Datasets:
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license: cc-by-nd-4.0
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---
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license: cc-by-nd-4.0
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tags:
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- chemistry
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- biology
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- molecular dynamics
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- neural network potential
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---
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# mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics
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This dataset comprises all-atom systems for 5,398 CATH domains, modeled with a state-of-the-art classical force field, and simulated in five replicates each at five temperatures from 320 K to 413 K.
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---
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## Availability
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- torchmd-net dataloader
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- playmolecule
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- vmd script to load and analysis
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---
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## Citing The Dataset
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Please cite this manuscript for papers that use the mdCATH dataset:
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---
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## Dataset Size
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| Description | Value |
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|:---------------------|:-------------|
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| Domains | 5,398 |
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| Trajectories | 134,925 |
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| Total sampled time | 62.6 ms |
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| Total atoms | 11,671,592 |
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| Total amino acids | 740,813 |
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| Avg. traj. length | 464 ns |
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| Avg. system size | 2,162 atoms |
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| Avg. domain length | 137 AAs |
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| Total file size | 3.3 TB |
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