Datasets:

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theislab

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Prophet

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Theis Lab 10

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 28 new columns ({'DepMap_ID', 'Cellosaurus_NCIt_id', 'sample_collection_site', 'model_manipulation_details', 'cell_line_name', 'lineage_subtype', 'parent_depmap_id', 'patient_id', 'stripped_cell_line_name', 'primary_disease', 'WTSI_Master_Cell_ID', 'CCLE_Name', 'age', 'Subtype', 'Cellosaurus_issues', 'sex', 'default_growth_pattern', 'primary_or_metastasis', 'Cellosaurus_NCIt_disease', 'lineage_sub_subtype', 'depmap_public_comments', 'COSMICID', 'lineage', 'RRID', 'alias', 'Sanger_Model_ID', 'model_manipulation', 'lineage_molecular_subtype'}) and 12 missing columns ({'iv1', 'main_target', 'index', 'type', 'focus_scaffold', 'first_letter', 'focus_leiden', 'leiden', 'moa', 'target', 'scaffold', 'smiles'}).

This happened while the csv dataset builder was generating data using

hf://datasets/theislab/Prophet/custom_splits_info/sample_info.csv (at revision 5e0b5c46231e4f0cb3122d8888cf0116804cbe94)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 644, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              DepMap_ID: string
              cell_line_name: string
              stripped_cell_line_name: string
              CCLE_Name: string
              alias: string
              COSMICID: double
              sex: string
              source: string
              RRID: string
              WTSI_Master_Cell_ID: double
              sample_collection_site: string
              primary_or_metastasis: string
              primary_disease: string
              Subtype: string
              age: string
              Sanger_Model_ID: string
              depmap_public_comments: string
              lineage: string
              lineage_subtype: string
              lineage_sub_subtype: string
              lineage_molecular_subtype: string
              default_growth_pattern: string
              model_manipulation: string
              model_manipulation_details: string
              patient_id: string
              parent_depmap_id: string
              Cellosaurus_NCIt_disease: string
              Cellosaurus_NCIt_id: string
              Cellosaurus_issues: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 4012
              to
              {'index': Value('string'), 'type': Value('string'), 'source': Value('string'), 'smiles': Value('string'), 'iv1': Value('string'), 'moa': Value('string'), 'target': Value('string'), 'first_letter': Value('string'), 'main_target': Value('string'), 'scaffold': Value('string'), 'focus_scaffold': Value('string'), 'leiden': Value('int64'), 'focus_leiden': Value('float64')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1451, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 994, in stream_convert_to_parquet
                  builder._prepare_split(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 28 new columns ({'DepMap_ID', 'Cellosaurus_NCIt_id', 'sample_collection_site', 'model_manipulation_details', 'cell_line_name', 'lineage_subtype', 'parent_depmap_id', 'patient_id', 'stripped_cell_line_name', 'primary_disease', 'WTSI_Master_Cell_ID', 'CCLE_Name', 'age', 'Subtype', 'Cellosaurus_issues', 'sex', 'default_growth_pattern', 'primary_or_metastasis', 'Cellosaurus_NCIt_disease', 'lineage_sub_subtype', 'depmap_public_comments', 'COSMICID', 'lineage', 'RRID', 'alias', 'Sanger_Model_ID', 'model_manipulation', 'lineage_molecular_subtype'}) and 12 missing columns ({'iv1', 'main_target', 'index', 'type', 'focus_scaffold', 'first_letter', 'focus_leiden', 'leiden', 'moa', 'target', 'scaffold', 'smiles'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/theislab/Prophet/custom_splits_info/sample_info.csv (at revision 5e0b5c46231e4f0cb3122d8888cf0116804cbe94)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)