# Path Configuration from tools.preprocess import * # Processing context trait = "Migraine" # Input paths tcga_root_dir = "../DATA/TCGA" # Output paths out_data_file = "./output/preprocess/3/Migraine/TCGA.csv" out_gene_data_file = "./output/preprocess/3/Migraine/gene_data/TCGA.csv" out_clinical_data_file = "./output/preprocess/3/Migraine/clinical_data/TCGA.csv" json_path = "./output/preprocess/3/Migraine/cohort_info.json" # Review the TCGA subdirectories for datasets relevant to Migraine # No directory clearly related to migraine was found # Record that this trait cannot be processed due to lack of suitable data validate_and_save_cohort_info( is_final=False, cohort="TCGA", info_path=json_path, is_gene_available=True, # TCGA has gene expression data is_trait_available=False # No suitable migraine data found )