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"""
Get Results Massachusetts | MCR Labs
Copyright (c) 2022-2023 Cannlytics
Authors:
Keegan Skeate <https://github.com/keeganskeate>
Candace O'Sullivan-Sutherland <https://github.com/candy-o>
Created: 7/13/2022
Updated: 4/21/2024
License: CC-BY 4.0 <https://huggingface.co/datasets/cannlytics/cannabis_tests/blob/main/LICENSE>
Description:
Collect all public Massachusetts lab result data.
Data Sources:
- [MCR Labs Test Results](https://reports.mcrlabs.com)
"""
# Standard imports.
from datetime import datetime
import os
# External imports.
import pandas as pd
# Internal imports.
from cannlytics.data.coas.algorithms.mcrlabs import get_mcr_labs_test_results
from cannlytics.firebase import initialize_firebase, update_documents
from cannlytics.utils.utils import to_excel_with_style
def upload_results(
data: pd.DataFrame,
collection: str = 'public/data/results',
key: str = 'sample_hash',
verbose: bool = False,
):
"""Upload test results to Firestore."""
refs, updates = [], []
for _, obs in data.iterrows():
doc_id = obs[key]
refs.append(f'{collection}/{doc_id}')
updates.append(obs.to_dict())
database = initialize_firebase()
update_documents(refs, updates, database=database)
if verbose:
print('Uploaded %i lab results to Firestore.' % len(refs))
def get_results_mcrlabs(
data_dir: str = '.',
starting_page: int = 1,
pause: float = 3.33,
upload: bool = False,
):
"""Get all of the MCR Labs test results."""
# Get all of the results.
# FIXME: Fix the errors that are being skipped.
all_results = get_mcr_labs_test_results(
starting_page=starting_page,
pause=pause,
)
# Save the results to Excel.
data = pd.DataFrame(all_results)
date = datetime.now().isoformat()[:10]
if not os.path.exists(data_dir):
os.makedirs(data_dir)
datafile = f'{data_dir}/ma-results-{date}.xlsx'
try:
to_excel_with_style(data, datafile)
except:
data.to_excel(datafile)
print('Saved %i results to %s' % (len(data), datafile))
datafile = f'{data_dir}/ma-results-latest.csv'
data.to_csv(datafile, index=False)
# Optionally upload the data to Firestore.
if upload:
upload_results(data)
# Return the data.
return data
# === Test ===
# [✓] Tested: 2024-03-21 by Keegan Skeate <keegan@cannlytics>
if __name__ == '__main__':
# Get all of the MCR Labs test results.
ma_results = get_results_mcrlabs(
data_dir='D://data/massachusetts/results',
starting_page=1,
pause=3.33,
)
print('Finished collecting %i lab results from MCR Labs' % len(ma_results))
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