use pie-documents 0.1.0

from https://github.com/ArneBinder/pie-datasets/pull/209 (and https://github.com/ArneBinder/pie-datasets/pull/211), also see https://github.com/ArneBinder/pie-documents/releases/tag/v0.1.0

README.md

@@ -31,15 +31,15 @@ and the following annotation layers:
 - `name` (str): entity string between span start and end
 - `type` (str): entity type classifying the expression
 
-See [here](https://github.com/ArneBinder/pie-modules/blob/main/src/pie_modules/annotations.py) and
-[here](https://github.com/ArneBinder/pie-modules/blob/main/src/pie_modules/annotations.py) for the annotation
+See [here](https://github.com/ArneBinder/pie-documents/blob/main/src/pie_documents/annotations.py) and
+[here](https://github.com/ArneBinder/pie-documents/blob/main/src/pie_documents/annotations.py) for the annotation
 type definitions.
 
 ## Document Converters
 
 The dataset provides predefined document converters for the following target document types:
 
-- `pie_modules.documents.TextDocumentWithLabeledSpansAndBinaryRelations`:
+- `pie_documents.documents.TextDocumentWithLabeledSpansAndBinaryRelations`:
 
   - **labeled_spans**: There are always two labeled spans in each sentence.
     The first one refers to the gene, while the second one refers to the cancer.
@@ -51,6 +51,6 @@ The dataset provides predefined document converters for the following target doc
     no binary relation is added to the document. In total to 303 of the 821 examples,
     there is no rule is applicable (cf [here](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-323/tables/7)).
 
-See [here](https://github.com/ArneBinder/pie-modules/blob/main/src/pie_modules/documents.py) and
-[here](https://github.com/ArneBinder/pie-modules/blob/main/src/pie_modules/documents.py) for the document type
+See [here](https://github.com/ArneBinder/pie-documents/blob/main/src/pie_documents/documents.py) and
+[here](https://github.com/ArneBinder/pie-documents/blob/main/src/pie_documents/documents.py) for the document type
 definitions.

comagc.py

@@ -4,8 +4,8 @@ from typing import Any, Dict, Optional
 
 import datasets
 from pie_core import AnnotationLayer, Document, annotation_field
-from pie_modules.annotations import BinaryRelation, LabeledSpan, Span
-from pie_modules.documents import TextDocumentWithLabeledSpansAndBinaryRelations
+from pie_documents.annotations import BinaryRelation, LabeledSpan, Span
+from pie_documents.documents import TextDocumentWithLabeledSpansAndBinaryRelations
 
 from pie_datasets import ArrowBasedBuilder
 

requirements.txt

@@ -1,2 +1,2 @@
 pie-datasets>=0.10.11,<0.12.0
-pie-modules>=0.15.9,<0.16.0
+pie-documents>=0.1.0,<0.2.0