index
int64 | seq_len
int64 | id
int64 | name
string | host
string | species
string | organism_name
string | location_in_host
string | family
string | genus
string | molecule_type
string | decribtion_full
string | chunked_seqs
string | relative_position
int64 | number_of_chunks
int64 | percentage_position
float64 | sequence_quality
float64 | __index_level_0__
int64 | input_ids
list | attention_mask
list |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
210,426 | 11,948 | 1,832,837 |
NC_075016.1
|
Homo sapiens
|
Ross River virus
|
Ross River virus
|
Togaviridae
|
Alphavirus
|
ssRNA(+)
|
NC_075016.1 |Ross River virus strain QML 1, complete genome|GCF_002889255.1|Ross River virus||2023-05-04T00:00:00Z|National Center for Biotechnology Information, NIH|USA|Jones,A., Lowry,K., Aaskov,J., Holmes,E.C., Kitchen,A.||Ross River virus|Alphavirus|complete|Togaviridae|ssRNA(+)|11948|RefSeq|||1|Australia: northeast|Australia||Homo sapiens||2004||PRJNA485481
|
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| 0 | 8 | 0.1 | 0 | 1,832,837 |
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] |
|
210,426 | 11,948 | 1,832,841 |
NC_075016.1
|
Homo sapiens
|
Ross River virus
|
Ross River virus
|
Togaviridae
|
Alphavirus
|
ssRNA(+)
|
NC_075016.1 |Ross River virus strain QML 1, complete genome|GCF_002889255.1|Ross River virus||2023-05-04T00:00:00Z|National Center for Biotechnology Information, NIH|USA|Jones,A., Lowry,K., Aaskov,J., Holmes,E.C., Kitchen,A.||Ross River virus|Alphavirus|complete|Togaviridae|ssRNA(+)|11948|RefSeq|||1|Australia: northeast|Australia||Homo sapiens||2004||PRJNA485481
|
atgaagagagacgtgaaagttacccctggcactaaacataccgaggaacgcccaaaggtgcaagtcatccaggctgccgaacctttagctacagcttatttatgcggcattcacagggagttggtccgtcgcctgaaggccgtcctggccccgaacatacatacattgttcgatatgtcggcagaagattttgatgccatcatagctgcacatttccaaccaggcgacgcagttttggaaacggacatagcctcctttgacaagagtcaagatgactctttggcgctgacggcactgatgctgttggaggacctcggggttgaccaagaactactagacctgatagaggcagcgtttggggaaattaccagcgtccacctgccaacaggtacgcggttcaagttcggcgctatgatgaagtccggaatgttcctgacactgtttataaataccctgttaaacattgtcatagcatgccgtgtactgcgtgagaagctgacgaactccgtctgcgccgcgtttatcggggatgacaacatagtgcacggggtaagatctgacccgttgatggctgaaaggtgcgccagctgggttaatatggaggtaaagataatcgatgctaccatgtgcgagaaaccaccatatttctgcggcgggtttatattgtatgacaaagtcaccggctcggcgtgccgagtggccgaccccctgaaaaggttatttaaattaggtaaacctttacccgccggagacacccaagatgaagatcgtaggcgtgcattgaaggatgagacggatagatgggcacgagtagggttgaagtctgaactggaaatagcactaagttcccggtatgaggtgaacgggaccggcaacatagtgcgagcaatggccacactggccaagagcttgaagaattttaaaaagctgcgtggacccattgtacacctctacggtggtcctaaatagatgcagagacacaccttcatctaatacagctcacaacagcaaacatgaattacataccaacccagactttctacggacgccgttggcggcctcgcccggcgttccgtccatggcaggtgccgatgcagccgacacctactatggttgcacccatgctgcaagcaccagacctacaggcccaacagatgcaacaactgatcagcgctgtctctgcactaaccaccaaacagaatgtaaaagcaccaaaagggcaaaggaaaaagaaacagcagaaaccaaaggaaaagaaggaaaaacagaagaaaaagccgacgcaaaagaaaaagcagcagcagaaaccaaaaccgcaggctaagaagaagaaaccagggagaagagaaagaatgtgcatgaagatcgagaatgactgcatattcgaggtcaaactggacggcaaggttaccggttatgcgtgcctagtcggagataaggtcatgaagccggctcacgttaaaggcacaattgataacccagaccttgcgaagttgacttacaagaagtccagtaagtatgacctcgaatgcgcccagatcccagtgcacatgaagtccgacgcctccaagtacacacatgaaaaacccgaaggtcattacaactggcaccatggagcagtgcagtacagcggaggaaggtttaccatccccacaggcgccggcaaaccaggagacagcggtaggcctatttttgacaacaaagggcgagtggtggccatcgtgttaggcggggccaacgaaggtgctcgcactgcgctgtctgtggtgacgtggacaaaagacatggtcactcgggtaacgccagaaggaaccgaagagtggtctgccgcgctgatgatgtgcatccttgccaacacctctttcccatgctcatcacctccctgctacccctgctgctacgaaaaacagccagaacagacactgcggatgctggaagacaacgtgaacagacctgggtactatgagttactggaagcgtccatgacatgccgaaacggatcacgccaccgccgtagtgtaacagagcacttcaatgtgtataaggct
| 4 | 8 | 0.6 | 0 | 1,832,841 |
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] |
|
210,426 | 11,948 | 1,832,842 |
NC_075016.1
|
Homo sapiens
|
Ross River virus
|
Ross River virus
|
Togaviridae
|
Alphavirus
|
ssRNA(+)
|
NC_075016.1 |Ross River virus strain QML 1, complete genome|GCF_002889255.1|Ross River virus||2023-05-04T00:00:00Z|National Center for Biotechnology Information, NIH|USA|Jones,A., Lowry,K., Aaskov,J., Holmes,E.C., Kitchen,A.||Ross River virus|Alphavirus|complete|Togaviridae|ssRNA(+)|11948|RefSeq|||1|Australia: northeast|Australia||Homo sapiens||2004||PRJNA485481
|
ccccacaggcgccggcaaaccaggagacagcggtaggcctatttttgacaacaaagggcgagtggtggccatcgtgttaggcggggccaacgaaggtgctcgcactgcgctgtctgtggtgacgtggacaaaagacatggtcactcgggtaacgccagaaggaaccgaagagtggtctgccgcgctgatgatgtgcatccttgccaacacctctttcccatgctcatcacctccctgctacccctgctgctacgaaaaacagccagaacagacactgcggatgctggaagacaacgtgaacagacctgggtactatgagttactggaagcgtccatgacatgccgaaacggatcacgccaccgccgtagtgtaacagagcacttcaatgtgtataaggctactagaccatacctagcacattgcgctgattgcggggacgggtacttctgctatagcccagttgccatcgagaagatccgagatgaggcgtctgatggcatgctcaagatccaagtctccgcccaaataggtctggacaaggcaggcacccacgcccacacgaagctccgatatatggctggtcacgatgttcaggaatctaagagagattccttgagggtgtacacgtccgcagcgtgctccatacatgggacgatgggacacttcatcgtcgcacactgtccaccaggcgactacctcaaggtttcgttcgaggacgcagattcgcacgtgaaggcatgtaaggtccaatacaagcacaatccattgccggtgggtagagagaagttcgtggttagaccacactttggcgtagagctgccatgcacctcataccagctgacaacggctcccaccgacgaggagattgacatgcatacaccgccagatataccggatcgcaccctgctatcacagacggcgggcaacgtcaaaataacagcaggcggcaggactatcaggtacaattgtacctgcggccgtgacaacgtaggcactaccagtactgacaagaccatcaacacatgcaagattgaccaatgccatgctgccgtcaccagccatgacaaatggcaatttacctctccatttgttcccagggctgatcagacagctaggaaaggcaaggtacacgttccgttccctctgactaacgtcacctgccgagtgccgttggctcgagcgccggatgtcacctatggtaagaaggaggtgaccctgagattacacccagatcatccgacactcttctcctataggagtttaggagccgaaccgcacccgtacgaggaatgggttgacaagttctctgagcgcatcatcccagtgacggaagaagggattgaataccagtggggcaacaacccgccggtccgcctgtgggcgcaactgacgaccgagggcaaaccccatggatggccacatgaaatcattcagtactattatggactataccccgccgccactattgccgcagtatccggggcgagtctgatggccctcctaactctggcggccacatgctgcatgctggccaccgcgaggagaaagtgcctaacaccgtacgccctgacgccaggagcggtggtaccgttgacactggggctgctttgctgcgcaccgagggcgaatgcagcatcattcgctgagactatggcctatctgtgggacgagaacaaaaccctcttttggatggaatttgcggccccggccgctgcgcttgctttgctggcatgctgtatcaaaagcctgatctgctgttgtaagccattctcttttttagtgttactgagcctgggagcctccgtaaaagcttacgagcacacggccacaattccgaacgtggtggggttcccgtataaggctcacattgaaaggaatggtttctcgcccatgactctgcagctcgaagtggtggagacaagcttggaacccacacttaacctggagtacattacctgcgaatataagacggtggtcccttcgccatttatcaaatgttgcggaacatcagaatgctcatctaaagagcagccagactaccaatgca
| 5 | 8 | 0.8 | 0 | 1,832,842 |
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] |
|
210,426 | 11,948 | 1,832,843 |
NC_075016.1
|
Homo sapiens
|
Ross River virus
|
Ross River virus
|
Togaviridae
|
Alphavirus
|
ssRNA(+)
|
NC_075016.1 |Ross River virus strain QML 1, complete genome|GCF_002889255.1|Ross River virus||2023-05-04T00:00:00Z|National Center for Biotechnology Information, NIH|USA|Jones,A., Lowry,K., Aaskov,J., Holmes,E.C., Kitchen,A.||Ross River virus|Alphavirus|complete|Togaviridae|ssRNA(+)|11948|RefSeq|||1|Australia: northeast|Australia||Homo sapiens||2004||PRJNA485481
|
actatggcctatctgtgggacgagaacaaaaccctcttttggatggaatttgcggccccggccgctgcgcttgctttgctggcatgctgtatcaaaagcctgatctgctgttgtaagccattctcttttttagtgttactgagcctgggagcctccgtaaaagcttacgagcacacggccacaattccgaacgtggtggggttcccgtataaggctcacattgaaaggaatggtttctcgcccatgactctgcagctcgaagtggtggagacaagcttggaacccacacttaacctggagtacattacctgcgaatataagacggtggtcccttcgccatttatcaaatgttgcggaacatcagaatgctcatctaaagagcagccagactaccaatgcaaggtatacacgggcgtataccctttcatgtggggtggagcctactgcttctgcgactccgagaacacgcagcttagcgaggcctatgtcgacaggtctgacatttgcaaacatgatcatgcattggcctacaaggcacacacagcctctctaaaagcaacaatcaggatcagctacggcaccatcaaccagaccaccgaggccttcgtcaatggagaacacgcggtcaacgtgggcggaagcaagttcatctttggaccgatctcaacagcttggtcaccgttcgacaataaaattgtcgtgtataaagatgatgtctacaaccaggactttccaccctatggatcaggtcagccgggtagattcggagacattcagagcaggacagtggagagcaaagacctgtacgccaacacggccctaaaactctcaagaccatcacccggggtcgtgcatgtgccatacacgcagacaccatccggatttaaatactggctgaaggagaaaggatcttcattgaacacaaaggccccttttggctgcaagataaagaccaatccagtcagagccatggactgtgcagttggcagtatacctgtgtcgatggacatacctgacagtgcattcacacgagtggtggatgccccggctgtaacagacctgagctgccaggtagcggtctgtacacactcctccgacttcggaggagttgccacattgtcttacaagacggacaaacccggcaagtgcgctgtccactcacattccaatgtcgcaacgctgcaagaggcgacggtggatgtcaaggaggacggcaaggtcacggtgcacttttccacggcgtccgcctccccggcattcaaagtgtccgtctgtgacgcaaaaacaacgtgcacagcggcgtgtgagcctccgaaagaccatatcgtcccttatggggcgagccataacaaccaggtctttccggacatgtcaggaaccgcgatgacgtgggtgcagaggatggccagtgggttaggcgggctggctctcatcgcggtgcttgtgctggtcttggtaacctgcataacaatgcgtcggtaagcattagttcaaagggccatatatacccctgaatagtaacaaaatataaaaattacaaaatatgtagttcaaagggctatactacccctgattagtaacaaaatagaaaattacaaaaatatgtagttaagtattataagatgtgtagttcaaagggctataatacccctgattagtaacaaaatataaaaataaaaacatgtaggtaagtactaaccaataagtagacaaatatatgctaaccatatatataaccagctacagtatactatatttagttaagcagttgcagtagttaagaatgtagttcaaagggctatacaacccctgaatagtaacaaaatacaaaaatactaataaaaattttaaaaatcacaagaaatttcattatcaaattattaattggctagccgaactctaaggagatgtaggcgtccgaactctacggagatgtaggactaaattctgccgaaccccataacaccggggacgtaggcgtctaatttgtttttaatattttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
| 6 | 8 | 0.9 | 0 | 1,832,843 |
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] |
|
210,428 | 2,762 | 1,832,845 |
MW760329.1
|
Capsicum
|
Chilli leaf curl virus
|
Chilli leaf curl virus
|
plant leaf
|
Geminiviridae
|
Begomovirus
|
ssDNA(+/-)
|
MW760329.1 |Chilli leaf curl virus isolate CHL57, complete genome||Chilli leaf curl virus||2022-08-06T00:00:00Z|Indian Institute of Horticultural Research, Plant Pathology|India|Ashwathappa,K., Venkataravanappa,V., Lakshminarayanareddy,C., Hemachandrareddy,P., Naik,M., Krishnareddy,M., Ashwathappa,K.V., Hema Chandrareddy,P., Lakshminarayana Reddy,C.N., Naik,M.K., Krishna Reddy,M.|CHL57|Chilli leaf curl virus|Begomovirus|complete|Geminiviridae|ssDNA(+/-)|2762|GenBank||||India: Karnataka, Ranibenur|India||Capsicum|plant leaf|2018-01-05||
|
accggatggccgcgattttttaaccgtgggccccaccacgcacgtgctgacaaagacatgtgcaccaattaaaatcgtccctcatagcttaattatttcatggtcccccctataaacttgggctccaagtagtgcactcttaccaatgtgggatccattagtaaacgagtttcctgaaaccgttcacggttttaggtgtatgttagcagttaaatatctgcagctactagaaaatacatatgctccagacacgctggggtacgatttaatcagggatttgatctccgttattagggctaagaattatgtccaagcgaccagcagatataatcatttccacgcccgcctcgaaggtacgccgccgtctcaacttcgacagcccttatgccagccgtgctgctgcccccactgtccgcgtcacaaaggccagagcatgggtgaacaggcccatgaacaggaagcccaggatgtacaggatgtacagaagcccagatgttcctaggggttgtgaaggcccatgtaaggtccagtcttttgagtctagacacgatgtagttcatatagggaaggttatgtgtattagtgatgttacccgtggtactgggttaacccatagagtaggtaagcgtttttgtgttaagtctgtgtacgtattagggaagatatggatggatgagaatatcaagactaagaatcacacgaatagtgtgatgtttttccttgtccgggatcgtcgtcctgttgataaaccacaagattttggagaggtgttcaacatgtttgacaacgagcctagcactgccactgtgaagaatatgcatagagatcgttatcaggttttgaggaaatggcacgcaacggttactggtggacagtatgcgtcgaaggaacaggcattagttaagaagttcgttagggttaataattatgttgtgtataaccagcaggaagctggtaaatatgagaatcatactgagaatgcattgatgttgtacatggcgtgtactcacgcctctaatcctgtgtatgctaccttaaagatacggatctatttctatgattcagtatcgaattaataaagattgaaatctattatatttgaactttgtacatgaattgtttgtgctaatacattccataatacatggttgacagctctaagtacattgtttatactaattacagcaaaattatttaaatacttatacacttgtgtcctaaatacccttaagaaatgaccagtctgaggctgtaaggtcgtccagattcggaaggttagaaaacatttgtgtatccccaacgctttcctcaggttgtgattgaaccgtatctgcacggtgatgatgtcttggttcctcaggaatggccggttgtggtgctcggttatcttgaaatacaggggatttgttatctcccaaataaacacgccattctcggcctgagctgcagtgatgggttcccctgtgcgtgaatccatagccgtggcagcgtaatgcgatgaaatatgaacagccgcagtctaggtcaactcgacgacgcctggtccccctcttggccagcctgtgctgcactttgattggaacctgagtagagtgggccttcgagggtgatgaaggtcgcattctttaaagcccaattttttagtgcgctatttttctcttcatccaagaactctttatagctggaattgggtcctggattgcagaggaagatagcgggaattccacctttaatttgaactggctttccgtattttgtgttggattgccagtccctttgggcccccatgaattccttaaagtgctttaggtagtggggatcgacgtcatcaatgacgttgtaccaggcgtcattactgtagacctttgggctaaggtcgagatgtccacacaaatagttgtgtggacctagtgacctggcccacattgtcttgcccgttctactatcgccctctatcacaatacttatgggtcttaatggccgcgcagcggcaccgagaacattctcggcagcccattcttcaagttcctccggaacttgatcgaaag
| 0 | 2 | 0.5 | 0 | 1,832,845 |
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] |
210,428 | 2,762 | 1,832,846 |
MW760329.1
|
Capsicum
|
Chilli leaf curl virus
|
Chilli leaf curl virus
|
plant leaf
|
Geminiviridae
|
Begomovirus
|
ssDNA(+/-)
|
MW760329.1 |Chilli leaf curl virus isolate CHL57, complete genome||Chilli leaf curl virus||2022-08-06T00:00:00Z|Indian Institute of Horticultural Research, Plant Pathology|India|Ashwathappa,K., Venkataravanappa,V., Lakshminarayanareddy,C., Hemachandrareddy,P., Naik,M., Krishnareddy,M., Ashwathappa,K.V., Hema Chandrareddy,P., Lakshminarayana Reddy,C.N., Naik,M.K., Krishna Reddy,M.|CHL57|Chilli leaf curl virus|Begomovirus|complete|Geminiviridae|ssDNA(+/-)|2762|GenBank||||India: Karnataka, Ranibenur|India||Capsicum|plant leaf|2018-01-05||
|
ctatttttctcttcatccaagaactctttatagctggaattgggtcctggattgcagaggaagatagcgggaattccacctttaatttgaactggctttccgtattttgtgttggattgccagtccctttgggcccccatgaattccttaaagtgctttaggtagtggggatcgacgtcatcaatgacgttgtaccaggcgtcattactgtagacctttgggctaaggtcgagatgtccacacaaatagttgtgtggacctagtgacctggcccacattgtcttgcccgttctactatcgccctctatcacaatacttatgggtcttaatggccgcgcagcggcaccgagaacattctcggcagcccattcttcaagttcctccggaacttgatcgaaagaagaagaacaaaaaggacaaacataaacctccaacggaggcgtaaaaatcctatctaaattagcacttaaattatgaaattgtaatacaaaatctttgggagctttctcccttaatatattgagggccgcagctttggaccctgaattgattgcctcggcatatgcgtcgttggcagactgctgacctcctctagctgatcttccatcgacttggaaaactccaaaatcaatgaagtctccgtttttttccacataggccttgacatctgacgagcttttagctccctgaatgttcggatggaaatgtgctggcctggttggggaaacgaggtcgaagaatctgttgttttggcatttgaatttaccttcgaattgtatgaggacgtggagatgaggttccccattttcatgtaattcgcgacaaaccctgatgaacaatttattagtgggggtgcttaggttttgaagttgggaaagtgcttcttctttagtgagggaacactgtggatatgttaagaaataatttttagcatatatttgaaaacgttttggaggagccatgttgacttggtcaatcggtactcaacaaacttggctatgcaatcggtgaatggtactcaatatatagtgtgagtacgaaatggcatgttcgtaattttgaaggcaaattcaaaattcaacttccgacaaaagcggccatccgcactaatatt
| 1 | 2 | 1 | 0 | 1,832,846 |
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] |
210,429 | 10,648 | 1,832,848 |
FJ562097.1
|
Homo sapiens
|
Dengue virus type 3
|
Orthoflavivirus denguei
|
blood
|
Flaviviridae
|
Orthoflavivirus
|
ssRNA(+)
|
FJ562097.1 |Dengue virus 3 isolate DENV-3/VN/BID-V1790/2007, complete genome|set:FJ562097|Dengue virus type 3||2009-01-26T00:00:00Z|Broad Institute of MIT and Harvard|USA|Henn,M.R., Young,S., Kodira,C., Koehrsen,M., Jaffe,D., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Borenstein,D., Engels,R., Freedman,E., Gellesch,M., Howarth,C., Jen,D., Larson,L., Lewis,B., Montgomery,P., Park,D., Pearson,M., Richards,J., Roberts,A., Sisk,P., Stolte,C., White,J., Zeng,Q., Yandava,C., Oleary,S., Alvarado,L., Alvarez,P., Brockman,W., Butler,J., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., McCallum,I., Vu,H.T., Nguyen,Q.H., Nguyen,Q.T., Duong,P.H., Tran,H.T., Nguyen,L.T.M., Nguyen,L.P.H., Lander,E., Galagan,J., Nusbaum,C., Simmons,C.P., Birren,B.|DENV-3/VN/BID-V1790/2007|Orthoflavivirus denguei|Orthoflavivirus|complete|Flaviviridae|ssRNA(+)|10648|GenBank||||Viet Nam: South|Viet Nam||Homo sapiens|blood|2007||PRJNA31235
|
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| 1 | 7 | 0.3 | 0 | 1,832,848 |
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] |
210,429 | 10,648 | 1,832,849 |
FJ562097.1
|
Homo sapiens
|
Dengue virus type 3
|
Orthoflavivirus denguei
|
blood
|
Flaviviridae
|
Orthoflavivirus
|
ssRNA(+)
|
FJ562097.1 |Dengue virus 3 isolate DENV-3/VN/BID-V1790/2007, complete genome|set:FJ562097|Dengue virus type 3||2009-01-26T00:00:00Z|Broad Institute of MIT and Harvard|USA|Henn,M.R., Young,S., Kodira,C., Koehrsen,M., Jaffe,D., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Borenstein,D., Engels,R., Freedman,E., Gellesch,M., Howarth,C., Jen,D., Larson,L., Lewis,B., Montgomery,P., Park,D., Pearson,M., Richards,J., Roberts,A., Sisk,P., Stolte,C., White,J., Zeng,Q., Yandava,C., Oleary,S., Alvarado,L., Alvarez,P., Brockman,W., Butler,J., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., McCallum,I., Vu,H.T., Nguyen,Q.H., Nguyen,Q.T., Duong,P.H., Tran,H.T., Nguyen,L.T.M., Nguyen,L.P.H., Lander,E., Galagan,J., Nusbaum,C., Simmons,C.P., Birren,B.|DENV-3/VN/BID-V1790/2007|Orthoflavivirus denguei|Orthoflavivirus|complete|Flaviviridae|ssRNA(+)|10648|GenBank||||Viet Nam: South|Viet Nam||Homo sapiens|blood|2007||PRJNA31235
|
tgatacacgaatggtgttgccgctcatgcacacttcctcccttacgatacatgggagaggacggctgctggtatggcatggaaattagacctatcaatgagaaagaagagaacatggtaaagtctttagtctcagcagggagtggaaaggtggacaacttcacaatgggagtcctgtgtttggcaatcctcttcgaagaggtgatgagaggaaaatttgggaaaaaacacatgattgcaggggttctcttcacgtttgtgctccttctctcagggcaaataacatggagagatatggcacacacactcataatgattgggtccaacgcttctgacaggatgggaatgggcgttacctacttagctttaattgcaacattcaaaatccagccattcttggctttgggattcttcctgaggaaattgacatctagagaaaatttgctgttgggagttgggttggccatggcagcaacgttacaactgccagaggacattgaacaaatggcgaatggaattgctctggggctcatgactctaaaactgataacacaatttgagacatatcagttgtggacagcattagtctccttaacatgttcaaacacaattttcacgctgactgttgcctggagaacagccaccttgattctggccggagtttcgcttttgccactgtgccagtcttcgagcatgaggaaaacagattggctcccaatgactgtagcagctatgggagttccacccttaccactttttatcttcagcttgaaggacacaccaaaaaggaggagctggccactgaatgagggggtgatggctgttgggcttgtgagcattctagctagttctctccttaggaatgatgtgcccatggctggaccactagtggccgggggcttgttgatagcgtgctatgtcataactggcacgtcagcagacctcactgtagaaaaggcagcagatgtaacatgggaggaagaggctgagcaaacaggagtgtcccacaatttgatgatcacagttgatgatgatggaacaatgagaataaaggatgatgagactgagaacatcctaacagtgctcttaaaaacagcattactaatagtatcaggcgtctttccatactccatacccgccacactgttggtctggcatacttggcaaaagcaaacccaaagatctggcgttctatgggacgtacccagccccccagaaacacagaaagcagaactggaagagggggtttataggatcaaacaacaaggaatttttgggaaaacccaagtgggggttggagtgcagaaagaaggagtcttccacaccatgtggcacgtcacaagaggggcagtgttgacgcacaatgggaaaagactggaaccaaactgggccagtgtgaaaaaagatctgatttcatacggaggaggatggagattgagcgcacaatggcaaaaaggagaggaggtgcaggttattgccgtagagcctgggaagaacccaaaaaacttccaaaccatgccgggcatttttcagacaacaacgggggaaataggagcaattgcactagacttcaagcctggaacttcaggatctcctatcataaacagagagggaaaggtagtgggactgtatggcaatggagtggttacgaaaaatggtggttacgtcagtggaatagcgcaaacaaatgcagaaccagacggaccgacaccggaattggaagaagaaatgttcaaaaagcgaaatctaaccataatggatcttcatcctgggtcaggaaagacgcggaaatatcttccagccatcgttagagaagcaatcaagagacgtttgagaactctaattttggcaccaacaagagtggttgcagctgagatggaagaagcactgaaaggactcccaataaggtatcaaacaactgcaacaaaatctgaacacacaggaagggagatcgttgatctaatgtgccacgcaacattcacaatgcgcttgctatcaccagtcagggttccaaattacaatttgataataatggatgaggcccatttc
| 2 | 7 | 0.4 | 0 | 1,832,849 |
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] |
210,429 | 10,648 | 1,832,850 |
FJ562097.1
|
Homo sapiens
|
Dengue virus type 3
|
Orthoflavivirus denguei
|
blood
|
Flaviviridae
|
Orthoflavivirus
|
ssRNA(+)
|
FJ562097.1 |Dengue virus 3 isolate DENV-3/VN/BID-V1790/2007, complete genome|set:FJ562097|Dengue virus type 3||2009-01-26T00:00:00Z|Broad Institute of MIT and Harvard|USA|Henn,M.R., Young,S., Kodira,C., Koehrsen,M., Jaffe,D., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Borenstein,D., Engels,R., Freedman,E., Gellesch,M., Howarth,C., Jen,D., Larson,L., Lewis,B., Montgomery,P., Park,D., Pearson,M., Richards,J., Roberts,A., Sisk,P., Stolte,C., White,J., Zeng,Q., Yandava,C., Oleary,S., Alvarado,L., Alvarez,P., Brockman,W., Butler,J., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., McCallum,I., Vu,H.T., Nguyen,Q.H., Nguyen,Q.T., Duong,P.H., Tran,H.T., Nguyen,L.T.M., Nguyen,L.P.H., Lander,E., Galagan,J., Nusbaum,C., Simmons,C.P., Birren,B.|DENV-3/VN/BID-V1790/2007|Orthoflavivirus denguei|Orthoflavivirus|complete|Flaviviridae|ssRNA(+)|10648|GenBank||||Viet Nam: South|Viet Nam||Homo sapiens|blood|2007||PRJNA31235
|
gaaaaatggtggttacgtcagtggaatagcgcaaacaaatgcagaaccagacggaccgacaccggaattggaagaagaaatgttcaaaaagcgaaatctaaccataatggatcttcatcctgggtcaggaaagacgcggaaatatcttccagccatcgttagagaagcaatcaagagacgtttgagaactctaattttggcaccaacaagagtggttgcagctgagatggaagaagcactgaaaggactcccaataaggtatcaaacaactgcaacaaaatctgaacacacaggaagggagatcgttgatctaatgtgccacgcaacattcacaatgcgcttgctatcaccagtcagggttccaaattacaatttgataataatggatgaggcccatttcacagatccagccagtatagcggctagagggtacatatcaactcgtgtaggaatgggagaggcagctgcaattttcatgacagcaacaccccccggaactgctgaagcctttccccagagcaacgctccaattcaagatgaagaaagggatattccggaacgctcatggaattcaggcaatgaatggattaccgactttgttggaaagacggtgtggtttgtacctagcatcaaagccggaaatgacatagcaaactgcctgcggaaaaatgggaaaaaggtcatccaacttagtagaaagacttttgatacagaatatcaaaagaccaaactgaatgattgggacttcgtggtgacaacagacatttcagaaatgggagctaactttaaagcagatagagtgattgacccaagaagatgtctcaagccagtaattttgacagatggacccgagcgagtgatcctggctggaccaatgccagtcaccgcagcgagcgctgcgcaaaggagagggagagttggcaggaacccacaaaaggaaaatgaccagtacatattcacgggccagcctctcaacaatgacgaagaccatgctcactggacagaagcaaaaatgctgctagacaacatcaacacaccagaagggatcataccagctctatttgaaccagagagggagaagtcagccgctatagacggtgaataccgcctgaagggtgagtccaggaagaccttcgtggaactcatgaggaggggagacctcccagtttggctagcccacaaagtagcctcagaagggatcaaatacacagacagaaaatggtgctttgatggagaacgtaataatcaaattttagaggagaacatggatgtggaaatctggacaaaggaaggagaaaggaaaaaattgagacctaggtggcttgatgcccgcacttattcagatcccttagcactcaaggaattcaaggattttgcagctggcagaaagtcaatcgcccttgatcttgtgacagaaataggaagagtgccttcacacttagcctacagaacgagaaacgccctggacaacttggtgatgttgcacacgtcagaacatggcggtagggcctacaggcatgcagtggaggaactaccagaaacaatggaaacactcctactcttgggactcatgatcttattaacaggtggagcaatgcttttcttgatatcaggtaaagggattggaaagacttcaataggactcatttgtgttattgtttccagtggcatgttatggatggctgatgtcccacttcaatggatcgcgtcggctatagtcctggaatttttcatgatggtgttgctcataccagaaccagaaaaacaaagaactccccaagacaaccaactcgcatatgtcgtgataggcatactaacactggctgcgatagtagcagctaatgaaatgggattattggaaactacaaagagagacttaggaatgtctaaagaaccaggcgttgtttctccaaccagctatttagatgtagacttgcacccagcatcagcctggacattgtacgccgtggccacaacagtaataacaccaatgttgagacataccatagagaattccacagcaaatgtatccctggcagccatagcta
| 3 | 7 | 0.6 | 0 | 1,832,850 |
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] |
210,429 | 10,648 | 1,832,851 |
FJ562097.1
|
Homo sapiens
|
Dengue virus type 3
|
Orthoflavivirus denguei
|
blood
|
Flaviviridae
|
Orthoflavivirus
|
ssRNA(+)
|
FJ562097.1 |Dengue virus 3 isolate DENV-3/VN/BID-V1790/2007, complete genome|set:FJ562097|Dengue virus type 3||2009-01-26T00:00:00Z|Broad Institute of MIT and Harvard|USA|Henn,M.R., Young,S., Kodira,C., Koehrsen,M., Jaffe,D., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Borenstein,D., Engels,R., Freedman,E., Gellesch,M., Howarth,C., Jen,D., Larson,L., Lewis,B., Montgomery,P., Park,D., Pearson,M., Richards,J., Roberts,A., Sisk,P., Stolte,C., White,J., Zeng,Q., Yandava,C., Oleary,S., Alvarado,L., Alvarez,P., Brockman,W., Butler,J., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., McCallum,I., Vu,H.T., Nguyen,Q.H., Nguyen,Q.T., Duong,P.H., Tran,H.T., Nguyen,L.T.M., Nguyen,L.P.H., Lander,E., Galagan,J., Nusbaum,C., Simmons,C.P., Birren,B.|DENV-3/VN/BID-V1790/2007|Orthoflavivirus denguei|Orthoflavivirus|complete|Flaviviridae|ssRNA(+)|10648|GenBank||||Viet Nam: South|Viet Nam||Homo sapiens|blood|2007||PRJNA31235
|
tgtgttattgtttccagtggcatgttatggatggctgatgtcccacttcaatggatcgcgtcggctatagtcctggaatttttcatgatggtgttgctcataccagaaccagaaaaacaaagaactccccaagacaaccaactcgcatatgtcgtgataggcatactaacactggctgcgatagtagcagctaatgaaatgggattattggaaactacaaagagagacttaggaatgtctaaagaaccaggcgttgtttctccaaccagctatttagatgtagacttgcacccagcatcagcctggacattgtacgccgtggccacaacagtaataacaccaatgttgagacataccatagagaattccacagcaaatgtatccctggcagccatagctaaccaggcagtggtcctgatgggtttagacaaaggatggccaatatcgaaaatggatctaggcgtaccgctactggcactgggctgctattcacaagtgaacccactgactctcacagcggcagtacttctgctagttacacattatgccattataggtccaggattgcaggctaaagccactcgtgaagctcaaaaaagaacagctgctggaataatgaagaatccaacggtggatgggataatgacaatagacctagatcctgtaatatacgattcaaaattcgaaaagcaactaggacaggtcatgctcctggttctgtgtgcagttcaactcttgttaatgagaacatcatgggcattgtgtgaagctctaaccctagccacaggaccaataacaacactctgggaaggatcacctggaaagttttggaacaccacgatagctgtttccatggctaacatctttagagggagctacttagcaggagctgggcttgctttttctatcatgaaatcagttggaacaggaaggagaggaacggggtcacaaggcgaaaccttaggagaaaagtggaaaaagaaattaaatcagttgtcccggaaagagtttgacctttacaagaaatctggaattactgaagtggatagaacagaagccaaagaagggttgaaaagaggagaaacaacacatcatgccgtgtccagaggcagcgcaaaacttcaatggttcgtggagaggaacatggtcattcccgaaggaagagtcatagacttaggctgtggaagaggaggctggtcatattactgtgcaggactgaaaaaagttacagaagtgcgaggatacacaaaaggtggcccaggacacgaagaaccagtacccatgtccacatacggatggaatatagtcaagctaatgagtggaaaggacgtgttttatcttccacctgaaaagtgtgacaccctattgtgtgacattggagaatcttcaccaagcccaacagtggaagaaagcagaactataagagtcttgaagatggttgagccatggctaaaaaacaaccagttttgcattaaagtattaaacccttacatgccaactgtgattgagcacctagaaagattacaaagaaaatatggaggaatgcttgtgagaaacccactctcacgaaactccacgcatgaaatgtactggatatccaatggtactggcaacatcgtctcttcagtcaacatggtatccagattgctactaaacagatttacgatgacacacaggagacccaccatagagaaagatgtggatttgggagcaggaactcgacatgtcaatgcggaaccagaaacacccaacatggacgtcattggagaaagaataaaaaggatcaaggaggagcatagttcaacatggcactatgatgatgaaaatccttacaaaacgtgggcttaccatggatcctatgaagtcaaagccacaggctcagcctcctccatgataaatggagtcgtgaaactcctcacaaaaccatgggatgtggttcccatggtgacacagatggcaatgacagatacaactccatttgggcagcaaagagttttcaaagagaaagtggacaccaggacacccaggcccatgccagggacaagaaa
| 4 | 7 | 0.7 | 0 | 1,832,851 |
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] |
210,429 | 10,648 | 1,832,852 |
FJ562097.1
|
Homo sapiens
|
Dengue virus type 3
|
Orthoflavivirus denguei
|
blood
|
Flaviviridae
|
Orthoflavivirus
|
ssRNA(+)
|
FJ562097.1 |Dengue virus 3 isolate DENV-3/VN/BID-V1790/2007, complete genome|set:FJ562097|Dengue virus type 3||2009-01-26T00:00:00Z|Broad Institute of MIT and Harvard|USA|Henn,M.R., Young,S., Kodira,C., Koehrsen,M., Jaffe,D., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Borenstein,D., Engels,R., Freedman,E., Gellesch,M., Howarth,C., Jen,D., Larson,L., Lewis,B., Montgomery,P., Park,D., Pearson,M., Richards,J., Roberts,A., Sisk,P., Stolte,C., White,J., Zeng,Q., Yandava,C., Oleary,S., Alvarado,L., Alvarez,P., Brockman,W., Butler,J., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., McCallum,I., Vu,H.T., Nguyen,Q.H., Nguyen,Q.T., Duong,P.H., Tran,H.T., Nguyen,L.T.M., Nguyen,L.P.H., Lander,E., Galagan,J., Nusbaum,C., Simmons,C.P., Birren,B.|DENV-3/VN/BID-V1790/2007|Orthoflavivirus denguei|Orthoflavivirus|complete|Flaviviridae|ssRNA(+)|10648|GenBank||||Viet Nam: South|Viet Nam||Homo sapiens|blood|2007||PRJNA31235
|
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| 5 | 7 | 0.9 | 0 | 1,832,852 |
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] |
210,430 | 3,215 | 1,832,853 |
JF899338.1
|
Homo sapiens
|
Hepatitis B virus
|
Hepatitis B virus
|
Hepadnaviridae
|
Orthohepadnavirus
|
dsDNA-RT
|
JF899338.1 |Hepatitis B virus isolate 10B6, complete genome|set:JF899338|Hepatitis B virus||2011-09-04T00:00:00Z|Sichuan Center for Disease Control and Prevention, Institute of Microbiological Detection|China|Tong,W., He,J., Sun,L., He,S., Qi,Q.|10B6|Hepatitis B virus|Orthohepadnavirus|complete|Hepadnaviridae|dsDNA-RT|3215|GenBank|||1|China|China||Homo sapiens||2010-04-25||
|
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| 0 | 2 | 0.5 | 0 | 1,832,853 |
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1,
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1,
1,
1,
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1,
1,
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1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
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1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
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1,
1,
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1,
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1,
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1,
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1,
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1,
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1,
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1,
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1,
1
] |
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