atgctg commited on
Commit
40c5302
·
unverified ·
1 Parent(s): 5b8e87d

feat: add smiles property

Browse files
Files changed (1) hide show
  1. pubchem_selfies.py +6 -4
pubchem_selfies.py CHANGED
@@ -14,8 +14,6 @@
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  # TODO: Address all TODOs and remove all explanatory comments
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  """TODO: File Description"""
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-
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- import csv
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  import json
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  import os
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@@ -75,8 +73,9 @@ _HOMEPAGE = "https://pubchem.ncbi.nlm.nih.gov/"
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  # TODO: Add the licence for the dataset here if you can find it
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  # _LICENSE = ""
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- # _BASE_URL = "https://huggingface.co/datasets/zpn/pubchem-selfies/resolve/refs%2Fpr%2F2"
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- _URLS = [] # TODO: define urls
 
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  class PubchemSelfies(datasets.GeneratorBasedBuilder):
@@ -161,5 +160,8 @@ class PubchemSelfies(datasets.GeneratorBasedBuilder):
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  properties = data["molecules"][0]["properties"]
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  yield key, {
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  "PUBCHEM_COMPOUND_CID": properties["PUBCHEM_COMPOUND_CID"],
 
 
 
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  "CAN_SELFIES": properties["CAN_SELFIES"],
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  }
 
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  # TODO: Address all TODOs and remove all explanatory comments
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  """TODO: File Description"""
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  import json
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  import os
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  # TODO: Add the licence for the dataset here if you can find it
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  # _LICENSE = ""
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+ # TODO: define urls
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+ # example: https://huggingface.co/datasets/zpn/pubchem-selfies/blob/refs%2Fpr%2F2/data/Compound_000000001_000500000/Compound_000000001_000500000_SELFIES.jsonl.tar.gz
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+ _URLS = [""]
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  class PubchemSelfies(datasets.GeneratorBasedBuilder):
 
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  properties = data["molecules"][0]["properties"]
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  yield key, {
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  "PUBCHEM_COMPOUND_CID": properties["PUBCHEM_COMPOUND_CID"],
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+ "PUBCHEM_OPENEYE_CAN_SMILES": properties[
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+ "PUBCHEM_OPENEYE_CAN_SMILES"
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+ ],
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  "CAN_SELFIES": properties["CAN_SELFIES"],
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  }