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Plant Ontology (PO) |
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======================================================================================================================== |
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Overview |
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-------- |
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The Plant Ontology (PO) is a structured vocabulary and database resource that links plant anatomy, |
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morphology and growth and development to plant genomics data. |
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:Domain: Agricultural |
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:Category: Plant Anatomy, Morphology, Growth and Development |
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:Current Version: None |
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:Last Updated: None |
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:Creator: None |
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:License: Creative Commons 4.0 |
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:Format: OWL |
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:Download: `Plant Ontology (PO) Homepage <https://github.com/Planteome/plant-ontology>`_ |
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Graph Metrics |
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- **Total Nodes**: 20790 |
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- **Total Edges**: 60638 |
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- **Root Nodes**: 5936 |
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- **Leaf Nodes**: 11639 |
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Knowledge coverage |
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- Classes: 1874 |
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- Individuals: 0 |
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- Properties: 13 |
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Hierarchical metrics |
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-------------------- |
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- **Maximum Depth**: 5 |
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- **Minimum Depth**: 0 |
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- **Average Depth**: 1.07 |
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- **Depth Variance**: 0.72 |
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Breadth metrics |
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- **Maximum Breadth**: 8034 |
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- **Minimum Breadth**: 82 |
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- **Average Breadth**: 3462.50 |
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- **Breadth Variance**: 11752362.58 |
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Dataset Statistics |
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Generated Benchmarks: |
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- **Term Types**: 0 |
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- **Taxonomic Relations**: 2866 |
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- **Non-taxonomic Relations**: 36 |
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- **Average Terms per Type**: 0.00 |
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Usage Example |
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.. code-block:: python |
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from ontolearner.ontology import PO |
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# Initialize and load ontology |
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ontology = PO() |
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ontology.load("path/to/ontology.OWL") |
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# Extract datasets |
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data = ontology.extract() |
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# Access specific relations |
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term_types = data.term_typings |
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taxonomic_relations = data.type_taxonomies |
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non_taxonomic_relations = data.type_non_taxonomic_relations |
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