Update README.md

README.md

@@ -55,18 +55,25 @@ We sincerely thank the teams behind NT, DNABERT, and HyenaDNA for making their t
 
 We provide the following available models for use.
 
-- `taxonomy_nucleotide-transformer-v2-50m-multi-species`  
-- `taxonomy_DNABERT-2-117M`  
-- `taxonomy_hyenadna-large-1m-seqlen-hf`  
-- `amr_nucleotide-transformer-v2-50m-multi-species`  
-- `amr_DNABERT-2-117M`  
-- `amr_hyenadna-large-1m-seqlen-hf`  
-- `pathogenicity_nucleotide-transformer-v2-50m-multi-species`  
-- `pathogenicity_DNABERT-2-117M`  
-- `pathogenicity_hyenadna-large-1m-seqlen-hf`  
+- `taxonomy/DNABERT-2-117M-taxonomy`  
+- `taxonomy/hyenadna-large-1m-seqlen-hf-taxonomy`  
+- `taxonomy/nucleotide-transformer-v2-50m-multi-species-taxonomy`  
+- `amr/binary/hyenadna-small-32k-seqlen-hf`  
+- `amr/binary/nucleotide-transformer-v2-100m-multi-species`  
+- `amr/multiclass/DNABERT-S`  
+- `amr/multiclass/hyenadna-medium-450k-seqlen-hf`  
+- `amr/multiclass/nucleotide-transformer-v2-250m-multi-species`  
+- `pathogenicity/hyenadna-small-32k-seqlen-hf-DeePaC-fungal`  
+- `pathogenicity/hyenadna-small-32k-seqlen-hf-DeePaC-viral`  
+- `pathogenicity/hyenadna-small-32k-seqlen-hf-DeepSim-bacterial`  
+- `pathogenicity/hyenadna-small-32k-seqlen-hf-DeepSim-viral`  
+- `pathogenicity/nucleotide-transformer-v2-50m-multi-species-DeePaC-fungal`  
+- `pathogenicity/nucleotide-transformer-v2-50m-multi-species-DeePaC-viral`  
+- `pathogenicity/nucleotide-transformer-v2-50m-multi-species-DeepSim-bacterial`  
+- `pathogenicity/nucleotide-transformer-v2-50m-multi-species-DeepSim-viral`  
 
 To use these models, download the directories available here. 
-You must also follow the installation instructions available at [code](github.com/jhuapl-bio/microbert).
+You must also follow the installation instructions available at our [GitHub Repo](github.com/jhuapl-bio/microbert).
 There are two available modes of operation: setup from source code and setup from Docker.
 Given that you have followed the setup instructions from source code and have downloaded the model directories here, here is sample code to run inference: