study_ID
stringlengths 6
18
| platform
stringclasses 3
values | platform_detail
stringlengths 36
108
| study_type
stringclasses 3
values | pathogen
stringclasses 8
values | vaccine
stringlengths 4
31
⌀ | tissue
stringclasses 5
values | raw_data
stringclasses 2
values | antibody
stringclasses 2
values | num_subjects
int64 5
271
| num_observations
int64 12
880
| num_cells
float64 49.8k
647k
⌀ | meta_variable_list
stringlengths 20
254
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|
E_MTAB_12993_nose | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | inoculation | SARS-CoV-2 | null | nasal swab | no | no | 19 | 96 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;study_group;sex;age |
E_MTAB_12993_blood | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | inoculation | SARS-CoV-2 | null | whole blood | no | no | 35 | 374 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;study_group;sex;age |
GSE11348 | microarray | GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | inoculation | HRV | null | nasal swab | yes | no | 31 | 93 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;study_group;sex;age;sham |
GSE61754 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | inoculation | H3N2 | null | whole blood | yes | no | 22 | 88 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;symptom_group_original;study_group;seroconversion;viral_shedding |
GSE90732 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | inoculation | H1N1 | null | whole blood | yes | no | 21 | 108 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;Total_DSS;study_group;sex;age |
GSE155237 | RNA-seq | GPL16791; Illumina HiSeq 2500 (Homo sapiens) | inoculation | RSV | null | nasal swab | yes | no | 40 | 78 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint;infection_group;symptom_group |
GSE73072_H1N1_DEE4 | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | H1N1 | null | whole blood | yes | no | 19 | 386 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE73072_H1N1_DEE3 | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | H1N1 | null | whole blood | yes | no | 24 | 477 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE73072_H3N2_DEE2 | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | H3N2 | null | whole blood | yes | no | 17 | 355 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE73072_H3N2_DEE5 | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | H3N2 | null | whole blood | yes | no | 21 | 482 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE73072_HRV_DUKE | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | HRV | null | whole blood | yes | no | 27 | 471 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;sham |
GSE73072_HRV_UVA | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | HRV | null | whole blood | yes | no | 20 | 295 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE73072_RSV_DEE1 | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | RSV | null | whole blood | yes | no | 20 | 420 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE68310 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | mixed exposure | influenza_A_virus; influenza_B_virus; enterovirus; human_coronavirus; human_rhinovirus; respiratory_syncytial_virus | null | whole blood | yes | yes | 133 | 880 | null | geo_accession;ID;study_ID;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;sex;age;Medications;Duration_of_symptoms |
GSE194378 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | mixed exposure | influenza | Influenza QIV | whole blood | yes | yes | 75 | 412 | null | geo_accession;ID;study_ID;tissue;platform;title;timepoint;MFC;responder;study_group;vaccine;sex;age;ethnicity;race;symptom_group_previous_covid;side_effect;Duration_of_symptoms;days.since.covid.19.diagnosis;influenza.vaccination.count..previous.10.years. |
GSE117580 | RNA-seq | GPL20301; Illumina HiSeq 4000 (Homo sapiens) | mixed exposure | influenza | Influenza LAIV/TIV | nasal swab | yes | no | 35 | 96 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine |
GSE74811 | microarray | GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 28 | 83 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;vaccine |
GSE74813 | microarray | GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 63 | 286 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;vaccine;sex;age;race |
GSE74815 | microarray | GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 26 | 75 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;vaccine |
GSE74816 | microarray | GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 72 | 177 | null | geo_accession;ID;tissue;pathogen;title;timepoint;MFC;responder;study_group;Enrollment_year;sex;age |
GSE48023 | microarray | GPL10558; Illumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 110 | 417 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age |
GSE48018 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 116 | 431 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age |
GSE41080 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 91 | 91 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;BMI |
GSE59743 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 30 | 120 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;responder_original;vaccine;age_group;immport_expsamp_acc |
GSE59654 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 39 | 156 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;responder_original;vaccine;age_group;immport_expsamp_acc |
GSE101709 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 26 | 98 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;age_group;immport_expsamp_acc |
GSE59635 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 19 | 72 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;responder_original;vaccine;age_group;immport_expsamp_acc |
GSE101710 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 20 | 79 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;age_group;immport_expsamp_acc |
GSE47353 | microarray | GPL6244; [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 63 | 292 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity |
GSE190001_PRIME | RNA-seq | GPL30296; Illumina Hiseq 4000 (Homo sapiens) | vaccine | SARS-CoV-2 | Pfizer BioNTech/ Moderna | whole blood | yes | yes | 23 | 213 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;vaccine_dose;sex;age;ethnicity;PreviousCOVID19;UnderlyingDisease;turbo_reatment;Medications;side_effect |
GSE190001_BOOST | RNA-seq | GPL30296; Illumina Hiseq 4000 (Homo sapiens) | vaccine | SARS-CoV-2 | Pfizer BioNTech/ Moderna | whole blood | yes | yes | 23 | 226 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;vaccine_dose;sex;age;ethnicity;PreviousCOVID19;UnderlyingDisease;turbo_reatment;Medications;side_effect |
SDY311 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 63 | 73 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;Expsample.Accession;ethnicity;race |
SDY112 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 89 | 89 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity;race |
SDY315 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 71 | 71 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity;race |
GSE207750 | RNA-seq | GPL24676; llumina NovaSeq 6000 (Homo sapiens) | vaccine | influenza | Influenza TIV | whole blood | no | yes | 271 | 271 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;MFC;responder;study_group;vaccine;sex;age;race_ethnicity;BMI;Vaccinated.in.prior.3.seasons;Height_cm;Weight_kg;Current.smoker;Prior.smoker;Sleep.apnea |
GSE246525 | RNA-seq | GPL28038; DNBSEQ-G400 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | whole blood | yes | yes | 10 | 38 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;responder_original;vaccine;sex |
GSE201533 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2 | PBMC | yes | yes | 43 | 161 | null | geo_accession;ID;study_ID;tissue;platform;title;timepoint;vaccine_dose;sex;age;BMI |
GSE190747 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC | yes | yes | 30 | 115 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;BMI;UnderlyingDisease;side_effect |
GSE199750 | RNA-seq | GPL28038; DNBSEQ-G400 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2 | whole blood | yes | yes | 86 | 260 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint_group;MFC;responder;vaccine;sex;age |
GSE220682 | RNA-seq | GPL18573; Illumina NextSeq 500 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC | yes | no | 203 | 705 | null | geo_accession;study_ID;tissue;platform;pathogen;batch;title;timepoint;vaccine |
GSE228839 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/MenACWY | whole blood | no | no | 100 | 170 | null | geo_accession;ID;study_ID;tissue;platform;title;timepoint_group;study_group;vaccine;sex;age |
GSE276544 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2/MVA/mRNA-1273 | whole blood | yes | no | 43 | 305 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint_group;vaccine |
GSE209985 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC | yes | no | 32 | 188 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint;study_group;vaccine;vaccine_dose;sex;age;PreviousCOVID19;diabetes |
GSE247401 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2/mRNA-1273 | whole blood | yes | no | 17 | 50 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint;vaccine;sex |
GSE265975 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC | yes | no | 29 | 100 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;timepoint_group;study_group;vaccine |
GSE169159 | RNA-seq | GPL15520; Illumina MiSeq (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | whole blood | yes | yes | 32 | 185 | null | geo_accession;ID;study_ID;tissue;platform;title;timepoint;MFC;responder;vaccine;vaccine_dose;sex;age |
GSE102012 | microarray | GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate | vaccine | influenza | H5N1 | whole blood | yes | no | 50 | 384 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine |
GSE217770 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | influenza | Influenza LAIV | whole blood | yes | no | 53 | 371 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;sex |
GSE230494 | RNA-seq | GPL18573; Illumina NextSeq 500 (Homo sapiens) | vaccine | influenza | Influenza LAIV | nasal swab | yes | no | 39 | 60 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine |
GSE29614 | microarray | GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 9 | 27 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine |
GSE29615 | microarray | GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | vaccine | influenza | Influenza LAIV | PBMC | yes | yes | 28 | 83 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine |
GSE29617 | microarray | GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 28 | 80 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine |
GSE52005 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza LAIV/TIV | whole blood | yes | no | 38 | 140 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;sex;age;race |
GSE48762 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza/pneumococcal | Influenza TIV/Saline/Pneumovax | whole blood | yes | yes | 34 | 621 | null | geo_accession;ID;study_ID;tissue;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;immport_expsamp_acc;ethnicity;race |
GSE107990 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | no | 172 | 671 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;sex;age;ethnicity |
GSE45735 | RNA-seq | GPL10999; Illumina Genome Analyzer IIx (Homo sapiens) | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 5 | 54 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity;race |
GSE281864 | RNA-seq | GPL20301; Illumina HiSeq 4000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | whole blood | yes | no | 17 | 193 | null | geo_accession;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;vaccine_dose |
GSE201642 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2 | PBMC | yes | yes | 15 | 48 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;study_group;vaccine;sex;age;UnderlyingDisease |
GSE250023 | RNA-seq | GPL28038; DNBSEQ-G400 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | whole blood | yes | yes | 18 | 75 | null | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;responder_original;vaccine;sex;UnderlyingDisease |
challenge_covid19 | scRNA-seq | Illumina NovaSeq 6000 (Homo sapiens) | inoculation | SARS-CoV-2 | null | PBMC | no | yes | 16 | 144 | 606,074 | List in the h5ad obs |
EMTAB10026 | scRNA-seq | Illumina NovaSeq 6000 (Homo sapiens) | inoculation | SARS-CoV-2 | null | PBMC | no | no | 130 | 143 | 647,366 | List in the h5ad obs |
eskd_covid19 | scRNA-seq | Illumina NovaSeq 6000 (Homo sapiens) | mixed exposure | SARS-CoV-2 | null | nasal swab/PBMC | no | no | 61 | 187 | 588,389 | List in the h5ad obs |
GSE201534 | scRNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2 | PBMC | no | no | 6 | 12 | 87,160 | List in the h5ad obs |
GSE247917 | scRNA-seq | GPL18573; Illumina NextSeq 500 (Homo sapiens)/GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC | no | no | 14 | 54 | 195,489 | List in the h5ad obs |
GSE195673 | scRNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC/Lymph Node | no | no | 8 | 56 | 383,635 | List in the h5ad obs |
GSE246937 | scRNA-seq | GPL21697; NextSeq 550 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b | whole blood | no | yes | 10 | 25 | 49,829 | List in the h5ad obs |
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