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- ---
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- viewer: false
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- license: cc-by-nd-4.0
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- tags:
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- - chemistry
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- - biology
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- - molecular dynamics
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- - neural network potential
 
 
 
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  ---
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  # mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics
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- This dataset comprises all-atom systems for 5,398 CATH domains, modeled with a state-of-the-art classical force field, and simulated in five replicates each at five temperatures from 320 K to 413 K.
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  ---
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  ## Availability
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- - torchmd-net dataloader
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- - playmolecule
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- - vmd script to load and analysis
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  ---
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  ## Citing The Dataset
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  Please cite this manuscript for papers that use the mdCATH dataset:
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- Antonio Mirarchi, Toni Giorgino, Gianni De Fabritiis. "mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics" (to appear)
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  ---
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  ## Dataset Size
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  | Avg. domain length | 137 AAs |
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  | Total file size | 3.3 TB |
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- ---
 
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+ ---
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+ viewer: false
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+ ---
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+ license: CC BY-ND 4.0</br>
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+
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+ Tags:
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+
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+ - Chemistry
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+ - Biology
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+ - Molecular Dynamics
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+ - Neural Network Potential
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+
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  ---
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  # mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics
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+ This dataset comprises all-atom systems for 5,398 CATH domains, modeled with a state-of-the-art classical force field, and simulated in five replicates each at five temperatures from 320 K to 450 K.
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  ---
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  ## Availability
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+ - [torchmd-net dataloader](https://github.com/torchmd/torchmd-net/blob/main/torchmdnet/datasets/mdcath.py)
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+ - [playmolecule](https://open.playmolecule.org/mdcath)
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+ - [vmd script to load and analysis]
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  ---
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  ## Citing The Dataset
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  Please cite this manuscript for papers that use the mdCATH dataset:
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+ Antonio Mirarchi, Toni Giorgino, Gianni De Fabritiis. "mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics" ([arXiv:2407.14794](https://arxiv.org/abs/2407.14794v1))
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  ---
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  ## Dataset Size
 
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  | Avg. domain length | 137 AAs |
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  | Total file size | 3.3 TB |
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+ ---