andrewt28/MolLM

MolLM: A Unified Language Model to Integrate Biomedical Text with 2D and 3D Molecular Representations

Model checkpoints for MolLM model.

The checkpoints for each downstream task can be found as follows (along with a summary of the contents of the top-level of each archive):

• GraphTextRetrieval
  • GraphTextRetrieval-model.zip
    • bert_pretrained
    • all_checkpoints
    • data
    • finetune_save
• MoleculeCaption
  • MoleculeCaption-model.zip
    • data
    • text2mol-data
    • M3_checkpoints
    • scibert
    • molt5-base-smiles2caption
    • molt5-small-smiles2caption
    • molt5-large-smiles2caption
• MoleculeEditing
  • MoleculeEditing-model.zip
    • bert_pretrained
    • checkpoints
    • embedding_data
    • model-epoch=507.ckpt
• MoleculeGeneration
  • MoleculeGeneration-model.zip
    • results
    • model-epoch=465.ckpt
    • qm9_64gnn_128-64lin_1-1mask_0d6noise_convlu1
• MoleculePrediction
  • MoleculePrediction-model.zip
    • all_checkpoints
    • dataset
    • model-epoch=507.ckpt