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- ---
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- license: cc-by-nd-4.0
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- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ ---
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+ license: cc-by-nd-4.0
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+ tags:
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+ - chemistry
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+ - biology
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+ - molecular dynamics
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+ - neural network potential
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+ ---
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+
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+ # mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics
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+ This dataset comprises all-atom systems for 5,398 CATH domains, modeled with a state-of-the-art classical force field, and simulated in five replicates each at five temperatures from 320 K to 413 K.
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+
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+ ---
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+ ## Availability
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+ - torchmd-net dataloader
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+ - playmolecule
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+ - vmd script to load and analysis
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+
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+ ---
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+ ## Citing The Dataset
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+ Please cite this manuscript for papers that use the mdCATH dataset:
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+
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+ ---
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+ ## Dataset Size
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+
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+ | Description | Value |
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+ |:---------------------|:-------------|
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+ | Domains | 5,398 |
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+ | Trajectories | 134,925 |
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+ | Total sampled time | 62.6 ms |
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+ | Total atoms | 11,671,592 |
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+ | Total amino acids | 740,813 |
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+ | Avg. traj. length | 464 ns |
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+ | Avg. system size | 2,162 atoms |
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+ | Avg. domain length | 137 AAs |
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+ | Total file size | 3.3 TB |
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+
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+ ---