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CIFM

Mask Generation

model_hub_mixin

pytorch_model_hub_mixin

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Yuning You commited on Feb 12

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@@ -13,7 +13,7 @@ tags:
 # CIFM: Cellular Interaction Foundation Model
 ## Overview
-This is the PyTorch implementation of the CIFM model -- an AI model that can simulate the activities within living tissues (AI virtual tissue).
 The current version of CIFM has 100M parameters and is trained on around 23M cells of spatial genomics. The signature functions of CIFM are:
 - **Embedding** of celllular microenvironments via ```embeddings = model.embed(adata)``` (the 1st Figure below panel D top);
 - **Inference/simulation** of cellular gene expressions within a certain microenvironment via ```expressions = model.predict_cells_at_locations(adata, target_locs)``` (the 1st Figure below panel D bottom, and the 2nd Figure below).

 # CIFM: Cellular Interaction Foundation Model
 ## Overview
+This is the PyTorch implementation of the CIFM model -- an AI foundation model that can simulate the activities within living tissues (AI virtual tissue).
 The current version of CIFM has 100M parameters and is trained on around 23M cells of spatial genomics. The signature functions of CIFM are:
 - **Embedding** of celllular microenvironments via ```embeddings = model.embed(adata)``` (the 1st Figure below panel D top);
 - **Inference/simulation** of cellular gene expressions within a certain microenvironment via ```expressions = model.predict_cells_at_locations(adata, target_locs)``` (the 1st Figure below panel D bottom, and the 2nd Figure below).