haneulpark commited on
Commit
0af1ca5
·
verified ·
1 Parent(s): 4108381

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +29 -15
README.md CHANGED
@@ -227,7 +227,8 @@ Select the suitable preprocessing methods from the "preprocess.py" module.
227
 
228
 
229
  ### data-curation.py
230
- This file curates, i.e., merges datasets, selects most reliable values among multiple occurences, and adds 2D descriptors from 9 different standardized datasets that are obtained after the pre-processing step.
 
231
 
232
  inputs:
233
 
@@ -260,19 +261,32 @@ Prediction
260
  The original AqSoDB dataset does not define splits, so here we have used the `Realistic Split` method described
261
  in [(Martin et al., 2018)](https://doi.org/10.1021/acs.jcim.7b00166).
262
 
263
- ### License
264
- MIT License
265
-
266
- Copyright (c) 2019 Murat Cihan Sorkun
267
-
268
- Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"),
269
- to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense,
270
- and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
271
-
272
- The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
273
-
274
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
275
- FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
276
- WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
 
 
 
 
 
 
 
 
 
 
 
 
 
277
  ```
278
 
 
227
 
228
 
229
  ### data-curation.py
230
+ This file curates, i.e., merges datasets, selects most reliable values among multiple occurences,
231
+ and adds 2D descriptors from 9 different standardized datasets that are obtained after the pre-processing step.
232
 
233
  inputs:
234
 
 
261
  The original AqSoDB dataset does not define splits, so here we have used the `Realistic Split` method described
262
  in [(Martin et al., 2018)](https://doi.org/10.1021/acs.jcim.7b00166).
263
 
264
+ ### Citation
265
+ TY  - JOUR
266
+ AU  - Sorkun, Murat Cihan
267
+ AU  - Khetan, Abhishek
268
+ AU  - Er, S√ºleyman
269
+ PY  - 2019
270
+ DA  - 2019/08/08
271
+ TI  - AqSolDB, a curated reference set of aqueous solubility and 2D descriptors for a diverse set of compounds
272
+ JO  - Scientific Data
273
+ SP  - 143
274
+ VL  - 6
275
+ IS  - 1
276
+ AB  - Water is a ubiquitous solvent in chemistry and life.
277
+ It is therefore no surprise that the aqueous solubility of compounds has a key role in various domains,
278
+ including but not limited to drug discovery, paint, coating, and battery materials design.
279
+ Measurement and prediction of aqueous solubility is a complex and prevailing challenge in chemistry.
280
+ For the latter, different data-driven prediction models have recently been developed to augment the physics-based modeling approaches.
281
+ To construct accurate data-driven estimation models, it is essential that the underlying experimental calibration data used by these models is of high fidelity and quality.
282
+ Existing solubility datasets show variance in the chemical space of compounds covered, measurement methods, experimental conditions,
283
+ but also in the non-standard representations, size, and accessibility of data.
284
+ To address this problem, we generated a new database of compounds, AqSolDB, by merging a total of nine different aqueous solubility datasets,
285
+ curating the merged data, standardizing and validating the compound representation formats, marking with reliability labels, and providing 2D descriptors of compounds as a Supplementary Resource.
286
+ SN  - 2052-4463
287
+ UR  - https://doi.org/10.1038/s41597-019-0151-1
288
+ DO  - 10.1038/s41597-019-0151-1
289
+ ID  - Sorkun2019
290
+ ER  -
291
  ```
292