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  1. .gitattributes +44 -0
  2. output/preprocess/Pheochromocytoma_and_Paraganglioma/TCGA.csv +3 -0
  3. output/preprocess/Polycystic_Ovary_Syndrome/TCGA.csv +3 -0
  4. output/preprocess/Prostate_Cancer/TCGA.csv +3 -0
  5. output/preprocess/Prostate_Cancer/gene_data/GSE209954.csv +3 -0
  6. output/preprocess/Prostate_Cancer/gene_data/TCGA.csv +3 -0
  7. output/preprocess/Psoriasis/GSE178228.csv +3 -0
  8. output/preprocess/Psoriasis/gene_data/GSE123086.csv +3 -0
  9. output/preprocess/Psoriasis/gene_data/GSE178228.csv +3 -0
  10. output/preprocess/Psoriasis/gene_data/GSE252029.csv +3 -0
  11. output/preprocess/Psoriatic_Arthritis/gene_data/GSE142049.csv +3 -0
  12. output/preprocess/Psoriatic_Arthritis/gene_data/GSE57383.csv +3 -0
  13. output/preprocess/Psoriatic_Arthritis/gene_data/GSE57386.csv +3 -0
  14. output/preprocess/Psoriatic_Arthritis/gene_data/GSE57405.csv +3 -0
  15. output/preprocess/Psoriatic_Arthritis/gene_data/GSE61281.csv +3 -0
  16. output/preprocess/Rectal_Cancer/GSE123390.csv +3 -0
  17. output/preprocess/Rectal_Cancer/GSE150082.csv +3 -0
  18. output/preprocess/Rectal_Cancer/GSE40492.csv +3 -0
  19. output/preprocess/Rectal_Cancer/GSE94104.csv +3 -0
  20. output/preprocess/Rectal_Cancer/TCGA.csv +3 -0
  21. output/preprocess/Rectal_Cancer/clinical_data/GSE119409.csv +3 -0
  22. output/preprocess/Rectal_Cancer/clinical_data/GSE123390.csv +2 -0
  23. output/preprocess/Rectal_Cancer/clinical_data/GSE133057.csv +4 -0
  24. output/preprocess/Rectal_Cancer/clinical_data/GSE139255.csv +2 -0
  25. output/preprocess/Rectal_Cancer/clinical_data/GSE145037.csv +4 -0
  26. output/preprocess/Rectal_Cancer/clinical_data/GSE150082.csv +4 -0
  27. output/preprocess/Rectal_Cancer/clinical_data/GSE170999.csv +77 -0
  28. output/preprocess/Rectal_Cancer/clinical_data/GSE40492.csv +4 -0
  29. output/preprocess/Rectal_Cancer/clinical_data/GSE94104.csv +2 -0
  30. output/preprocess/Rectal_Cancer/clinical_data/TCGA.csv +187 -0
  31. output/preprocess/Rectal_Cancer/gene_data/GSE109057.csv +3 -0
  32. output/preprocess/Rectal_Cancer/gene_data/GSE119409.csv +0 -0
  33. output/preprocess/Rectal_Cancer/gene_data/GSE123390.csv +3 -0
  34. output/preprocess/Rectal_Cancer/gene_data/GSE133057.csv +0 -0
  35. output/preprocess/Rectal_Cancer/gene_data/GSE139255.csv +0 -0
  36. output/preprocess/Rectal_Cancer/gene_data/GSE145037.csv +0 -0
  37. output/preprocess/Rectal_Cancer/gene_data/GSE150082.csv +3 -0
  38. output/preprocess/Rectal_Cancer/gene_data/GSE170999.csv +3 -0
  39. output/preprocess/Rectal_Cancer/gene_data/GSE40492.csv +3 -0
  40. output/preprocess/Rectal_Cancer/gene_data/GSE94104.csv +3 -0
  41. output/preprocess/Rectal_Cancer/gene_data/TCGA.csv +3 -0
  42. output/preprocess/Red_Hair/TCGA.csv +3 -0
  43. output/preprocess/Red_Hair/clinical_data/GSE207744.csv +2 -0
  44. output/preprocess/Red_Hair/clinical_data/TCGA.csv +482 -0
  45. output/preprocess/Red_Hair/cohort_info.json +22 -0
  46. output/preprocess/Red_Hair/gene_data/GSE207744.csv +3 -0
  47. output/preprocess/Retinoblastoma/GSE208143.csv +0 -0
  48. output/preprocess/Retinoblastoma/GSE25307.csv +3 -0
  49. output/preprocess/Retinoblastoma/GSE29683.csv +63 -0
  50. output/preprocess/Retinoblastoma/clinical_data/GSE208143.csv +3 -0
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2
+ Rectal_Cancer,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0
output/preprocess/Rectal_Cancer/clinical_data/GSE145037.csv ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ ,0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21
2
+ Rectal_Cancer,0.0,1.0,,,,,,,,,,,,,,,,,,,,
3
+ Age,34.0,66.0,69.0,65.0,72.0,64.0,53.0,60.0,44.0,58.0,41.0,52.0,48.0,49.0,61.0,63.0,75.0,46.0,59.0,70.0,68.0,73.0
4
+ Gender,1.0,0.0,,,,,,,,,,,,,,,,,,,,
output/preprocess/Rectal_Cancer/clinical_data/GSE150082.csv ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ ,GSM4523129,GSM4523130,GSM4523131,GSM4523132,GSM4523133,GSM4523134,GSM4523135,GSM4523136,GSM4523137,GSM4523138,GSM4523139,GSM4523140,GSM4523141,GSM4523142,GSM4523143,GSM4523144,GSM4523145,GSM4523146,GSM4523147,GSM4523148,GSM4523149,GSM4523150,GSM4523151,GSM4523152,GSM4523153,GSM4523154,GSM4523155,GSM4523156,GSM4523157,GSM4523158,GSM4523159,GSM4523160,GSM4523161,GSM4523162,GSM4523163,GSM4523164,GSM4523165,GSM4523166,GSM4523167
2
+ Rectal_Cancer,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0
3
+ Age,70.0,74.0,45.0,45.0,54.0,72.0,57.0,66.0,71.0,47.0,66.0,61.0,64.0,61.0,59.0,34.0,63.0,66.0,46.0,57.0,64.0,55.0,75.0,61.0,42.0,63.0,42.0,69.0,49.0,68.0,60.0,69.0,58.0,30.0,49.0,74.0,56.0,64.0,66.0
4
+ Gender,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0
output/preprocess/Rectal_Cancer/clinical_data/GSE170999.csv ADDED
@@ -0,0 +1,77 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,Rectal_Cancer
2
+ GSM5215860,
3
+ GSM5215861,
4
+ GSM5215862,
5
+ GSM5215863,
6
+ GSM5215864,
7
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8
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9
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10
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11
+ GSM5215869,
12
+ GSM5215870,
13
+ GSM5215871,
14
+ GSM5215872,
15
+ GSM5215873,
16
+ GSM5215874,
17
+ GSM5215875,
18
+ GSM5215876,
19
+ GSM5215877,
20
+ GSM5215878,
21
+ GSM5215879,
22
+ GSM5215880,
23
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24
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25
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26
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27
+ GSM5215885,
28
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29
+ GSM5215887,
30
+ GSM5215888,
31
+ GSM5215889,
32
+ GSM5215890,
33
+ GSM5215891,
34
+ GSM5215892,
35
+ GSM5215893,
36
+ GSM5215894,
37
+ GSM5215895,
38
+ GSM5215896,
39
+ GSM5215897,
40
+ GSM5215898,
41
+ GSM5215899,
42
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43
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44
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45
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46
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47
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48
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49
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50
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51
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52
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53
+ GSM5215911,
54
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55
+ GSM5215913,
56
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57
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58
+ GSM5215916,
59
+ GSM5215917,
60
+ GSM5215918,
61
+ GSM5215919,
62
+ GSM5215920,
63
+ GSM5215921,
64
+ GSM5215922,
65
+ GSM5215923,
66
+ GSM5215924,
67
+ GSM5215925,
68
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69
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70
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71
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72
+ GSM5215930,
73
+ GSM5215931,
74
+ GSM5215932,
75
+ GSM5215933,
76
+ GSM5215934,
77
+ GSM5215935,
output/preprocess/Rectal_Cancer/clinical_data/GSE40492.csv ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ ,GSM994976,GSM994977,GSM994978,GSM994979,GSM994980,GSM994981,GSM994982,GSM994983,GSM994984,GSM994985,GSM994986,GSM994987,GSM994988,GSM994989,GSM994990,GSM994991,GSM994992,GSM994993,GSM994994,GSM994995,GSM994996,GSM994997,GSM994998,GSM994999,GSM995000,GSM995001,GSM995002,GSM995003,GSM995004,GSM995005,GSM995006,GSM995007,GSM995008,GSM995009,GSM995010,GSM995011,GSM995012,GSM995013,GSM995014,GSM995015,GSM995016,GSM995017,GSM995018,GSM995019,GSM995020,GSM995021,GSM995022,GSM995023,GSM995024,GSM995025,GSM995026,GSM995027,GSM995028,GSM995029,GSM995030,GSM995031,GSM995032,GSM995033,GSM995034,GSM995035,GSM995036,GSM995037,GSM995038,GSM995039,GSM995040,GSM995041,GSM995042,GSM995043,GSM995044,GSM995045,GSM995046,GSM995047,GSM995048,GSM995049,GSM995050,GSM995051,GSM995052,GSM995053,GSM995054,GSM995055,GSM995056,GSM995057,GSM995058,GSM995059,GSM995060,GSM995061,GSM995062,GSM995063,GSM995064,GSM995065,GSM995066,GSM995067,GSM995068,GSM995069,GSM995070,GSM995071,GSM995072,GSM995073,GSM995074,GSM995075,GSM995076,GSM995077,GSM995078,GSM995079,GSM995080,GSM995081,GSM995082,GSM995083,GSM995084,GSM995085,GSM995086,GSM995087,GSM995088,GSM995089,GSM995090,GSM995091,GSM995092,GSM995093,GSM995094,GSM995095,GSM995096,GSM995097,GSM995098,GSM995099,GSM995100,GSM995101,GSM995102,GSM995103,GSM995104,GSM995105,GSM995106,GSM995107,GSM995108,GSM995109,GSM995110,GSM995111,GSM995112,GSM995113,GSM995114,GSM995115,GSM995116,GSM995117,GSM995118,GSM995119,GSM995120,GSM995121,GSM995122,GSM995123,GSM995124,GSM995125,GSM995126,GSM995127,GSM995128,GSM995129,GSM995130,GSM995131,GSM995132,GSM995133,GSM995134,GSM995135,GSM995136,GSM995137,GSM995138,GSM995139,GSM995140,GSM995141,GSM995142,GSM995143,GSM995144,GSM995145,GSM995146,GSM995147,GSM995148,GSM995149,GSM995150,GSM995151,GSM995152,GSM995153,GSM995154,GSM995155,GSM995156,GSM995157,GSM995158,GSM995159,GSM995160,GSM995161,GSM995162,GSM995163,GSM995164,GSM995165,GSM995166,GSM995167,GSM995168,GSM995169,GSM995170,GSM995171,GSM995172,GSM995173,GSM995174,GSM995175,GSM995176,GSM995177,GSM995178,GSM995179,GSM995180,GSM995181,GSM995182,GSM995183,GSM995184,GSM995185,GSM995186,GSM995187,GSM995188,GSM995189,GSM995190,GSM995191,GSM995192,GSM995193,GSM995194,GSM995195,GSM995196,GSM995197,GSM995198,GSM995199,GSM995200,GSM995201,GSM995202,GSM995203,GSM995204,GSM995205,GSM995206,GSM995207,GSM995208,GSM995209,GSM995210,GSM995211,GSM995212,GSM995213,GSM995214,GSM995215,GSM995216,GSM995217,GSM995218,GSM995219,GSM995220
2
+ Rectal_Cancer,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0
3
+ Age,55.5,65.6,62.6,61.8,52.1,59.1,70.6,60.6,55.0,53.1,58.5,68.4,58.8,70.0,77.5,68.4,75.2,76.3,38.2,61.1,69.4,54.2,77.7,57.4,61.2,56.5,47.0,62.7,51.2,73.2,47.2,72.7,38.8,75.4,79.9,60.9,76.2,49.4,49.9,58.1,77.2,72.3,59.0,76.2,69.0,61.3,66.3,65.5,68.3,78.8,65.8,57.0,65.6,74.1,48.1,57.2,61.8,65.4,49.1,63.7,58.5,66.3,62.0,57.3,48.3,71.1,71.2,52.6,70.3,54.0,53.7,60.0,68.2,65.7,79.7,81.3,66.3,59.2,57.3,81.5,62.3,63.6,66.8,71.5,76.7,76.5,58.3,76.6,62.5,51.2,67.8,63.3,76.3,41.8,58.0,65.7,59.5,53.6,56.8,60.7,64.0,55.5,50.0,35.6,77.7,65.1,74.6,63.0,73.2,73.3,54.8,61.2,63.2,63.9,75.4,68.2,51.1,46.3,59.4,70.9,59.8,81.1,72.9,70.8,63.8,63.6,72.3,51.9,69.5,65.1,54.8,56.2,66.2,79.5,67.5,54.7,73.7,61.9,73.9,50.5,76.9,41.7,73.0,41.6,67.0,61.9,42.0,68.7,59.3,68.0,78.7,57.2,63.6,60.7,72.0,62.5,51.7,56.5,74.9,61.5,69.8,63.5,58.9,53.1,65.3,71.9,46.2,63.8,47.5,52.4,64.3,65.1,47.6,60.3,70.9,56.3,53.6,55.8,61.2,59.3,62.4,40.8,68.4,62.6,60.2,72.0,70.9,67.5,70.4,61.4,53.7,36.2,58.6,53.8,61.2,67.0,66.8,69.3,60.6,75.0,55.7,48.5,76.2,70.8,76.7,64.3,77.2,70.1,62.5,52.7,60.4,53.3,66.4,56.2,60.7,61.9,69.6,63.2,81.3,58.3,62.8,75.9,74.3,71.4,74.2,76.5,77.5,59.8,46.0,80.7,65.6,75.5,59.9,72.8,57.5,70.7,74.8,75.7,57.5,70.9,66.9,74.3,43.3,83.1,84.3
4
+ Gender,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0
output/preprocess/Rectal_Cancer/clinical_data/GSE94104.csv ADDED
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output/preprocess/Retinoblastoma/clinical_data/GSE208143.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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