add yamls

available_splits.yaml

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+bcnb:
+    - er
+    - pr
+    - her2
+mut-het-rcc:
+    - BAP1_mutation
+    - PBRM1_mutation
+    - SETD2_mutation
+imp:
+    - grade
+panda:
+    - isup_grade
+cptac_brca:
+    - PIK3CA_mutation
+    - TP53_mutation
+cptac_ccrcc:
+    - BAP1_mutation
+    - PBRM1_mutation
+    - OS
+cptac_coad:
+    - KRAS_mutation
+    - TP53_mutation
+cptac_gbm:
+    - EGFR_mutation
+    - TP53_mutation
+cptac_hnsc:
+    - CASP8_mutation
+    - OS
+cptac_lscc:
+    - KEAP1_mutation
+    - ARID1A_mutation
+cptac_luad:
+    - EGFR_mutation
+    - STK11_mutation
+    - TP53_mutation
+    - OS
+cptac_pda:
+    - SMAD4_mutation
+    - OS
+bracs:
+    - slidelevel_fine
+    - slidelevel_coarse
+ebrains:
+    - diagnosis
+    - diagnosis_group
+ovarian:
+    - response
+nadt:
+    - response
+natbrca:
+    - lymphovascular_invasion
+sr386_:
+    - braf_mutant_binary
+    - ras_mutant_binary
+    - mmr_loss_binary
+    - died_within_5_years
+    - OS
+mbc_:
+    - Recist
+    - OS
+boehmk_:
+    - PFS

bcnb/about.yaml

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+organ: breast
+source: bcnb
+public: true
+link: https://bupt-ai-cz.github.io/BCNB/
+license: |
+  This dataset is made freely available to academic and non-academic entities for non-commercial purposes such as academic research, teaching, scientific publications, or personal experimentation. Permission is granted to use the data given that you agree to our license terms bellow:
+  1. That you include a reference to the dataset in any work that makes use of the dataset. For research papers, cite our preferred publication as listed on our website; for other media cite our preferred publication as listed on our website or link to the website.
+  2. That you do not distribute this dataset or modified versions. It is permissible to distribute derivative works in as far as they are abstract representations of this dataset (such as models trained on it or additional annotations that do not directly include any of our data).
+  3. That you may not use the dataset or any derivative work for commercial purposes as, for example, licensing or selling the data, or using the data with a purpose to procure a commercial gain.
+  4. That all rights not expressly granted to you are reserved by us.

boehmk_/about.yaml

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+organ: ovary
+source: boehmk
+public: true
+link: https://www.synapse.org/Synapse:syn25946117/wiki/611576
+license: UNK

bracs/about.yaml

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+organ: breast
+source: bracs
+public: true
+link: https://www.bracs.icar.cnr.it/
+license: NA

cptac_brca/about.yaml

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+organ: breast
+source: cptac
+public: true
+link: https://www.cancerimagingarchive.net/collection/cptac-brca/
+license: CC BY 3.0

cptac_ccrcc/about.yaml

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+organ: kidney
+source: cptac
+public: true
+link: https://www.cancerimagingarchive.net/collection/cptac-ccrcc/
+license: CC BY 3.0

cptac_coad/about.yaml

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+organ: colon
+source: cptac
+public: true
+link: https://www.cancerimagingarchive.net/collection/cptac-coad/
+license: CC BY 3.0

cptac_gbm/about.yaml

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+organ: brain
+source: cptac
+public: true
+link: https://www.cancerimagingarchive.net/collection/cptac-gbm/
+license: CC BY 3.0

cptac_hnsc/about.yaml

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+organ: head_n_neck
+source: cptac
+public: true
+link: https://www.cancerimagingarchive.net/collection/cptac-hnsc/
+license: CC BY 3.0

cptac_lscc/about.yaml

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+organ: lung
+source: cptac
+public: true
+link: https://www.cancerimagingarchive.net/collection/cptac-lscc/
+license: CC BY 3.0

cptac_luad/about.yaml

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+organ: lung
+source: cptac
+public: true
+link: https://www.cancerimagingarchive.net/collection/cptac-luad/
+license: CC BY 3.0

cptac_pda/about.yaml

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+organ: pancreas
+source: cptac
+public: true
+link: https://www.cancerimagingarchive.net/collection/cptac-pda/
+license: CC BY 3.0

ebrains/about.yaml

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+organ: brain
+source: ebrains
+public: true
+link: https://doi.org/10.25493/WQ48-ZGX
+license: |
+  The use of this dataset requires that the user cites the associated DOI and adheres to the conditions of use that are contained in the Data Use Agreement. You may not use the dataset for commercial purposes.

imp/about.yaml

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+organ: colon
+source: IMP Diagnostics laboratory, Portugal
+public: true
+link: https://rdm.inesctec.pt/dataset/nis-2023-008
+license: CC BY-NC 2.0

mbc_/about.yaml

@@ -0,0 +1,5 @@
+organ: breast
+source: Georges François Leclerc Cancer Center
+public: true
+link: https://www.synapse.org/Synapse:syn59490671/wiki/628046
+license: UNK

mut-het-rcc/about.yaml

@@ -0,0 +1,5 @@
+organ: kidney
+source: mut-het-rcc
+public: true
+link: https://aacrjournals.org/cancerres/article/82/15/2792/707325/Intratumoral-Resolution-of-Driver-Gene-Mutation
+license: CC BY 4.0

nadt/about.yaml

@@ -0,0 +1,5 @@
+organ: prostate
+source: nadt
+public: true
+link: https://www.sciencedirect.com/science/article/pii/S0302283821002074?via%3Dihub
+license: CC BY 4.0

natbrca/about.yaml

@@ -0,0 +1,5 @@
+organ: breast
+source: natbrca
+public: true
+link: https://onlinelibrary.wiley.com/doi/10.1002/cyto.a.23244
+license: CC BY 4.0

ovarian/about.yaml

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+organ: ovary
+source: ovarian
+public: true
+link: https://www.nature.com/articles/s41597-022-01127-6
+license: CC BY 4.0

panda/about.yaml

@@ -0,0 +1,5 @@
+organ: prostate
+source: 'panda: prov-gigapath splits'
+public: true
+link: https://panda.grand-challenge.org/data/
+license: CC BY-NC-SA 4.0

sr386_/about.yaml

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+organ: colon
+source: surgen
+public: true
+link: https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD1285
+license: CC BY 4.0