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README.md
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# EHRXDiff
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Model card for our paper: [Towards Predicting Temporal Changes in a Patient's Chest X-ray Images based on Electronic Health Records](https://arxiv.org/abs/2409.07012).
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We provide two versions of the **EHRXDiff** model:
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* **EHRXDiff** – trained without the null-based augmentation technique
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* **EHRXDiff<sub>w_null</sub>** – trained with the null-based augmentation technique.
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This card describes the **EHRXDiff** model.
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For implementation details, please refer to the [EHRXDiff repository](https://github.com/dek924/EHRXDiff).
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## Installation
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First, clone the repository and install the required packages:
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```
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git clone https://github.com/dek924/EHRXDiff.git
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pip install "pip<24.1"
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pip install torch==1.11.0+cu113 torchvision==0.12.0+cu113 torchaudio==0.11.0 --extra-index-url https://download.pytorch.org/whl/cu113
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pip install -r requirements.txt
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```
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## Loading the model
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You can load the model directly in Python:
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```python
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from cheff.ldm.models.diffusion.ddpm_tab import EHRXDiff
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model = EHRXDiff.from_pretrained("dek924/ehrxdiff")
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model.eval()
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```
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Alternatively, you can download the weights via the Hugging Face Hub:
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```python
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from huggingface_hub import hf_hub_download
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wt_path = hf_hub_download("dek924/ehrxdiff", "pytorch_model.bin")
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```
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and then run the evaluation script included in our github repository (`scripts/eval.py`):
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```
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python scripts/eval.py \
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--sdm_path=${CHECKPOINT_PATH}/pytorch_model.bin \
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--save_dir=${CHECKPOINT_PATH}/images/seed${RAND_SEED} \
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--img_meta_dir=${IMG_META_DIR} \ # Directory containing metadata for MIMIC-CXR-JPG
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--img_root_dir=${IMG_ROOT_DIR} \ # Directory containing preprocessed images
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--tab_root_dir=${TAB_ROOT_DIR} \ # Directory containing tabular data
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--seed=${RAND_SEED} \
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--batch_size=${BATCHSIZE}
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```
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