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OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| pancreatic acinar cell | 545 | 0.97 | 0.96 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |\n| pancreatic ductal cell | 271 | 0.94 | 0.93 | 0.96 | 0.95 | 0.00 | 0.96 | 0.97 | 0.96 | 0.97 |\n| endothelial cell | 239 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |\n| macrophage | 163 | 0.94 | 0.88 | 0.93 | 0.93 | 0.00 | 0.90 | 0.95 | 0.93 | 0.95 |\n| CD8-positive, alpha-beta T cell | 59 | 0.98 | 0.96 | 0.98 | 0.95 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |\n| pancreatic stellate cell | 42 | 0.96 | 0.95 | 0.98 | 0.96 | 0.00 | 0.97 | 0.98 | 0.98 | 0.99 |\n| classical monocyte | 38 | 0.76 | 0.00 | 0.75 | 0.78 | 0.00 | 0.83 | 0.83 | 0.80 | 0.80 |\n| fibroblast | 17 | 0.97 | 1.00 | 0.97 | 0.97 | 0.00 | 1.00 | 1.00 | 0.94 | 1.00 |\n| type B pancreatic cell | 14 | 1.00 | 0.96 | 1.00 | 0.93 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| B cell | 2 | 1.00 | 1.00 | 0.80 | 0.80 | 0.00 | 0.80 | 1.00 | 0.80 | 1.00 |\n| natural killer cell | 4 | 0.89 | 0.86 | 1.00 | 1.00 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |\n| pancreatic A cell | 7 | 1.00 | 0.44 | 0.92 | 0.83 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| CD4-positive, alpha-beta T cell | 4 | 0.00 | 0.00 | 0.00 | 0.33 | 0.00 | 0.55 | 0.40 | 0.40 | 0.00 |\n| monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasma cell | 3 | 0.86 | 1.00 | 1.00 | 0.86 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |\n| pancreatic D cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| neutrophil | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| pancreatic PP cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| pancreatic acinar cell | 4937 | 0.97 | 0.87 | 0.98 | 0.99 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| pancreatic ductal cell | 2449 | 0.95 | 0.80 | 0.97 | 0.97 | 0.00 | 0.96 | 0.97 | 0.97 | 0.97 |\n| endothelial cell | 2084 | 0.99 | 0.99 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| macrophage | 1426 | 0.93 | 0.87 | 0.95 | 0.94 | 0.00 | 0.92 | 0.96 | 0.96 | 0.96 |\n| CD8-positive, alpha-beta T cell | 559 | 0.97 | 0.95 | 0.98 | 0.96 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |\n| pancreatic stellate cell | 395 | 0.96 | 0.93 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| classical monocyte | 352 | 0.80 | 0.00 | 0.86 | 0.80 | 0.00 | 0.88 | 0.90 | 0.90 | 0.89 |\n| fibroblast | 177 | 0.94 | 0.93 | 0.97 | 0.97 | 0.00 | 1.00 | 0.99 | 0.99 | 0.99 |\n| type B pancreatic cell | 88 | 0.94 | 0.49 | 0.96 | 0.91 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |\n| B cell | 51 | 0.97 | 0.99 | 0.95 | 0.95 | 0.00 | 0.97 | 0.99 | 0.95 | 1.00 |\n| natural killer cell | 46 | 0.92 | 0.69 | 0.94 | 0.73 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |\n| pancreatic A cell | 41 | 0.93 | 0.00 | 0.94 | 0.83 | 0.00 | 0.99 | 1.00 | 1.00 | 0.96 |\n| intermediate monocyte | 42 | 0.00 | 0.00 | 0.34 | 0.16 | 0.00 | 0.46 | 0.82 | 0.91 | 0.85 |\n| CD4-positive, alpha-beta T cell | 33 | 0.00 | 0.00 | 0.52 | 0.34 | 0.00 | 0.70 | 1.00 | 0.99 | 0.73 |\n| monocyte | 13 | 0.00 | 0.00 | 0.12 | 0.35 | 0.00 | 0.46 | 0.93 | 0.96 | 0.35 |\n| plasma cell | 10 | 0.53 | 0.50 | 0.95 | 0.89 | 0.00 | 0.80 | 1.00 | 1.00 | 0.95 |\n| pancreatic D cell | 9 | 0.00 | 0.00 | 0.43 | 0.33 | 0.00 | 0.94 | 1.00 | 1.00 | 0.88 |\n| neutrophil | 6 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.92 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 2 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| mast cell | 2 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| pancreatic PP cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.44 | 1.00 | 1.00 | 0.67 |\n| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |\n| non-classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.12 | 1.00 | 1.00 | 0.00 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| pancreatic acinar cell | 551 | 0.96 | 0.96 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |\n| pancreatic ductal cell | 262 | 0.93 | 0.94 | 0.96 | 0.95 | 0.00 | 0.95 | 0.96 | 0.95 | 0.97 |\n| endothelial cell | 241 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| macrophage | 161 | 0.92 | 0.88 | 0.93 | 0.92 | 0.00 | 0.92 | 0.96 | 0.93 | 0.95 |\n| CD8-positive, alpha-beta T cell | 59 | 0.98 | 0.97 | 0.97 | 0.98 | 0.00 | 0.99 | 0.99 | 0.98 | 0.98 |\n| pancreatic stellate cell | 43 | 0.97 | 0.95 | 0.98 | 0.96 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |\n| classical monocyte | 37 | 0.72 | 0.00 | 0.78 | 0.71 | 0.00 | 0.81 | 0.85 | 0.78 | 0.80 |\n| fibroblast | 16 | 0.97 | 1.00 | 1.00 | 0.97 | 0.00 | 1.00 | 1.00 | 0.97 | 1.00 |\n| type B pancreatic cell | 15 | 1.00 | 0.97 | 1.00 | 0.97 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| B cell | 6 | 1.00 | 1.00 | 0.92 | 0.92 | 0.00 | 0.86 | 1.00 | 0.92 | 1.00 |\n| natural killer cell | 3 | 0.86 | 0.67 | 0.86 | 0.67 | 0.00 | 1.00 | 1.00 | 1.00 | 0.86 |\n| pancreatic A cell | 6 | 1.00 | 0.80 | 1.00 | 0.92 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| CD4-positive, alpha-beta T cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 0.67 | 0.40 | 0.40 |\n| monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasma cell | 3 | 0.75 | 1.00 | 1.00 | 1.00 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |\n| pancreatic D cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| neutrophil | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| pancreatic PP cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| pancreatic acinar cell | 4931 | 0.97 | 0.91 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| pancreatic ductal cell | 2458 | 0.95 | 0.85 | 0.97 | 0.97 | 0.00 | 0.96 | 0.97 | 0.97 | 0.97 |\n| endothelial cell | 2082 | 0.99 | 0.99 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| macrophage | 1428 | 0.91 | 0.87 | 0.95 | 0.94 | 0.00 | 0.94 | 0.97 | 0.97 | 0.96 |\n| CD8-positive, alpha-beta T cell | 559 | 0.97 | 0.96 | 0.97 | 0.96 | 0.00 | 0.99 | 1.00 | 1.00 | 0.98 |\n| pancreatic stellate cell | 393 | 0.96 | 0.97 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| classical monocyte | 353 | 0.73 | 0.00 | 0.85 | 0.80 | 0.00 | 0.88 | 0.91 | 0.91 | 0.90 |\n| fibroblast | 178 | 0.94 | 0.93 | 0.97 | 0.97 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| type B pancreatic cell | 87 | 0.94 | 0.81 | 0.96 | 0.93 | 0.00 | 0.98 | 1.00 | 1.00 | 0.98 |\n| B cell | 47 | 0.97 | 0.91 | 0.96 | 0.97 | 0.00 | 0.94 | 1.00 | 0.99 | 1.00 |\n| natural killer cell | 47 | 0.95 | 0.93 | 0.95 | 0.81 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |\n| pancreatic A cell | 42 | 0.93 | 0.00 | 0.94 | 0.88 | 0.00 | 0.98 | 1.00 | 1.00 | 0.95 |\n| intermediate monocyte | 42 | 0.00 | 0.00 | 0.34 | 0.09 | 0.00 | 0.60 | 0.83 | 0.88 | 0.86 |\n| CD4-positive, alpha-beta T cell | 33 | 0.00 | 0.00 | 0.42 | 0.20 | 0.00 | 0.86 | 1.00 | 1.00 | 0.57 |\n| monocyte | 13 | 0.00 | 0.00 | 0.12 | 0.53 | 0.00 | 0.60 | 1.00 | 0.93 | 0.56 |\n| plasma cell | 10 | 0.56 | 0.33 | 0.90 | 0.89 | 0.00 | 0.77 | 1.00 | 1.00 | 1.00 |\n| pancreatic D cell | 9 | 0.00 | 0.00 | 0.43 | 0.00 | 0.00 | 0.78 | 1.00 | 1.00 | 0.80 |\n| neutrophil | 6 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.91 | 1.00 | 1.00 | 0.91 |\n| mature NK T cell | 2 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| mast cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.27 | 1.00 | 1.00 | 1.00 |\n| pancreatic PP cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 0.00 |\n| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |\n| non-classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 1.00 | 1.00 | 0.00 |"
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celltypist.pkl

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harmony_knn_classifier.joblib

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preprocessing.json

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