""" Get Results Massachusetts | MCR Labs Copyright (c) 2022-2023 Cannlytics Authors: Keegan Skeate Candace O'Sullivan-Sutherland Created: 7/13/2022 Updated: 4/21/2024 License: CC-BY 4.0 Description: Collect all public Massachusetts lab result data. Data Sources: - [MCR Labs Test Results](https://reports.mcrlabs.com) """ # Standard imports. from datetime import datetime import os # External imports. import pandas as pd # Internal imports. from cannlytics.data.coas.algorithms.mcrlabs import get_mcr_labs_test_results from cannlytics.firebase import initialize_firebase, update_documents from cannlytics.utils.utils import to_excel_with_style def upload_results( data: pd.DataFrame, collection: str = 'public/data/results', key: str = 'sample_hash', verbose: bool = False, ): """Upload test results to Firestore.""" refs, updates = [], [] for _, obs in data.iterrows(): doc_id = obs[key] refs.append(f'{collection}/{doc_id}') updates.append(obs.to_dict()) database = initialize_firebase() update_documents(refs, updates, database=database) if verbose: print('Uploaded %i lab results to Firestore.' % len(refs)) def get_results_mcrlabs( data_dir: str = '.', starting_page: int = 1, pause: float = 3.33, upload: bool = False, ): """Get all of the MCR Labs test results.""" # Get all of the results. # FIXME: Fix the errors that are being skipped. all_results = get_mcr_labs_test_results( starting_page=starting_page, pause=pause, ) # Save the results to Excel. data = pd.DataFrame(all_results) date = datetime.now().isoformat()[:10] if not os.path.exists(data_dir): os.makedirs(data_dir) datafile = f'{data_dir}/ma-results-{date}.xlsx' try: to_excel_with_style(data, datafile) except: data.to_excel(datafile) print('Saved %i results to %s' % (len(data), datafile)) datafile = f'{data_dir}/ma-results-latest.csv' data.to_csv(datafile, index=False) # Optionally upload the data to Firestore. if upload: upload_results(data) # Return the data. return data # === Test === # [✓] Tested: 2024-03-21 by Keegan Skeate if __name__ == '__main__': # Get all of the MCR Labs test results. ma_results = get_results_mcrlabs( data_dir='D://data/massachusetts/results', starting_page=1, pause=3.33, ) print('Finished collecting %i lab results from MCR Labs' % len(ma_results))