---
library_name: transformers
license: apache-2.0
base_model: ctheodoris/Geneformer
tags:
- generated_from_trainer
metrics:
- precision
- recall
- accuracy
model-index:
- name: Geneformer_ft_BioS2_1kbpHG19_DHSs_H3K27AC_one_shot
  results: []
---

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# Geneformer_ft_BioS2_1kbpHG19_DHSs_H3K27AC_one_shot

This model is a fine-tuned version of [ctheodoris/Geneformer](https://huggingface.co/ctheodoris/Geneformer) on the None dataset.
It achieves the following results on the evaluation set:
- Loss: 0.6915
- F1 Score: 0.6286
- Precision: 0.5789
- Recall: 0.6875
- Accuracy: 0.5593
- Auc: 0.6169
- Prc: 0.6568

## Model description

More information needed

## Intended uses & limitations

More information needed

## Training and evaluation data

More information needed

## Training procedure

### Training hyperparameters

The following hyperparameters were used during training:
- learning_rate: 1e-05
- train_batch_size: 8
- eval_batch_size: 8
- seed: 42
- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
- lr_scheduler_type: linear
- num_epochs: 20
- mixed_precision_training: Native AMP

### Training results

| Training Loss | Epoch   | Step | Validation Loss | F1 Score | Precision | Recall | Accuracy | Auc    | Prc    |
|:-------------:|:-------:|:----:|:---------------:|:--------:|:---------:|:------:|:--------:|:------:|:------:|
| 0.6848        | 8.3333  | 500  | 0.6786          | 0.6667   | 0.5510    | 0.8438 | 0.5424   | 0.6175 | 0.6452 |
| 0.6369        | 16.6667 | 1000 | 0.6915          | 0.6286   | 0.5789    | 0.6875 | 0.5593   | 0.6169 | 0.6568 |


### Framework versions

- Transformers 4.46.0.dev0
- Pytorch 2.4.1+cu121
- Datasets 2.18.0
- Tokenizers 0.20.0