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- .gitattributes +27 -0
- output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/TCGA.csv +3 -0
- output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/TCGA.csv +3 -0
- output/preprocess/Chronic_obstructive_pulmonary_disease_(COPD)/gene_data/TCGA_original.csv +3 -0
- output/preprocess/Kidney_Clear_Cell_Carcinoma/gene_data/TCGA.csv +3 -0
- output/preprocess/Kidney_stones/TCGA.csv +3 -0
- output/preprocess/Kidney_stones/gene_data/TCGA.csv +3 -0
- output/preprocess/Kidney_stones/gene_data/TCGA_original.csv +3 -0
- output/preprocess/LDL_Cholesterol_Levels/TCGA.csv +3 -0
- output/preprocess/LDL_Cholesterol_Levels/gene_data/TCGA.csv +3 -0
- output/preprocess/Lactose_Intolerance/gene_data/TCGA.csv +3 -0
- output/preprocess/Liver_Cancer/TCGA.csv +3 -0
- output/preprocess/Liver_Cancer/gene_data/TCGA.csv +3 -0
- output/preprocess/Longevity/GSE16717.csv +3 -0
- output/preprocess/Longevity/GSE48264.csv +3 -0
- output/preprocess/Longevity/clinical_data/GSE48264.csv +2 -0
- output/preprocess/Longevity/clinical_data/TCGA.csv +1248 -0
- output/preprocess/Longevity/gene_data/GSE16717.csv +3 -0
- output/preprocess/Longevity/gene_data/GSE44147.csv +1 -0
- output/preprocess/Longevity/gene_data/GSE48264.csv +3 -0
- output/preprocess/Lower_Grade_Glioma/GSE107850.csv +3 -0
- output/preprocess/Lower_Grade_Glioma/GSE35158.csv +3 -0
- output/preprocess/Lower_Grade_Glioma/GSE74567.csv +0 -0
- output/preprocess/Lower_Grade_Glioma/clinical_data/GSE107850.csv +4 -0
- output/preprocess/Lower_Grade_Glioma/clinical_data/GSE24072.csv +4 -0
- output/preprocess/Lower_Grade_Glioma/clinical_data/GSE35158.csv +2 -0
- output/preprocess/Lower_Grade_Glioma/clinical_data/GSE74567.csv +2 -0
- output/preprocess/Lower_Grade_Glioma/clinical_data/TCGA.csv +531 -0
- output/preprocess/Lower_Grade_Glioma/cohort_info.json +52 -0
- output/preprocess/Lower_Grade_Glioma/gene_data/GSE107850.csv +3 -0
- output/preprocess/Lower_Grade_Glioma/gene_data/GSE24072.csv +0 -0
- output/preprocess/Lower_Grade_Glioma/gene_data/GSE35158.csv +3 -0
- output/preprocess/Lower_Grade_Glioma/gene_data/GSE74567.csv +0 -0
- output/preprocess/Lung_Cancer/GSE21359.csv +3 -0
- output/preprocess/Lung_Cancer/GSE244117.csv +0 -0
- output/preprocess/Lung_Cancer/GSE244123.csv +0 -0
- output/preprocess/Lung_Cancer/GSE244645.csv +3 -0
- output/preprocess/Lung_Cancer/GSE248830.csv +0 -0
- output/preprocess/Lung_Cancer/GSE280643.csv +0 -0
- output/preprocess/Lung_Cancer/clinical_data/GSE21359.csv +4 -0
- output/preprocess/Lung_Cancer/clinical_data/GSE244117.csv +4 -0
- output/preprocess/Lung_Cancer/clinical_data/GSE244123.csv +4 -0
- output/preprocess/Lung_Cancer/clinical_data/GSE244645.csv +4 -0
- output/preprocess/Lung_Cancer/clinical_data/GSE244647.csv +4 -0
- output/preprocess/Lung_Cancer/clinical_data/GSE248830.csv +4 -0
- output/preprocess/Lung_Cancer/clinical_data/GSE249262.csv +2 -0
- output/preprocess/Lung_Cancer/clinical_data/GSE280643.csv +2 -0
- output/preprocess/Lung_Cancer/clinical_data/TCGA.csv +1130 -0
- output/preprocess/Lung_Cancer/cohort_info.json +102 -0
- output/preprocess/Lung_Cancer/gene_data/GSE21359.csv +3 -0
.gitattributes
CHANGED
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|
1 |
+
sampleID,Longevity,Age,Gender
|
2 |
+
TCGA-3C-AAAU-01,1,55.0,0.0
|
3 |
+
TCGA-3C-AALI-01,1,50.0,0.0
|
4 |
+
TCGA-3C-AALJ-01,1,62.0,0.0
|
5 |
+
TCGA-3C-AALK-01,1,52.0,0.0
|
6 |
+
TCGA-4H-AAAK-01,1,50.0,0.0
|
7 |
+
TCGA-5L-AAT0-01,1,42.0,0.0
|
8 |
+
TCGA-5L-AAT1-01,1,63.0,0.0
|
9 |
+
TCGA-5T-A9QA-01,1,52.0,0.0
|
10 |
+
TCGA-A1-A0SB-01,1,70.0,0.0
|
11 |
+
TCGA-A1-A0SD-01,1,59.0,0.0
|
12 |
+
TCGA-A1-A0SE-01,1,56.0,0.0
|
13 |
+
TCGA-A1-A0SF-01,1,54.0,0.0
|
14 |
+
TCGA-A1-A0SG-01,1,61.0,0.0
|
15 |
+
TCGA-A1-A0SH-01,1,39.0,0.0
|
16 |
+
TCGA-A1-A0SI-01,1,52.0,0.0
|
17 |
+
TCGA-A1-A0SJ-01,1,39.0,0.0
|
18 |
+
TCGA-A1-A0SK-01,1,54.0,0.0
|
19 |
+
TCGA-A1-A0SM-01,1,77.0,1.0
|
20 |
+
TCGA-A1-A0SN-01,1,50.0,0.0
|
21 |
+
TCGA-A1-A0SO-01,1,67.0,0.0
|
22 |
+
TCGA-A1-A0SP-01,1,40.0,0.0
|
23 |
+
TCGA-A1-A0SQ-01,1,45.0,0.0
|
24 |
+
TCGA-A2-A04N-01,1,66.0,0.0
|
25 |
+
TCGA-A2-A04P-01,1,36.0,0.0
|
26 |
+
TCGA-A2-A04Q-01,1,48.0,0.0
|
27 |
+
TCGA-A2-A04R-01,1,36.0,0.0
|
28 |
+
TCGA-A2-A04T-01,1,62.0,0.0
|
29 |
+
TCGA-A2-A04U-01,1,47.0,0.0
|
30 |
+
TCGA-A2-A04V-01,1,39.0,0.0
|
31 |
+
TCGA-A2-A04W-01,1,50.0,0.0
|
32 |
+
TCGA-A2-A04X-01,1,34.0,0.0
|
33 |
+
TCGA-A2-A04Y-01,1,53.0,0.0
|
34 |
+
TCGA-A2-A0CK-01,1,60.0,0.0
|
35 |
+
TCGA-A2-A0CL-01,1,37.0,0.0
|
36 |
+
TCGA-A2-A0CM-01,1,40.0,0.0
|
37 |
+
TCGA-A2-A0CO-01,1,85.0,0.0
|
38 |
+
TCGA-A2-A0CP-01,1,60.0,0.0
|
39 |
+
TCGA-A2-A0CQ-01,1,62.0,0.0
|
40 |
+
TCGA-A2-A0CR-01,1,54.0,0.0
|
41 |
+
TCGA-A2-A0CS-01,1,73.0,0.0
|
42 |
+
TCGA-A2-A0CT-01,1,71.0,0.0
|
43 |
+
TCGA-A2-A0CU-01,1,73.0,0.0
|
44 |
+
TCGA-A2-A0CV-01,1,41.0,0.0
|
45 |
+
TCGA-A2-A0CW-01,1,67.0,0.0
|
46 |
+
TCGA-A2-A0CX-01,1,52.0,0.0
|
47 |
+
TCGA-A2-A0CY-01,1,63.0,0.0
|
48 |
+
TCGA-A2-A0CZ-01,1,46.0,0.0
|
49 |
+
TCGA-A2-A0D0-01,1,60.0,0.0
|
50 |
+
TCGA-A2-A0D1-01,1,76.0,0.0
|
51 |
+
TCGA-A2-A0D2-01,1,45.0,0.0
|
52 |
+
TCGA-A2-A0D3-01,1,42.0,0.0
|
53 |
+
TCGA-A2-A0D4-01,1,37.0,0.0
|
54 |
+
TCGA-A2-A0EM-01,1,73.0,0.0
|
55 |
+
TCGA-A2-A0EN-01,1,70.0,0.0
|
56 |
+
TCGA-A2-A0EO-01,1,54.0,0.0
|
57 |
+
TCGA-A2-A0EP-01,1,56.0,0.0
|
58 |
+
TCGA-A2-A0EQ-01,1,64.0,0.0
|
59 |
+
TCGA-A2-A0ER-01,1,63.0,0.0
|
60 |
+
TCGA-A2-A0ES-01,1,52.0,0.0
|
61 |
+
TCGA-A2-A0ET-01,1,58.0,0.0
|
62 |
+
TCGA-A2-A0EU-01,1,79.0,0.0
|
63 |
+
TCGA-A2-A0EV-01,1,80.0,0.0
|
64 |
+
TCGA-A2-A0EW-01,1,53.0,0.0
|
65 |
+
TCGA-A2-A0EX-01,1,46.0,0.0
|
66 |
+
TCGA-A2-A0EY-01,1,62.0,0.0
|
67 |
+
TCGA-A2-A0ST-01,1,62.0,0.0
|
68 |
+
TCGA-A2-A0SU-01,1,66.0,0.0
|
69 |
+
TCGA-A2-A0SV-01,1,63.0,0.0
|
70 |
+
TCGA-A2-A0SW-01,1,82.0,0.0
|
71 |
+
TCGA-A2-A0SX-01,1,48.0,0.0
|
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output/preprocess/Longevity/gene_data/GSE16717.csv
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2 |
+
Lower_Grade_Glioma,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
3 |
+
Age,46.8966,28.1944,51.2608,26.5325,27.7317,22.3025,63.4825,52.5722,39.4853,20.9555,59.2361,63.833,34.371,50.2231,36.4052,46.3737,52.961,31.989,49.4018,38.1629,53.2539,54.2834,43.2471,63.7125,37.306,32.8706,58.3217,41.8289,37.9493,42.6229,52.8241,71.2279,33.7002,34.6119,47.7016,63.1951,27.1923,62.9213,36.2628,39.217,35.5154,49.2402,37.4209,62.6393,57.1088,25.7906,52.961,28.2491,31.8658,39.2745,28.6626,26.9678,44.6927,36.8679,37.6263,33.9603,41.191,41.796,21.9329,50.6448,36.2656,48.2081,50.7926,46.59,42.5708,53.1389,51.6277,40.0931,32.104,50.1383,37.1663,19.4771,53.3689,30.527,40.8049,69.4237,26.0643,38.3354,51.4962,58.7324,47.1732,21.8836,43.8084,41.6263,49.6646,41.1307,43.6057,27.4689,53.5688,42.4695,31.8932,30.5243,22.3272,48.742,47.0144,55.1513,40.2546,49.1061,47.0253,43.9863,46.4148,31.5099,58.8255,53.6537,47.7016,28.386,58.36,47.2936,63.5127,36.0767,33.588,43.1841,42.9131,63.8385,32.9473,51.1348,46.1739,45.2156,45.7851,50.4832,58.3354,28.0274,35.5647,37.4045,33.191,31.6386,48.23,61.8289,42.3847,30.9706,57.1034,39.3539,53.2074,62.987,44.9911,54.026,40.742,37.4045,58.1081,42.4969,36.7474,50.4695,59.2225,45.5359,49.1663,53.4894,33.4456,40.6379,48.5366,26.0315,47.2526,34.9459,32.7474,31.9562,50.4559,61.1198,66.8665,50.3737,39.0089,33.4894,40.7885,35.4661,50.5544,56.104,47.2416,63.5264,54.6557,36.5092,40.4654,60.2081,46.3107,42.8255,48.7392,45.5469,41.2731,45.8563,28.9528,55.6769,31.9014,40.2409,37.024,64.8022,42.2806,52.115,59.0144,37.8946,46.6557,30.6639,40.6242,39.6824,29.2868,49.4045,53.3662,50.883,39.6112
|
4 |
+
Gender,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0
|
output/preprocess/Lower_Grade_Glioma/clinical_data/GSE24072.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21
|
2 |
+
,,,,,,,,,,,,,,,,,,,,,
|
3 |
+
72.0,70.0,34.0,54.0,68.0,30.0,60.0,73.0,52.0,65.0,76.0,51.0,43.0,67.0,66.0,69.0,74.0,36.0,38.0,63.0,46.0,55.0
|
4 |
+
1.0,0.0,,,,,,,,,,,,,,,,,,,,
|
output/preprocess/Lower_Grade_Glioma/clinical_data/GSE35158.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
,GSM864095,GSM864096,GSM864097,GSM864098,GSM864099,GSM864100,GSM864101,GSM864102,GSM864103,GSM864104,GSM864105,GSM864106,GSM864107,GSM864108,GSM864109,GSM864110,GSM864111,GSM864112,GSM864113,GSM864114,GSM864115,GSM864116,GSM864117,GSM864118,GSM864119,GSM864120,GSM864121,GSM864122,GSM864123,GSM864124,GSM864125,GSM864126,GSM864127,GSM864128,GSM864129,GSM864130,GSM864131,GSM864132,GSM864133,GSM864134,GSM864135,GSM864136,GSM864137,GSM864138,GSM864139,GSM864140,GSM864141,GSM864142,GSM864143,GSM864144,GSM864145,GSM864146,GSM864147,GSM864148,GSM864149,GSM864150,GSM864151,GSM864152,GSM864153,GSM864154,GSM864155,GSM864156,GSM864157,GSM864158,GSM864159,GSM864160,GSM864161,GSM864162,GSM864163,GSM864164,GSM864165,GSM864166,GSM864167,GSM864168,GSM864169,GSM864170,GSM864171,GSM864172,GSM864173,GSM864174,GSM864175
|
2 |
+
Lower_Grade_Glioma,,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0
|
output/preprocess/Lower_Grade_Glioma/clinical_data/GSE74567.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
,GSM1923085,GSM1923086,GSM1923087,GSM1923088,GSM1923089,GSM1923090,GSM1923091,GSM1923092,GSM1923093,GSM1923094,GSM1923095,GSM1923096,GSM1923097,GSM1923098,GSM1923099,GSM1923100,GSM1923101,GSM1923102,GSM1923103,GSM1923104,GSM1923105,GSM1923106,GSM1923107,GSM1923108,GSM1923109,GSM1923110,GSM1923111,GSM1923112,GSM1923113,GSM1923114,GSM1923115,GSM1923116,GSM1923117,GSM1923118,GSM1923119,GSM1923120,GSM1923121,GSM1923122,GSM1923123,GSM1923124
|
2 |
+
Lower_Grade_Glioma,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0
|
output/preprocess/Lower_Grade_Glioma/clinical_data/TCGA.csv
ADDED
@@ -0,0 +1,531 @@
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|
1 |
+
sampleID,Lower_Grade_Glioma,Age,Gender
|
2 |
+
TCGA-CS-4938-01,1,31.0,0.0
|
3 |
+
TCGA-CS-4941-01,1,67.0,1.0
|
4 |
+
TCGA-CS-4942-01,1,44.0,0.0
|
5 |
+
TCGA-CS-4943-01,1,37.0,1.0
|
6 |
+
TCGA-CS-4944-01,1,50.0,1.0
|
7 |
+
TCGA-CS-5390-01,1,47.0,0.0
|
8 |
+
TCGA-CS-5393-01,1,39.0,1.0
|
9 |
+
TCGA-CS-5394-01,1,40.0,1.0
|
10 |
+
TCGA-CS-5395-01,1,43.0,1.0
|
11 |
+
TCGA-CS-5396-01,1,53.0,0.0
|
12 |
+
TCGA-CS-5397-01,1,54.0,0.0
|
13 |
+
TCGA-CS-6186-01,1,58.0,1.0
|
14 |
+
TCGA-CS-6188-01,1,48.0,1.0
|
15 |
+
TCGA-CS-6290-01,1,31.0,1.0
|
16 |
+
TCGA-CS-6665-01,1,51.0,0.0
|
17 |
+
TCGA-CS-6666-01,1,22.0,1.0
|
18 |
+
TCGA-CS-6667-01,1,39.0,0.0
|
19 |
+
TCGA-CS-6668-01,1,57.0,0.0
|
20 |
+
TCGA-CS-6669-01,1,26.0,0.0
|
21 |
+
TCGA-CS-6670-01,1,43.0,1.0
|
22 |
+
TCGA-DB-5270-01,1,38.0,0.0
|
23 |
+
TCGA-DB-5273-01,1,33.0,1.0
|
24 |
+
TCGA-DB-5274-01,1,37.0,0.0
|
25 |
+
TCGA-DB-5275-01,1,36.0,1.0
|
26 |
+
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output/preprocess/Lower_Grade_Glioma/cohort_info.json
ADDED
@@ -0,0 +1,52 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"GSE74567": {
|
3 |
+
"is_usable": true,
|
4 |
+
"is_gene_available": true,
|
5 |
+
"is_trait_available": true,
|
6 |
+
"is_available": true,
|
7 |
+
"is_biased": false,
|
8 |
+
"has_age": false,
|
9 |
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"has_gender": false,
|
10 |
+
"sample_size": 40
|
11 |
+
},
|
12 |
+
"GSE35158": {
|
13 |
+
"is_usable": true,
|
14 |
+
"is_gene_available": true,
|
15 |
+
"is_trait_available": true,
|
16 |
+
"is_available": true,
|
17 |
+
"is_biased": false,
|
18 |
+
"has_age": false,
|
19 |
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"has_gender": false,
|
20 |
+
"sample_size": 80
|
21 |
+
},
|
22 |
+
"GSE24072": {
|
23 |
+
"is_usable": false,
|
24 |
+
"is_gene_available": false,
|
25 |
+
"is_trait_available": false,
|
26 |
+
"is_available": false,
|
27 |
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"is_biased": null,
|
28 |
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"has_age": null,
|
29 |
+
"has_gender": null,
|
30 |
+
"sample_size": null
|
31 |
+
},
|
32 |
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"GSE107850": {
|
33 |
+
"is_usable": true,
|
34 |
+
"is_gene_available": true,
|
35 |
+
"is_trait_available": true,
|
36 |
+
"is_available": true,
|
37 |
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"is_biased": false,
|
38 |
+
"has_age": true,
|
39 |
+
"has_gender": true,
|
40 |
+
"sample_size": 195
|
41 |
+
},
|
42 |
+
"TCGA": {
|
43 |
+
"is_usable": false,
|
44 |
+
"is_gene_available": true,
|
45 |
+
"is_trait_available": true,
|
46 |
+
"is_available": true,
|
47 |
+
"is_biased": true,
|
48 |
+
"has_age": true,
|
49 |
+
"has_gender": true,
|
50 |
+
"sample_size": 530
|
51 |
+
}
|
52 |
+
}
|
output/preprocess/Lower_Grade_Glioma/gene_data/GSE107850.csv
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:8cfc4c9142d4576bda39c238fd7300590dcdb3a81d4dc746610a06c4c8c0fcae
|
3 |
+
size 47672138
|
output/preprocess/Lower_Grade_Glioma/gene_data/GSE24072.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
output/preprocess/Lower_Grade_Glioma/gene_data/GSE35158.csv
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:31a56ec47b70442242e56b75ae792ea031c6450fbee615649d0a1b1550930085
|
3 |
+
size 12648522
|
output/preprocess/Lower_Grade_Glioma/gene_data/GSE74567.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
output/preprocess/Lung_Cancer/GSE21359.csv
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:f6a1da4ea90e63fe6b89a2ed26918389f2b33bbd520be6e7204f998cf0560fc2
|
3 |
+
size 27474904
|
output/preprocess/Lung_Cancer/GSE244117.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
output/preprocess/Lung_Cancer/GSE244123.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
output/preprocess/Lung_Cancer/GSE244645.csv
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:d781fa459e00808dfdf31d26040a57390d9eb703d2df246a93834217c88381e8
|
3 |
+
size 22875995
|
output/preprocess/Lung_Cancer/GSE248830.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
output/preprocess/Lung_Cancer/GSE280643.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
output/preprocess/Lung_Cancer/clinical_data/GSE21359.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
,GSM101095,GSM101096,GSM101097,GSM101098,GSM101100,GSM101101,GSM101102,GSM101103,GSM101104,GSM101105,GSM101106,GSM101107,GSM101111,GSM101113,GSM101114,GSM101115,GSM101116,GSM114089,GSM114090,GSM190149,GSM190150,GSM190151,GSM190152,GSM190153,GSM190154,GSM190155,GSM190156,GSM252828,GSM252829,GSM252830,GSM252831,GSM252833,GSM252835,GSM252836,GSM252837,GSM252838,GSM252839,GSM252841,GSM252871,GSM252876,GSM252879,GSM252880,GSM252881,GSM252882,GSM252884,GSM252885,GSM254149,GSM254150,GSM254151,GSM254152,GSM254157,GSM254158,GSM254159,GSM254160,GSM254161,GSM254163,GSM254169,GSM254172,GSM254173,GSM254174,GSM254175,GSM254176,GSM298219,GSM298220,GSM298221,GSM298222,GSM298223,GSM298224,GSM298225,GSM298226,GSM298227,GSM298228,GSM298229,GSM298230,GSM298231,GSM298232,GSM298233,GSM298234,GSM298235,GSM298236,GSM298237,GSM298238,GSM298239,GSM298240,GSM298241,GSM298242,GSM298243,GSM298244,GSM298245,GSM298246,GSM298247,GSM300859,GSM302396,GSM302397,GSM302399,GSM350871,GSM350873,GSM350874,GSM350955,GSM350956,GSM350957,GSM350958,GSM364037,GSM364038,GSM364041,GSM364045,GSM364046,GSM364048,GSM410161,GSM410162,GSM410163,GSM410164,GSM410165,GSM434049,GSM434050,GSM434051,GSM434052,GSM434053,GSM434054,GSM434055,GSM434056,GSM434057,GSM434058,GSM434059,GSM434060,GSM434061,GSM434062,GSM434063,GSM434064,GSM458579,GSM458580,GSM458581,GSM458582,GSM469991,GSM470000
|
2 |
+
Lung_Cancer,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0
|
3 |
+
Age,41.0,35.0,61.0,37.0,47.0,38.0,49.0,45.0,36.0,38.0,35.0,46.0,37.0,45.0,48.0,50.0,46.0,56.0,59.0,49.0,34.0,44.0,45.0,45.0,29.0,42.0,56.0,47.0,47.0,50.0,55.0,59.0,51.0,46.0,56.0,60.0,46.0,52.0,40.0,45.0,41.0,47.0,41.0,48.0,43.0,41.0,41.0,35.0,37.0,31.0,45.0,50.0,46.0,49.0,40.0,51.0,48.0,53.0,42.0,36.0,44.0,62.0,44.0,60.0,49.0,36.0,38.0,73.0,49.0,22.0,29.0,39.0,48.0,39.0,54.0,43.0,36.0,41.0,46.0,47.0,41.0,42.0,46.0,41.0,32.0,27.0,35.0,40.0,48.0,47.0,41.0,62.0,47.0,39.0,27.0,24.0,31.0,43.0,26.0,33.0,45.0,48.0,57.0,66.0,45.0,45.0,48.0,47.0,21.0,45.0,55.0,47.0,39.0,68.0,26.0,45.0,40.0,40.0,46.0,47.0,29.0,30.0,47.0,43.0,48.0,24.0,27.0,54.0,73.0,27.0,34.0,27.0,47.0,37.0,48.0
|
4 |
+
Gender,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0
|
output/preprocess/Lung_Cancer/clinical_data/GSE244117.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
GSM7807444,GSM7807445,GSM7807446,GSM7807447,GSM7807448,GSM7807449,GSM7807450,GSM7807451,GSM7807452,GSM7807453,GSM7807454,GSM7807455,GSM7807456,GSM7807457,GSM7807458,GSM7807459,GSM7807460,GSM7807461,GSM7807462,GSM7807463,GSM7807464,GSM7807465,GSM7807466,GSM7807467,GSM7807468,GSM7807469,GSM7807470,GSM7807471,GSM7807472,GSM7807473,GSM7807474,GSM7807475,GSM7807476,GSM7807477,GSM7807478,GSM7807479,GSM7807480,GSM7807481,GSM7807482,GSM7807483,GSM7807484,GSM7807485,GSM7807486,GSM7807487,GSM7807488,GSM7807489,GSM7807490,GSM7807491,GSM7807492,GSM7807493,GSM7807494,GSM7807495,GSM7807496,GSM7807497,GSM7807498,GSM7807499,GSM7807500,GSM7807501,GSM7807502,GSM7807503,GSM7807504,GSM7807505,GSM7807506,GSM7807507,GSM7807508,GSM7807509,GSM7807510,GSM7807511,GSM7807512,GSM7807513,GSM7807514,GSM7807515,GSM7807516,GSM7807517,GSM7807518,GSM7807519,GSM7807520,GSM7807521,GSM7807522,GSM7807523,GSM7807524,GSM7807525,GSM7807526,GSM7807527,GSM7807528,GSM7807529,GSM7807530,GSM7807531,GSM7807532,GSM7807533,GSM7807534,GSM7807535,GSM7807536,GSM7807537,GSM7807538,GSM7807539
|
2 |
+
,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
3 |
+
,63.0,63.0,63.0,63.0,63.0,63.0,63.0,63.0,63.0,69.0,69.0,69.0,69.0,42.0,42.0,42.0,43.0,43.0,43.0,43.0,43.0,43.0,76.0,76.0,76.0,76.0,76.0,76.0,76.0,76.0,76.0,76.0,76.0,73.0,73.0,73.0,73.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,54.0,54.0,54.0,54.0,54.0,54.0,42.0,42.0,42.0,42.0,42.0,67.0,67.0,67.0,67.0,67.0,67.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0
|
4 |
+
,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
output/preprocess/Lung_Cancer/clinical_data/GSE244123.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
,GSM7807444,GSM7807445,GSM7807446,GSM7807447,GSM7807448,GSM7807449,GSM7807450,GSM7807451,GSM7807452,GSM7807453,GSM7807454,GSM7807455,GSM7807456,GSM7807457,GSM7807458,GSM7807459,GSM7807460,GSM7807461,GSM7807462,GSM7807463,GSM7807464,GSM7807465,GSM7807466,GSM7807467,GSM7807468,GSM7807469,GSM7807470,GSM7807471,GSM7807472,GSM7807473,GSM7807474,GSM7807475,GSM7807476,GSM7807477,GSM7807478,GSM7807479,GSM7807480,GSM7807481,GSM7807482,GSM7807483,GSM7807484,GSM7807485,GSM7807486,GSM7807487,GSM7807488,GSM7807489,GSM7807490,GSM7807491,GSM7807492,GSM7807493,GSM7807494,GSM7807495,GSM7807496,GSM7807497,GSM7807498,GSM7807499,GSM7807500,GSM7807501,GSM7807502,GSM7807503,GSM7807504,GSM7807505,GSM7807506,GSM7807507,GSM7807508,GSM7807509,GSM7807510,GSM7807511,GSM7807512,GSM7807513,GSM7807514,GSM7807515,GSM7807516,GSM7807517,GSM7807518,GSM7807519,GSM7807520,GSM7807521,GSM7807522,GSM7807523,GSM7807524,GSM7807525,GSM7807526,GSM7807527,GSM7807528,GSM7807529,GSM7807530,GSM7807531,GSM7807532,GSM7807533,GSM7807534,GSM7807535,GSM7807536,GSM7807537,GSM7807538,GSM7807539
|
2 |
+
Lung_Cancer,,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
3 |
+
Age,,63.0,63.0,63.0,63.0,63.0,63.0,63.0,63.0,63.0,69.0,69.0,69.0,69.0,42.0,42.0,42.0,43.0,43.0,43.0,43.0,43.0,43.0,76.0,76.0,76.0,76.0,76.0,76.0,76.0,76.0,76.0,76.0,76.0,73.0,73.0,73.0,73.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,44.0,54.0,54.0,54.0,54.0,54.0,54.0,42.0,42.0,42.0,42.0,42.0,67.0,67.0,67.0,67.0,67.0,67.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,69.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0,48.0
|
4 |
+
Gender,,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
output/preprocess/Lung_Cancer/clinical_data/GSE244645.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
,GSM7823140,GSM7823141,GSM7823142,GSM7823143,GSM7823144,GSM7823145,GSM7823146,GSM7823147,GSM7823148,GSM7823149,GSM7823150,GSM7823151,GSM7823152,GSM7823153,GSM7823154,GSM7823155,GSM7823156,GSM7823157,GSM7823158,GSM7823159,GSM7823160,GSM7823161,GSM7823162,GSM7823163,GSM7823164,GSM7823165,GSM7823166,GSM7823167,GSM7823168,GSM7823169,GSM7823170,GSM7823171,GSM7823172,GSM7823173,GSM7823174,GSM7823175,GSM7823176,GSM7823177,GSM7823178,GSM7823179,GSM7823180,GSM7823181,GSM7823182,GSM7823183,GSM7823184,GSM7823185,GSM7823186,GSM7823187,GSM7823188,GSM7823189,GSM7823190,GSM7823191,GSM7823192,GSM7823193,GSM7823194,GSM7823195,GSM7823196,GSM7823197,GSM7823198,GSM7823199,GSM7823200,GSM7823201,GSM7823202,GSM7823203,GSM7823204,GSM7823205,GSM7823206,GSM7823207,GSM7823208
|
2 |
+
Lung_Cancer,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
|
3 |
+
Age,68.0,71.0,56.0,56.0,64.0,64.0,58.0,58.0,67.0,67.0,64.0,64.0,77.0,57.0,68.0,68.0,61.0,61.0,75.0,75.0,65.0,65.0,69.0,69.0,65.0,65.0,50.0,70.0,57.0,57.0,55.0,55.0,68.0,72.0,72.0,44.0,54.0,54.0,47.0,47.0,69.0,69.0,43.0,43.0,57.0,57.0,53.0,53.0,45.0,46.0,46.0,56.0,56.0,67.0,67.0,70.0,70.0,61.0,61.0,68.0,68.0,56.0,56.0,39.0,39.0,61.0,61.0,48.0,48.0
|
4 |
+
Gender,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
output/preprocess/Lung_Cancer/clinical_data/GSE244647.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
,GSM7823140,GSM7823141,GSM7823142,GSM7823143,GSM7823144,GSM7823145,GSM7823146,GSM7823147,GSM7823148,GSM7823149,GSM7823150,GSM7823151,GSM7823152,GSM7823153,GSM7823154,GSM7823155,GSM7823156,GSM7823157,GSM7823158,GSM7823159,GSM7823160,GSM7823161,GSM7823162,GSM7823163,GSM7823164,GSM7823165,GSM7823166,GSM7823167,GSM7823168,GSM7823169,GSM7823170,GSM7823171,GSM7823172,GSM7823173,GSM7823174,GSM7823175,GSM7823176,GSM7823177,GSM7823178,GSM7823179,GSM7823180,GSM7823181,GSM7823182,GSM7823183,GSM7823184,GSM7823185,GSM7823186,GSM7823187,GSM7823188,GSM7823189,GSM7823190,GSM7823191,GSM7823192,GSM7823193,GSM7823194,GSM7823195,GSM7823196,GSM7823197,GSM7823198,GSM7823199,GSM7823200,GSM7823201,GSM7823202,GSM7823203,GSM7823204,GSM7823205,GSM7823206,GSM7823207,GSM7823208
|
2 |
+
Lung_Cancer,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0
|
3 |
+
Age,68.0,71.0,56.0,56.0,64.0,64.0,58.0,58.0,67.0,67.0,64.0,64.0,77.0,57.0,68.0,68.0,61.0,61.0,75.0,75.0,65.0,65.0,69.0,69.0,65.0,65.0,50.0,70.0,57.0,57.0,55.0,55.0,68.0,72.0,72.0,44.0,54.0,54.0,47.0,47.0,69.0,69.0,43.0,43.0,57.0,57.0,53.0,53.0,45.0,46.0,46.0,56.0,56.0,67.0,67.0,70.0,70.0,61.0,61.0,68.0,68.0,56.0,56.0,39.0,39.0,61.0,61.0,48.0,48.0
|
4 |
+
Gender,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
output/preprocess/Lung_Cancer/clinical_data/GSE248830.csv
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
,GSM7920782,GSM7920783,GSM7920784,GSM7920785,GSM7920786,GSM7920787,GSM7920788,GSM7920789,GSM7920790,GSM7920791,GSM7920792,GSM7920793,GSM7920794,GSM7920795,GSM7920796,GSM7920797,GSM7920798,GSM7920799,GSM7920800,GSM7920801,GSM7920802,GSM7920803,GSM7920804,GSM7920805,GSM7920806,GSM7920807,GSM7920808,GSM7920809,GSM7920810,GSM7920811,GSM7920812,GSM7920813,GSM7920814,GSM7920815,GSM7920816,GSM7920817,GSM7920818,GSM7920819,GSM7920820,GSM7920821,GSM7920822,GSM7920823,GSM7920824,GSM7920825
|
2 |
+
Lung_Cancer,0.0,0.0,,0.0,0.0,,0.0,0.0,0.0,0.0,0.0,0.0,0.0,,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
|
3 |
+
Age,49.0,44.0,41.0,40.0,48.0,42.0,47.0,53.0,41.0,74.0,58.0,51.0,55.0,46.0,46.0,48.0,44.0,49.0,59.0,50.0,74.0,46.0,40.0,57.0,60.0,55.0,69.0,,,57.0,,65.0,37.0,46.0,63.0,60.0,58.0,70.0,66.0,64.0,60.0,50.0,66.0,74.0
|
4 |
+
Gender,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0
|
output/preprocess/Lung_Cancer/clinical_data/GSE249262.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
,GSM7932467,GSM7932468,GSM7932469,GSM7932470,GSM7932471,GSM7932472,GSM7932473,GSM7932474,GSM7932475,GSM7932476,GSM7932477,GSM7932478,GSM7932479,GSM7932480,GSM7932481,GSM7932482,GSM7932483,GSM7932484,GSM7932485,GSM7932486,GSM7932487,GSM7932488,GSM7932489,GSM7932490,GSM7932491,GSM7932492,GSM7932493,GSM7932494,GSM7932495,GSM7932496,GSM7932497,GSM7932498,GSM7932499,GSM7932500,GSM7932501,GSM7932502,GSM7932503,GSM7932504,GSM7932505,GSM7932506,GSM7932507,GSM7932508,GSM7932509,GSM7932510,GSM7932511,GSM7932512,GSM7932513,GSM7932514,GSM7932515,GSM7932516,GSM7932517,GSM7932518,GSM7932519,GSM7932520,GSM7932521,GSM7932522,GSM7932523,GSM7932524,GSM7932525,GSM7932526,GSM7932527,GSM7932528,GSM7932529,GSM7932530,GSM7932531,GSM7932532,GSM7932533,GSM7932534,GSM7932535,GSM7932536,GSM7932537,GSM7932538,GSM7932539,GSM7932540,GSM7932541,GSM7932542
|
2 |
+
Lung_Cancer,1.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,,,,,,,,,,,,,,,
|
output/preprocess/Lung_Cancer/clinical_data/GSE280643.csv
ADDED
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
1 |
+
,GSM8602788,GSM8602789,GSM8602790,GSM8602791,GSM8602792,GSM8602793,GSM8602794,GSM8602795,GSM8602796,GSM8602797,GSM8602798,GSM8602799,GSM8602800,GSM8602801,GSM8602802,GSM8602803,GSM8602804,GSM8602805,GSM8602806,GSM8602807,GSM8602808,GSM8602809,GSM8602810,GSM8602811
|
2 |
+
Lung_Cancer,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,,,,,,,1.0,1.0,1.0,1.0,1.0,1.0
|
output/preprocess/Lung_Cancer/clinical_data/TCGA.csv
ADDED
@@ -0,0 +1,1130 @@
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1 |
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output/preprocess/Lung_Cancer/cohort_info.json
ADDED
@@ -0,0 +1,102 @@
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|
40 |
+
"sample_size": null
|
41 |
+
},
|
42 |
+
"GSE244645": {
|
43 |
+
"is_usable": true,
|
44 |
+
"is_gene_available": true,
|
45 |
+
"is_trait_available": true,
|
46 |
+
"is_available": true,
|
47 |
+
"is_biased": false,
|
48 |
+
"has_age": true,
|
49 |
+
"has_gender": true,
|
50 |
+
"sample_size": 69
|
51 |
+
},
|
52 |
+
"GSE244123": {
|
53 |
+
"is_usable": true,
|
54 |
+
"is_gene_available": true,
|
55 |
+
"is_trait_available": true,
|
56 |
+
"is_available": true,
|
57 |
+
"is_biased": false,
|
58 |
+
"has_age": true,
|
59 |
+
"has_gender": true,
|
60 |
+
"sample_size": 95
|
61 |
+
},
|
62 |
+
"GSE244117": {
|
63 |
+
"is_usable": true,
|
64 |
+
"is_gene_available": true,
|
65 |
+
"is_trait_available": true,
|
66 |
+
"is_available": true,
|
67 |
+
"is_biased": false,
|
68 |
+
"has_age": true,
|
69 |
+
"has_gender": true,
|
70 |
+
"sample_size": 95
|
71 |
+
},
|
72 |
+
"GSE222124": {
|
73 |
+
"is_usable": false,
|
74 |
+
"is_gene_available": false,
|
75 |
+
"is_trait_available": false,
|
76 |
+
"is_available": false,
|
77 |
+
"is_biased": null,
|
78 |
+
"has_age": null,
|
79 |
+
"has_gender": null,
|
80 |
+
"sample_size": null
|
81 |
+
},
|
82 |
+
"GSE21359": {
|
83 |
+
"is_usable": true,
|
84 |
+
"is_gene_available": true,
|
85 |
+
"is_trait_available": true,
|
86 |
+
"is_available": true,
|
87 |
+
"is_biased": false,
|
88 |
+
"has_age": true,
|
89 |
+
"has_gender": true,
|
90 |
+
"sample_size": 135
|
91 |
+
},
|
92 |
+
"TCGA": {
|
93 |
+
"is_usable": true,
|
94 |
+
"is_gene_available": true,
|
95 |
+
"is_trait_available": true,
|
96 |
+
"is_available": true,
|
97 |
+
"is_biased": false,
|
98 |
+
"has_age": true,
|
99 |
+
"has_gender": true,
|
100 |
+
"sample_size": 1129
|
101 |
+
}
|
102 |
+
}
|
output/preprocess/Lung_Cancer/gene_data/GSE21359.csv
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:a449edf4d094d7479ffb0808221c001aecaab141df3e23788d9e6083a87d5b8a
|
3 |
+
size 27473130
|