|
64 |
+
GSM1369745,,0
|
65 |
+
GSM1369746,,0
|
66 |
+
GSM1369747,,0
|
67 |
+
GSM1369748,,0
|
68 |
+
GSM1369749,,0
|
69 |
+
GSM1369750,,0
|
70 |
+
GSM1369751,,0
|
71 |
+
GSM1369752,,0
|
72 |
+
GSM1369753,,0
|
73 |
+
GSM1369754,,0
|
74 |
+
GSM1369755,,0
|
output/preprocess/Osteoporosis/clinical_data/GSE56815.csv
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
,GSM1369756,GSM1369757,GSM1369758,GSM1369759,GSM1369760,GSM1369761,GSM1369762,GSM1369763,GSM1369764,GSM1369765,GSM1369766,GSM1369767,GSM1369768,GSM1369769,GSM1369770,GSM1369771,GSM1369772,GSM1369773,GSM1369774,GSM1369775,GSM1369776,GSM1369777,GSM1369778,GSM1369779,GSM1369780,GSM1369781,GSM1369782,GSM1369783,GSM1369784,GSM1369785,GSM1369786,GSM1369787,GSM1369788,GSM1369789,GSM1369790,GSM1369791,GSM1369792,GSM1369793,GSM1369794,GSM1369795,GSM1369796,GSM1369797,GSM1369798,GSM1369799,GSM1369800,GSM1369801,GSM1369802,GSM1369803,GSM1369804,GSM1369805,GSM1369806,GSM1369807,GSM1369808,GSM1369809,GSM1369810,GSM1369811,GSM1369812,GSM1369813,GSM1369814,GSM1369815,GSM1369816,GSM1369817,GSM1369818,GSM1369819,GSM1369820,GSM1369821,GSM1369822,GSM1369823,GSM1369824,GSM1369825,GSM1369826,GSM1369827,GSM1369828,GSM1369829,GSM1369830,GSM1369831,GSM1369832,GSM1369833,GSM1369834,GSM1369835
|
2 |
+
Osteoporosis,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
3 |
+
Age,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
|
output/preprocess/Osteoporosis/clinical_data/GSE62589.csv
ADDED
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
,Gender
|
2 |
+
GSM1526572,0.0
|
3 |
+
GSM1526573,0.0
|
4 |
+
GSM1526574,0.0
|
5 |
+
GSM1526575,0.0
|
6 |
+
GSM1526576,0.0
|
7 |
+
GSM1526577,0.0
|
8 |
+
GSM1526578,0.0
|
9 |
+
GSM1526579,0.0
|
10 |
+
GSM1526580,0.0
|
11 |
+
GSM1526581,0.0
|
output/preprocess/Osteoporosis/clinical_data/GSE84500.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
,GSM2238538,GSM2238539,GSM2238540,GSM2238541,GSM2238542,GSM2238543,GSM2238544,GSM2238545,GSM2238546,GSM2238547,GSM2238548,GSM2238549,GSM2238550,GSM2238551,GSM2238552,GSM2238553,GSM2238554,GSM2238555,GSM2238556,GSM2238557,GSM2238558,GSM2238559,GSM2238560,GSM2238561,GSM2238562,GSM2238563,GSM2238564,GSM2238565,GSM2238566,GSM2238567,GSM2238568,GSM2238569,GSM2238570,GSM2238571,GSM2238572,GSM2238573,GSM2238574,GSM2238575,GSM2238576,GSM2238577,GSM2238578,GSM2238579,GSM2238580,GSM2238581,GSM2238582,GSM2238583,GSM2238584,GSM2238585,GSM2238586,GSM2238587,GSM2238588,GSM2238589,GSM2238590,GSM2238591
|
2 |
+
Osteoporosis,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0
|
output/preprocess/Osteoporosis/cohort_info.json
ADDED
@@ -0,0 +1,112 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"GSE84500": {
|
3 |
+
"is_usable": true,
|
4 |
+
"is_gene_available": true,
|
5 |
+
"is_trait_available": true,
|
6 |
+
"is_available": true,
|
7 |
+
"is_biased": false,
|
8 |
+
"has_age": false,
|
9 |
+
"has_gender": false,
|
10 |
+
"sample_size": 54
|
11 |
+
},
|
12 |
+
"GSE80614": {
|
13 |
+
"is_usable": false,
|
14 |
+
"is_gene_available": true,
|
15 |
+
"is_trait_available": false,
|
16 |
+
"is_available": false,
|
17 |
+
"is_biased": null,
|
18 |
+
"has_age": null,
|
19 |
+
"has_gender": null,
|
20 |
+
"sample_size": null
|
21 |
+
},
|
22 |
+
"GSE62589": {
|
23 |
+
"is_usable": false,
|
24 |
+
"is_gene_available": true,
|
25 |
+
"is_trait_available": false,
|
26 |
+
"is_available": false,
|
27 |
+
"is_biased": null,
|
28 |
+
"has_age": null,
|
29 |
+
"has_gender": null,
|
30 |
+
"sample_size": null
|
31 |
+
},
|
32 |
+
"GSE56815": {
|
33 |
+
"is_usable": true,
|
34 |
+
"is_gene_available": true,
|
35 |
+
"is_trait_available": true,
|
36 |
+
"is_available": true,
|
37 |
+
"is_biased": false,
|
38 |
+
"has_age": true,
|
39 |
+
"has_gender": false,
|
40 |
+
"sample_size": 80
|
41 |
+
},
|
42 |
+
"GSE56814": {
|
43 |
+
"is_usable": false,
|
44 |
+
"is_gene_available": false,
|
45 |
+
"is_trait_available": false,
|
46 |
+
"is_available": false,
|
47 |
+
"is_biased": null,
|
48 |
+
"has_age": null,
|
49 |
+
"has_gender": null,
|
50 |
+
"sample_size": null
|
51 |
+
},
|
52 |
+
"GSE51495": {
|
53 |
+
"is_usable": true,
|
54 |
+
"is_gene_available": true,
|
55 |
+
"is_trait_available": true,
|
56 |
+
"is_available": true,
|
57 |
+
"is_biased": false,
|
58 |
+
"has_age": true,
|
59 |
+
"has_gender": false,
|
60 |
+
"sample_size": 30
|
61 |
+
},
|
62 |
+
"GSE35925": {
|
63 |
+
"is_usable": false,
|
64 |
+
"is_gene_available": true,
|
65 |
+
"is_trait_available": false,
|
66 |
+
"is_available": false,
|
67 |
+
"is_biased": null,
|
68 |
+
"has_age": null,
|
69 |
+
"has_gender": null,
|
70 |
+
"sample_size": null
|
71 |
+
},
|
72 |
+
"GSE224330": {
|
73 |
+
"is_usable": true,
|
74 |
+
"is_gene_available": true,
|
75 |
+
"is_trait_available": true,
|
76 |
+
"is_available": true,
|
77 |
+
"is_biased": false,
|
78 |
+
"has_age": true,
|
79 |
+
"has_gender": true,
|
80 |
+
"sample_size": 21
|
81 |
+
},
|
82 |
+
"GSE20881": {
|
83 |
+
"is_usable": false,
|
84 |
+
"is_gene_available": true,
|
85 |
+
"is_trait_available": false,
|
86 |
+
"is_available": false,
|
87 |
+
"is_biased": null,
|
88 |
+
"has_age": null,
|
89 |
+
"has_gender": null,
|
90 |
+
"sample_size": null
|
91 |
+
},
|
92 |
+
"GSE152073": {
|
93 |
+
"is_usable": false,
|
94 |
+
"is_gene_available": true,
|
95 |
+
"is_trait_available": false,
|
96 |
+
"is_available": false,
|
97 |
+
"is_biased": null,
|
98 |
+
"has_age": null,
|
99 |
+
"has_gender": null,
|
100 |
+
"sample_size": null
|
101 |
+
},
|
102 |
+
"TCGA": {
|
103 |
+
"is_usable": false,
|
104 |
+
"is_gene_available": false,
|
105 |
+
"is_trait_available": false,
|
106 |
+
"is_available": false,
|
107 |
+
"is_biased": null,
|
108 |
+
"has_age": null,
|
109 |
+
"has_gender": null,
|
110 |
+
"sample_size": null
|
111 |
+
}
|
112 |
+
}
|
output/preprocess/Osteoporosis/gene_data/GSE152073.csv
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:84d2d64d57dc9d7fd725b42679d0ff97d0970b9b63e0f31c1539060351c19fe0
|
3 |
+
size 19197364
|
output/preprocess/Osteoporosis/gene_data/GSE224330.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
output/preprocess/Osteoporosis/gene_data/GSE35925.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
output/preprocess/Osteoporosis/gene_data/GSE51495.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
output/preprocess/Osteoporosis/gene_data/GSE56814.csv
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:43687c980c6db81762f1cf03f5268d4989596a03919647bde0e49b4aaee05951
|
3 |
+
size 19578664
|
output/preprocess/Osteoporosis/gene_data/GSE56815.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
output/preprocess/Osteoporosis/gene_data/GSE62589.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
output/preprocess/Osteoporosis/gene_data/GSE80614.csv
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
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output/preprocess/Ovarian_Cancer/clinical_data/GSE103737.csv
ADDED
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Age,70.0,49.0,87.0,65.0,63.0,50.0,71.0,62.0,51.0,68.0,48.0,61.0,79.0,48.0,63.0,61.0,73.0,71.0,62.0,76.0,59.0,69.0,39.0,65.0,56.0,49.0,47.0,53.0,58.0,77.0,80.0,40.0,65.0,56.0,41.0,50.0,44.0,60.0,64.0,47.0,33.0,75.0,48.0,45.0,79.0,37.0,50.0,41.0,61.0,50.0,63.0,64.0,62.0,61.0,72.0,49.0,84.0,84.0,55.0,71.0,51.0,46.0,61.0,56.0,70.0,66.0,82.0,55.0,66.0,29.0,62.0,52.0,76.0,78.0,65.0,50.0,52.0,53.0,70.0,68.0,71.0,60.0,63.0,76.0,41.0,76.0,53.0,47.0,51.0,51.0,29.0,66.0,56.0,56.0,53.0,51.0,42.0
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output/preprocess/Ovarian_Cancer/clinical_data/GSE126132.csv
ADDED
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Ovarian_Cancer,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0
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output/preprocess/Ovarian_Cancer/clinical_data/GSE126133.csv
ADDED
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Cell_Type,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0
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output/preprocess/Ovarian_Cancer/clinical_data/GSE126308.csv
ADDED
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output/preprocess/Ovarian_Cancer/clinical_data/GSE130402.csv
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