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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'corpus-id '}) and 1 missing columns ({'corpus-id'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ArkaAcharya/M3Retrieve/Pubmed/qrels/test_old.tsv (at revision 3ac24f4b38749b7e1ce7b8b8b6c3f4905b541cac)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
query-id: string
corpus-id : string
score: int64
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 606
to
{'query-id': Value(dtype='string', id=None), 'corpus-id': Value(dtype='string', id=None), 'score': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1415, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 991, in stream_convert_to_parquet
builder._prepare_split(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'corpus-id '}) and 1 missing columns ({'corpus-id'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ArkaAcharya/M3Retrieve/Pubmed/qrels/test_old.tsv (at revision 3ac24f4b38749b7e1ce7b8b8b6c3f4905b541cac)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
query-id
string | corpus-id
string | score
float64 |
|---|---|---|
Anatomy_And_Physio$$$Figure 28.7.1 | Anatomy_And_Physio$$$b5df4607-9b5a-4f82-a7fa-43f44c9c1b3c | 1 |
Anatomy_And_Physio$$$Figure 28.7.1 | Anatomy_And_Physio$$$c19f5d8a-e42b-418e-a133-c2b02e0b29c3 | 1 |
Anatomy_And_Physio$$$Figure 28.7.1 | Anatomy_And_Physio$$$43f30d40-14a3-41ab-bb9d-dcdc77559e8b | 1 |
Anatomy_And_Physio$$$Figure 28.7.1 | Anatomy_And_Physio$$$21c79aa3-993d-4eb2-a232-e9b0c80571cc | 1 |
Anatomy_And_Physio$$$Figure 28.7.2 | Anatomy_And_Physio$$$abe2371a-8804-4095-a1d0-6f4d2a842957 | 1 |
Anatomy_And_Physio$$$Figure 28.7.2 | Anatomy_And_Physio$$$bac86291-a46e-4c2a-9fcc-c7b0c712f258 | 1 |
Anatomy_And_Physio$$$Figure 28.7.2 | Anatomy_And_Physio$$$51263e42-cf11-4190-aa80-2f1c5093b28f | 1 |
Anatomy_And_Physio$$$Figure 28.7.2 | Anatomy_And_Physio$$$8d841c32-8ba8-40e3-84ef-0dc6a70af9c3 | 1 |
Anatomy_And_Physio$$$Figure 28.7.2 | Anatomy_And_Physio$$$f19b3056-ba03-4123-8bf8-f2f8194c1f5e | 1 |
Anatomy_And_Physio$$$Figure 28.7.2 | Anatomy_And_Physio$$$b43b1d00-3b76-4d0c-a532-32d2fe40f85d | 1 |
Anatomy_And_Physio$$$Figure 28.7.2 | Anatomy_And_Physio$$$05615087-feef-40e5-86c0-721ce7df2652 | 2 |
Anatomy_And_Physio$$$Figure 28.7.2 | Anatomy_And_Physio$$$38838748-0c01-4b2a-9227-a6d2a4b05b41 | 1 |
Anatomy_And_Physio$$$Figure 28.7.2 | Anatomy_And_Physio$$$36028006-d049-4631-8d10-7d96dfcfd616 | 1 |
Anatomy_And_Physio$$$Figure 28.7.2 | Anatomy_And_Physio$$$24fd5ef9-fabc-4a7f-b41c-1c7b4f4e1e44 | 1 |
Anatomy_And_Physio$$$Figure 28.7.2 | Anatomy_And_Physio$$$3b2ee4f8-486a-4a75-9537-d05a6201c824 | 1 |
Anatomy_And_Physio$$$Figure 28.7.3 | Anatomy_And_Physio$$$b145eb2c-6046-4e61-ace8-4d074e183e90 | 1 |
Anatomy_And_Physio$$$Figure 28.7.3 | Anatomy_And_Physio$$$76d2daa9-dc48-4c5d-b426-555273b44b4b | 2 |
Anatomy_And_Physio$$$Figure 28.7.3 | Anatomy_And_Physio$$$2b90d12e-5c73-4fbe-89f9-007e90205676 | 1 |
Anatomy_And_Physio$$$Figure 28.7.4 | Anatomy_And_Physio$$$abfbf054-48fa-4072-a009-cbd39c612a6d | 1 |
Anatomy_And_Physio$$$Figure 28.7.4 | Anatomy_And_Physio$$$50c5046a-cb4b-48d9-8597-83a941974534 | 1 |
Anatomy_And_Physio$$$Figure 28.7.4 | Anatomy_And_Physio$$$6c160eca-2723-4b6d-9ca2-2c29caf85ecf | 2 |
Anatomy_And_Physio$$$Figure 28.7.4 | Anatomy_And_Physio$$$b4eb50df-bd6e-455e-9bda-527c92e47eec | 1 |
Anatomy_And_Physio$$$Figure 28.7.5 | Anatomy_And_Physio$$$ddd57eb9-b6ef-4574-9bc9-18ae412e5506 | 1 |
Anatomy_And_Physio$$$Figure 28.7.5 | Anatomy_And_Physio$$$ce4ae496-4b8d-4fe7-b31b-e9258acd57bf | 2 |
Anatomy_And_Physio$$$Figure 28.7.5 | Anatomy_And_Physio$$$6ae46a9d-f4bb-464f-8f8c-3fef2b140f72 | 2 |
Anatomy_And_Physio$$$Figure 28.7.5 | Anatomy_And_Physio$$$90c45d87-3097-4fdd-b697-a5c018502449 | 1 |
Anatomy_And_Physio$$$Figure 28.7.5 | Anatomy_And_Physio$$$0b4a1161-bdc4-4fa0-8155-a5ccfb269daf | 1 |
Anatomy_And_Physio$$$Figure 28.7.6 | Anatomy_And_Physio$$$ddd57eb9-b6ef-4574-9bc9-18ae412e5506 | 1 |
Anatomy_And_Physio$$$Figure 28.7.6 | Anatomy_And_Physio$$$ce4ae496-4b8d-4fe7-b31b-e9258acd57bf | 1 |
Anatomy_And_Physio$$$Figure 28.7.6 | Anatomy_And_Physio$$$6ae46a9d-f4bb-464f-8f8c-3fef2b140f72 | 1 |
Anatomy_And_Physio$$$Figure 28.7.6 | Anatomy_And_Physio$$$90c45d87-3097-4fdd-b697-a5c018502449 | 2 |
Anatomy_And_Physio$$$Figure 28.7.6 | Anatomy_And_Physio$$$0b4a1161-bdc4-4fa0-8155-a5ccfb269daf | 1 |
Anatomy_And_Physio$$$Figure 28.6.1 | Anatomy_And_Physio$$$c27453f8-87ab-4d7c-8392-9077bb7c2f16 | 1 |
Anatomy_And_Physio$$$Figure 28.6.1 | Anatomy_And_Physio$$$0bbc0e55-6312-4a51-9d44-2a59074b35d8 | 1 |
Anatomy_And_Physio$$$Figure 28.6.1 | Anatomy_And_Physio$$$9c70f88e-e161-4f06-a3ef-d79c0cf944e8 | 1 |
Anatomy_And_Physio$$$Figure 28.6.1 | Anatomy_And_Physio$$$f8ec265d-9229-41e6-a662-ca9347807caf | 1 |
Anatomy_And_Physio$$$Figure 28.6.1 | Anatomy_And_Physio$$$0614c14e-4192-43d7-983f-4da913d4b255 | 2 |
Anatomy_And_Physio$$$Figure 28.6.1 | Anatomy_And_Physio$$$dbc49d50-e8ca-4b7e-871d-651eef288dc4 | 1 |
Anatomy_And_Physio$$$Figure 28.5.1 | Anatomy_And_Physio$$$47b6a68a-7fad-4757-b5b1-49530cc88c04 | 1 |
Anatomy_And_Physio$$$Figure 28.5.1 | Anatomy_And_Physio$$$6bc17aa7-055a-4ed1-b20b-4390cba77b80 | 2 |
Anatomy_And_Physio$$$Figure 28.5.1 | Anatomy_And_Physio$$$f0b8c822-4662-406f-b857-2b4d27008206 | 1 |
Anatomy_And_Physio$$$Figure 28.4.1 | Anatomy_And_Physio$$$db9fb0f7-f112-4efa-ae93-e6325f5a744b | 1 |
Anatomy_And_Physio$$$Figure 28.4.1 | Anatomy_And_Physio$$$b2fb8d96-7e2e-4670-b509-0a6a9e9e400c | 1 |
Anatomy_And_Physio$$$Figure 28.4.1 | Anatomy_And_Physio$$$0da87c55-885f-4d00-8781-1659d04e4e5e | 1 |
Anatomy_And_Physio$$$Figure 28.4.1 | Anatomy_And_Physio$$$ba593ae6-a511-429c-9332-b6cd0dd583b9 | 1 |
Anatomy_And_Physio$$$Figure 28.4.1 | Anatomy_And_Physio$$$273124cd-319c-4fe6-beb4-19cf969ed3cd | 1 |
Anatomy_And_Physio$$$Figure 28.4.1 | Anatomy_And_Physio$$$3fefba63-6303-4aba-bdb1-9eadc9d899fd | 1 |
Anatomy_And_Physio$$$Figure 28.4.1 | Anatomy_And_Physio$$$86b4b2a0-822b-4831-8ac9-a704402ef767 | 2 |
Anatomy_And_Physio$$$Figure 28.4.3 | Anatomy_And_Physio$$$807aefd9-efcc-41b7-865a-34c3207e8472 | 1 |
Anatomy_And_Physio$$$Figure 28.4.3 | Anatomy_And_Physio$$$524b43be-a055-4f6d-b07f-d654cf2796e1 | 1 |
Anatomy_And_Physio$$$Figure 28.4.3 | Anatomy_And_Physio$$$6c438b70-906c-4a7c-bd29-444101d492ef | 2 |
Anatomy_And_Physio$$$Figure 28.4.3 | Anatomy_And_Physio$$$635ec6a4-47fe-459e-8cad-24bbb5c57a36 | 1 |
Anatomy_And_Physio$$$Figure 28.4.3 | Anatomy_And_Physio$$$3985d435-ae79-4630-86bc-81666a162e20 | 1 |
Anatomy_And_Physio$$$Figure 28.4.3 | Anatomy_And_Physio$$$879de23d-1534-47c3-8980-b94d27f21267 | 1 |
Anatomy_And_Physio$$$Figure 28.4.4 | Anatomy_And_Physio$$$2bab7729-572d-42a9-9df8-a99463a6546b | 1 |
Anatomy_And_Physio$$$Figure 28.4.4 | Anatomy_And_Physio$$$3e3ea78d-a80e-4427-9db5-8577523c6ce3 | 2 |
Anatomy_And_Physio$$$Figure 28.4.4 | Anatomy_And_Physio$$$494d9e30-47db-423a-a677-373cdddf1d2d | 1 |
Anatomy_And_Physio$$$Figure 28.3.1 | Anatomy_And_Physio$$$721aae62-5808-4379-997b-cf0fbfebd816 | 1 |
Anatomy_And_Physio$$$Figure 28.3.1 | Anatomy_And_Physio$$$36eed267-0ca8-40fd-80d0-982f6cdacb6e | 2 |
Anatomy_And_Physio$$$Figure 28.3.1 | Anatomy_And_Physio$$$4c32e5c6-9121-4617-aa32-05a659cbd1e4 | 1 |
Anatomy_And_Physio$$$Figure 28.3.1 | Anatomy_And_Physio$$$493d7f37-74de-4f28-a307-f2c7cfc5ce43 | 1 |
Anatomy_And_Physio$$$Figure 28.3.2 | Anatomy_And_Physio$$$b0997275-9c26-4a68-b822-26e5e5d5de24 | 1 |
Anatomy_And_Physio$$$Figure 28.3.2 | Anatomy_And_Physio$$$83db608a-4655-4308-a04d-fb250c0bb676 | 1 |
Anatomy_And_Physio$$$Figure 28.3.2 | Anatomy_And_Physio$$$65257d19-ee64-44e9-8941-5e25ae94e8b4 | 2 |
Anatomy_And_Physio$$$Figure 28.3.2 | Anatomy_And_Physio$$$fb68ca60-6654-4cda-bbfd-41d8d515c166 | 1 |
Anatomy_And_Physio$$$Figure 28.3.2 | Anatomy_And_Physio$$$c06548e7-eb05-429a-99e6-6d50d8149c03 | 1 |
Anatomy_And_Physio$$$Figure 28.2.1 | Anatomy_And_Physio$$$20bff5fc-4057-43f9-9762-32cd0a75ae93 | 1 |
Anatomy_And_Physio$$$Figure 28.2.1 | Anatomy_And_Physio$$$adcd4aa1-20f5-4c94-8b67-d96a1006632b | 2 |
Anatomy_And_Physio$$$Figure 28.2.1 | Anatomy_And_Physio$$$e3a5274a-a737-4396-a40c-c2fd3f944eb4 | 1 |
Anatomy_And_Physio$$$Figure 28.2.1 | Anatomy_And_Physio$$$ed662868-d8f0-4b94-8f8f-37a1e40d6c43 | 1 |
Anatomy_And_Physio$$$Figure 28.2.1 | Anatomy_And_Physio$$$b2bfae9e-75fd-42db-967a-11c5036922ac | 1 |
Anatomy_And_Physio$$$Figure 28.2.2 | Anatomy_And_Physio$$$49109f15-d99f-482d-89c5-9fd04b99800a | 1 |
Anatomy_And_Physio$$$Figure 28.2.2 | Anatomy_And_Physio$$$04a53e5b-54fe-414e-b9d0-4aa1124552a5 | 2 |
Anatomy_And_Physio$$$Figure 28.2.2 | Anatomy_And_Physio$$$f8fc8f56-2368-41ce-abe4-2991a05517ef | 1 |
Anatomy_And_Physio$$$Figure 28.2.2 | Anatomy_And_Physio$$$e4d7bde5-53a3-41fe-8739-a7163c0ee784 | 1 |
Anatomy_And_Physio$$$Figure 28.2.3 | Anatomy_And_Physio$$$49109f15-d99f-482d-89c5-9fd04b99800a | 1 |
Anatomy_And_Physio$$$Figure 28.2.3 | Anatomy_And_Physio$$$04a53e5b-54fe-414e-b9d0-4aa1124552a5 | 1 |
Anatomy_And_Physio$$$Figure 28.2.3 | Anatomy_And_Physio$$$f8fc8f56-2368-41ce-abe4-2991a05517ef | 2 |
Anatomy_And_Physio$$$Figure 28.2.3 | Anatomy_And_Physio$$$e4d7bde5-53a3-41fe-8739-a7163c0ee784 | 1 |
Anatomy_And_Physio$$$Figure 28.2.5 | Anatomy_And_Physio$$$93bb4b27-aac9-4c8e-a361-3817b7e96085 | 1 |
Anatomy_And_Physio$$$Figure 28.2.5 | Anatomy_And_Physio$$$c9d12da9-447f-4452-8897-f5e4d3e70354 | 1 |
Anatomy_And_Physio$$$Figure 28.2.5 | Anatomy_And_Physio$$$0232bba0-8797-4113-9f34-c858215e5ed2 | 2 |
Anatomy_And_Physio$$$Figure 28.2.5 | Anatomy_And_Physio$$$ceb33528-f00f-4c70-96d2-f997ff746863 | 1 |
Anatomy_And_Physio$$$Figure 28.2.5 | Anatomy_And_Physio$$$da78f602-6c55-457d-85a8-da1f2e2acb1e | 1 |
Anatomy_And_Physio$$$Figure 28.2.6 | Anatomy_And_Physio$$$4d649c0b-e8c6-42a0-a34c-8104d73c990c | 1 |
Anatomy_And_Physio$$$Figure 28.2.6 | Anatomy_And_Physio$$$3c09ee70-8866-4b40-a978-15b7b2cfdb73 | 2 |
Anatomy_And_Physio$$$Figure 28.2.6 | Anatomy_And_Physio$$$dbda7534-b8cc-43dd-bafc-f13909454df1 | 1 |
Anatomy_And_Physio$$$Figure 28.2.7 | Anatomy_And_Physio$$$4d649c0b-e8c6-42a0-a34c-8104d73c990c | 1 |
Anatomy_And_Physio$$$Figure 28.2.7 | Anatomy_And_Physio$$$3c09ee70-8866-4b40-a978-15b7b2cfdb73 | 1 |
Anatomy_And_Physio$$$Figure 28.2.7 | Anatomy_And_Physio$$$dbda7534-b8cc-43dd-bafc-f13909454df1 | 2 |
Anatomy_And_Physio$$$Figure 28.2.8 | Anatomy_And_Physio$$$0568eea1-1316-4502-ad4f-c60bef2fdca7 | 1 |
Anatomy_And_Physio$$$Figure 28.2.8 | Anatomy_And_Physio$$$5678e08a-b960-4410-a027-c99103de5d5f | 1 |
Anatomy_And_Physio$$$Figure 28.2.8 | Anatomy_And_Physio$$$6523169d-b898-422d-912e-fc994fe7e79e | 2 |
Anatomy_And_Physio$$$Figure 28.2.8 | Anatomy_And_Physio$$$416948f9-3c5b-4354-876c-28ddaa2cf8b7 | 1 |
Anatomy_And_Physio$$$Figure 28.2.8 | Anatomy_And_Physio$$$2d40b12d-ef2c-4746-8dd9-0e95e71e2038 | 1 |
Anatomy_And_Physio$$$Figure 28.2.8 | Anatomy_And_Physio$$$c1be3a17-df5f-43b0-bd5f-3409d786e9ed | 1 |
Anatomy_And_Physio$$$Figure 28.2.9 | Anatomy_And_Physio$$$0568eea1-1316-4502-ad4f-c60bef2fdca7 | 1 |
Anatomy_And_Physio$$$Figure 28.2.9 | Anatomy_And_Physio$$$5678e08a-b960-4410-a027-c99103de5d5f | 1 |
Anatomy_And_Physio$$$Figure 28.2.9 | Anatomy_And_Physio$$$6523169d-b898-422d-912e-fc994fe7e79e | 1 |
Anatomy_And_Physio$$$Figure 28.2.9 | Anatomy_And_Physio$$$416948f9-3c5b-4354-876c-28ddaa2cf8b7 | 2 |
End of preview.
M3Retrieve: Benchmarking Multimodal Retrieval for Medicine
Arkadeep Acharya, Akash Ghosh, Pradeepika Verma, Sriparna Saha, Kitsuchart Pashupa
Each of the folder contains 3 files queries.jsonl, corpus.jsonl, qrels/test.tsv containing the queries, corpus and relevancy mapping files respectively.
The images can be found in the images.zip file, where the images have been sorted based on their medical disciplines.
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