Add files using upload-large-folder tool

VerSe/20/dataset-03test/rawdata/sub-verse524/sub-verse524_dir-iso_ct.json

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+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "FLAT",
+    "KVP": "120",
+    "Manufacturer": "SIEMENS",
+    "ManufacturerModelName": "SOMATOM Definition AS+",
+    "PatientSex": "M",
+    "PixelSpacing": "0.82421875\\0.82421875",
+    "SliceThickness": "0.6"
+}

VerSe/20/dataset-03test/rawdata/sub-verse526/sub-verse526_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "YA",
+    "KVP": "120",
+    "Manufacturer": "Philips",
+    "ManufacturerModelName": "IQon - Spectral CT",
+    "PatientSex": "M",
+    "PixelSpacing": "0.728515625\\0.728515625",
+    "SliceThickness": "0.8"
+}

VerSe/20/dataset-03test/rawdata/sub-verse550/sub-verse550_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "B",
+    "KVP": "120",
+    "Manufacturer": "Philips",
+    "ManufacturerModelName": "iCT 256",
+    "PatientSex": "M",
+    "PixelSpacing": "0.78125\\0.78125",
+    "SliceThickness": "0.8"
+}

VerSe/20/dataset-03test/rawdata/sub-verse555/sub-verse555_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "B",
+    "KVP": "120",
+    "Manufacturer": "Philips",
+    "ManufacturerModelName": "iCT 256",
+    "PatientSex": "M",
+    "PixelSpacing": "0.896484375\\0.896484375",
+    "SliceThickness": "0.9"
+}

VerSe/20/dataset-03test/rawdata/sub-verse560/sub-verse560_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "FLAT",
+    "KVP": "120",
+    "Manufacturer": "SIEMENS",
+    "ManufacturerModelName": "Biograph128",
+    "PatientSex": "M",
+    "PixelSpacing": "0.669921875\\0.669921875",
+    "SliceThickness": "1"
+}

VerSe/20/dataset-03test/rawdata/sub-verse578/sub-verse578_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "0",
+    "KVP": "120",
+    "Manufacturer": "SIEMENS",
+    "ManufacturerModelName": "Sensation 64",
+    "PatientSex": "F",
+    "PixelSpacing": "0.625\\0.625",
+    "SliceThickness": "1"
+}

VerSe/20/dataset-03test/rawdata/sub-verse582/sub-verse582_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "FLAT",
+    "KVP": "120",
+    "Manufacturer": "SIEMENS",
+    "ManufacturerModelName": "SOMATOM Definition AS+",
+    "PatientSex": "M",
+    "PixelSpacing": "0.9765625\\0.9765625",
+    "SliceThickness": "0.6"
+}

VerSe/20/dataset-03test/rawdata/sub-verse597/sub-verse597_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "B",
+    "KVP": "120",
+    "Manufacturer": "Philips",
+    "ManufacturerModelName": "iCT 256",
+    "PatientSex": "M",
+    "PixelSpacing": "0.798828125\\0.798828125",
+    "SliceThickness": "0.9"
+}

VerSe/20/dataset-03test/rawdata/sub-verse599/sub-verse599_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "FLAT",
+    "KVP": "120",
+    "Manufacturer": "SIEMENS",
+    "ManufacturerModelName": "SOMATOM Definition AS+",
+    "PatientSex": "M",
+    "PixelSpacing": "0.822265625\\0.822265625",
+    "SliceThickness": "0.6"
+}

VerSe/20/dataset-03test/rawdata/sub-verse604/sub-verse604_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "B",
+    "KVP": "120",
+    "Manufacturer": "Philips",
+    "ManufacturerModelName": "IQon - Spectral CT",
+    "PatientSex": "F",
+    "PixelSpacing": "0.73046875\\0.73046875",
+    "SliceThickness": "0.9"
+}

VerSe/20/dataset-03test/rawdata/sub-verse613/sub-verse613_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "FLAT",
+    "KVP": "120",
+    "Manufacturer": "SIEMENS",
+    "ManufacturerModelName": "SOMATOM Definition AS+",
+    "PatientSex": "M",
+    "PixelSpacing": "0.451171875\\0.451171875",
+    "SliceThickness": "0.6"
+}

VerSe/20/dataset-03test/rawdata/sub-verse650/sub-verse650_dir-iso_ct.json

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+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "C",
+    "KVP": 120.0,
+    "PatientSex": "F",
+    "PixelSpacing": [
+        0.629627232,
+        0.629627232
+    ],
+    "SliceThickness": 2.0
+}

VerSe/20/dataset-03test/rawdata/sub-verse702/sub-verse702_dir-sag_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "KVP": 120.0,
+    "PatientSex": "M",
+    "PixelSpacing": [
+        0.805,
+        0.805
+    ],
+    "SliceThickness": 3.0
+}

VerSe/20/dataset-03test/rawdata/sub-verse704/sub-verse704_dir-iso_ct.json

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+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "LARGE  EC",
+    "KVP": "120",
+    "Manufacturer": "TOSHIBA",
+    "ManufacturerModelName": "Aquilion ONE",
+    "PatientSex": "M",
+    "PixelSpacing": "0.824\\0.824",
+    "SliceThickness": "0.5"
+}

VerSe/20/dataset-03test/rawdata/sub-verse708/sub-verse708_dir-iso_ct.json

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+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "LARGE",
+    "KVP": "120",
+    "Manufacturer": "TOSHIBA",
+    "ManufacturerModelName": "Aquilion PRIME",
+    "PatientSex": "F",
+    "PixelSpacing": "0.781\\0.781",
+    "SliceThickness": "1.0"
+}

VerSe/20/dataset-03test/rawdata/sub-verse766/sub-verse766_dir-ax_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "BODY FILTER",
+    "KVP": "120",
+    "Manufacturer": "GE MEDICAL SYSTEMS",
+    "ManufacturerModelName": "Optima CT660",
+    "PatientSex": "M",
+    "PixelSpacing": "0.703125\\0.703125",
+    "SliceThickness": "1.250000"
+}

VerSe/20/dataset-03test/rawdata/sub-verse803/sub-verse803_dir-iso_ct.json

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+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "WEDGE_3",
+    "KVP": "100",
+    "Manufacturer": "SIEMENS",
+    "ManufacturerModelName": "SOMATOM Definition Flash",
+    "PatientSex": "F",
+    "PixelSpacing": "0.705078125\\0.705078125",
+    "SliceThickness": "1"
+}

VerSe/20/dataset-03test/rawdata/sub-verse804/sub-verse804_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "FLAT",
+    "KVP": "140",
+    "Manufacturer": "SIEMENS",
+    "ManufacturerModelName": "SOMATOM Definition AS",
+    "PatientSex": "F",
+    "PixelSpacing": "0.8984375\\0.8984375",
+    "SliceThickness": "1"
+}

VerSe/20/dataset-03test/rawdata/sub-verse809/sub-verse809_dir-iso_ct.json

@@ -0,0 +1,10 @@
+{
+    "dataset": "VERSE  - DOI 10.17605/OSF.IO/T98FZ",
+    "FilterType": "FLAT",
+    "KVP": "120",
+    "Manufacturer": "SIEMENS",
+    "ManufacturerModelName": "Biograph40",
+    "PatientSex": "M",
+    "PixelSpacing": "0.9765625\\0.9765625",
+    "SliceThickness": "1"
+}

kits21/kits21/changelog.md

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+# Changelog
+
+This file is meant to keep track of which annotations were changed in each dataset version. Broadly, the *major* version will be incremented with any change to the postprocessing code that causes every region to be regenerated (starting at `v1.x.x`). The *minor* version will be incremented with the addition of new **imaging**, and the *patch* version will be incremented with new **annotations** for the existing imaging.
+
+## [2.2.3] - Removed Duplicate Instance
+
+The cyst region in 205 was an erroneous duplicate of a tumor
+
+## [2.2.2] - Official Dataset Freeze
+
+- Merged in work by Fabian and Dasha on example Docker submissions
+- Revisions to
+  - `case_00000`
+  - `case_00006`
+  - `case_00039`
+  - `case_00050`
+  - `case_00063`
+  - `case_00076`
+  - `case_00081`
+  - `case_00113`
+  - `case_00120`
+  - `case_00127`
+  - `case_00129`
+  - `case_00133`
+  - `case_00153`
+  - `case_00154`
+  - `case_00155`
+  - `case_00176`
+  - `case_00192`
+  - `case_00194`
+  - `case_00201`
+  - `case_00205`
+  - `case_00211`
+  - `case_00214`
+  - `case_00242`
+  - `case_00246`
+  - `case_00247`
+  - `case_00254`
+  - `case_00281`
+
+## [2.2.1] - July 1st, 2021: Training Set Release
+
+- Edits to nearly every case
+
+## [2.2] - July 1st, 2021
+
+- Code for evaluation of segmentations has been added. Have a look at kits21/evaluation/readme.md
+- Sampling of realistic segmentations from instance annotations
+- Code for computing the inter-rater disagreement between sampled segmentations
+
+## [2.1.1] - June 28, 2021
+
+- Complete revisions for
+  - `case_00167`
+  - `case_00170`
+  - `case_00179`
+  - `case_00181`
+  - `case_00182`
+  - `case_00186`
+  - `case_00187`
+  - cases 194-196
+  - cases 199-201
+  - cases 203-209
+  - `case_00211`
+  - `case_00212`
+  - cases 216-233
+  - `case_00235`
+  - `case_00237`
+  - `case_00238`
+  - cases 240-245
+  - `case_00247`
+  - `case_00249`
+  - `case_00255`
+  - cases 258-263
+  - `case_00266`
+  - `case_00267`
+  - `case_00269`
+  - `case_00270`
+  - `case_00272`
+  - cases 274-277
+  - `case_00279`
+  - `case_00280`
+  - cases 283-286
+  - `case_00288`
+  - `case_00290`
+  - `case_00293`
+  - `case_00295`
+  - `case_00299`
+- Incomplete revisions for
+  - `case_00168`
+  - `case_00169`
+  - cases 171-178
+  - `case_00180`
+  - `case_00184`
+  - `case_00185`
+  - cases 188-190
+  - `case_00193`
+  - cases 197-198
+  - `case_00202`
+  - `case_00210`
+  - `case_00213`
+  - `case_00214`
+  - `case_00234`
+  - `case_00236`
+  - `case_00239`
+  - `case_00246`
+  - `case_00248`
+  - `case_00278`
+  - `case_00281`
+  - `case_00282`
+  - `case_00287`
+  - `case_00289`
+  - `case_00291`
+  - `case_00292`
+  - `case_00294`
+  - `case_00296`
+  - `case_00297`
+- Crowd-workers completed incomplete revisions in cases 0 - 200
+  - cases 250-254
+  - `case_00256`
+  - `case_00257`
+  - `case_00264`
+  - `case_00265`
+  - `case_00268`
+  - `case_00271`
+  - `case_00273`
+  - `case_00278`
+  - `case_00281`
+  - `case_00282`
+  - `case_00287`
+  - `case_00289`
+  - `case_00291`
+  - `case_00292`
+  - `case_00294`
+  - `case_00296`
+  - `case_00297`
+- Crowd-workers completed incomplete revisions in cases 0 - 200
+
+## [2.1.0]- June 28, 2021
+
+- Restructured the project as a python package for easier import
+
+## [2.0.6] - June 26, 2021
+
+- Full Annotations for cases 277 - 299
+- Complete revisions for
+  - cases 146-148
+  - cases 151-155
+  - cases 159-165`
+- Incomplete revisions for
+  - `case_00149`
+  - `case_00151`
+  - `case_00157`
+  - `case_00158`
+  - `case_00166`
+
+## [2.0.5] - June 25, 2021
+
+- Full Annotations for cases 250 - 276
+- Complete revisions for
+  - `case_00082`
+  - `case_00083`
+  - cases 85-88
+  - `case_00090`
+  - `case_00092`
+  - `case_00094`
+  - `case_00095`
+  - `case_00096`
+  - `case_00099`
+  - cases 101-107
+  - `case_00109`
+  - `case_00110`
+  - cases 112-116
+  - cases 120-122
+  - `case_00125`
+  - `case_00126`
+  - `case_00130`
+  - `case_00131`
+  - `case_00134`
+  - `case_00136`
+  - `case_00138`
+  - `case_00144`
+- Incomplete revisions for
+  - `case_00084`
+  - `case_00091`
+  - `case_00093`
+  - `case_00097`
+  - `case_00098`
+  - `case_00100`
+  - `case_00108`
+  - `case_00111`
+  - cases 117-119
+  - `case_00123`
+  - `case_00124`
+  - `case_00127`
+  - `case_00129`
+  - `case_00132`
+  - `case_00135`
+  - `case_00137`
+  - cases 139-143
+  - `case_00145`
+
+## [2.0.4] - June 24, 2021
+
+- Full annotations for cases 226 - 249
+- Complete revisions for
+  - `case_00041`
+  - `case_00075`
+  - `case_00076`
+  - `case_00077`
+  - `case_00078`
+  - `case_00079`
+  - `case_00080`
+  - `case_00081`
+
+## [2.0.3] - June 23, 2021
+
+- Full annotations for cases 200 - 225
+- Incomplete revisions for
+  - `case_00017`
+  - `case_00019`
+  - `case_00021`
+  - `case_00023`
+  - `case_00026`
+  - `case_00033`
+  - `case_00051`
+  - `case_00056`
+  - `case_00057`
+  - `case_00058`
+  - `case_00060`
+  - `case_00065`
+  - `case_00066`
+  - `case_00068`
+  - `case_00071`
+  - `case_00150`
+- Complete revisions for
+  - `case_00016`
+  - `case_00018`
+  - `case_00020`
+  - `case_00022`
+  - `case_00024`
+  - `case_00025`
+  - `case_00027`
+  - `case_00028`
+  - `case_00029`
+  - `case_00030`
+  - `case_00031`
+  - `case_00032`
+  - `case_00034`
+  - `case_00035`
+  - `case_00036`
+  - `case_00038`
+  - `case_00039`
+  - `case_00042`
+  - `case_00050`
+  - `case_00052`
+  - `case_00053`
+  - `case_00054`
+  - `case_00055`
+  - `case_00059`
+  - `case_00061`
+  - `case_00062`
+  - `case_00064`
+  - `case_00067`
+  - `case_00069`
+  - `case_00070`
+  - `case_00072`
+  - `case_00073`
+  - `case_00074`
+
+## [2.0.2] - June 22, 2021
+
+- Full annotations for cases 150 - 199
+- Incomplete revisions for
+  - `case_00000`
+  - `case_00001`
+  - `case_00015`
+  - `case_00100`
+- Complete revisions for
+  - cases 2 - 14
+  - `case_00101`
+  - `case_00102`
+
+## [2.0.1] - June 18, 2021
+
+- Full annotations for cases 93 - 149
+
+## [2.0.0] - June 17, 2021
+
+- Changed import and aggregation code to ignore ureter, artery, and vein regions
+- Deleted existing ureter, artery, and vein instances that were segmented
+- New annotations for cases 50 - 92
+
+## [1.0.3] - May 21, 2021
+
+- Full annotations for
+  - `case_00036`
+  - `case_00037`
+  - `case_00038`
+  - `case_00039`
+  - `case_00041`
+  - `case_00042`
+  - `case_00044`
+  - `case_00046`
+- Added cleanup function to import script which deletes unused save files
+
+## [1.0.2] - May 7, 2021
+
+- Full annotations for
+  - `case_00034`
+  - `case_00035`
+
+## [1.0.1] - May 6, 2021
+
+- Full annotations for
+  - `case_00030`
+  - `case_00031`
+  - `case_00032`
+
+## [1.0.0] - May 5, 2021
+
+- Full annotations for
+  - `case_00008`
+  - `case_00025`
+  - `case_00026`
+  - `case_00027`
+  - `case_00028`
+  - `case_00029`
+- Two new methods for aggregation ("and" and "majority voting") and their associated files
+
+## [0.0.8] - April 29, 2021
+
+- Full annotations for
+  - `case_00005`
+  - `case_00023`
+  - `case_00024`
+
+## [0.0.7] - April 15, 2021
+
+- Full annotations for
+  - `case_00020`
+  - `case_00021`
+  - `case_00022`
+
+## [0.0.6] - April 14, 2021
+
+- Full annotations for
+  - `case_00017`
+  - `case_00018`
+  - `case_00019`
+
+## [0.0.5] - April 13, 2021
+
+- Full annotations for
+  - `case_00014`
+  - `case_00015` sans one artery segmentation -- will include next time
+  - `case_00016`
+
+## [0.0.4] - April 12, 2021
+
+- Full annotations for
+  - `case_00011` - sans one kidney annotation -- will get on next round
+  - `case_00012`
+  - `case_00013`
+
+## [0.0.3] - April 9, 2021
+
+- Full annotations for
+  - `case_00006`
+  - `case_00007`
+  - `case_00009`
+  - `case_00010`
+
+## [0.0.2] - April 8, 2021
+
+- Full annotations for:
+  - `case_00002`
+  - `case_00003`
+  - `case_00004`
+- Added `pull_request_template.md`
+
+## [0.0.1] - April 7, 2021
+
+- Includes all imaging from the KiTS19 Challenge
+- Preliminary postprocessing and aggregation -- still subject to change
+- Full annotations for:
+  - `case_00000`
+  - `case_00001`
+  - `case_00006`
+- Partial annotations for
+  - `case_00002`