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Datasets:
HHS-Official
/
project-tycho-level-1-data

Languages:
English
Tags:
hhs
epidemiology
nndss
surveillance
License:
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Dataset Preview
The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed
Error code:   DatasetGenerationError
Exception:    ArrowInvalid
Message:      Failed to parse string: '\N' as a scalar of type int64
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1871, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 643, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2293, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2246, in cast_table_to_schema
                  arrays = [
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2247, in <listcomp>
                  cast_array_to_feature(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1796, in wrapper
                  return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1796, in <listcomp>
                  return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2103, in cast_array_to_feature
                  return array_cast(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1798, in wrapper
                  return func(array, *args, **kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1950, in array_cast
                  return array.cast(pa_type)
                File "pyarrow/array.pxi", line 996, in pyarrow.lib.Array.cast
                File "/src/services/worker/.venv/lib/python3.9/site-packages/pyarrow/compute.py", line 404, in cast
                  return call_function("cast", [arr], options, memory_pool)
                File "pyarrow/_compute.pyx", line 590, in pyarrow._compute.call_function
                File "pyarrow/_compute.pyx", line 385, in pyarrow._compute.Function.call
                File "pyarrow/error.pxi", line 154, in pyarrow.lib.pyarrow_internal_check_status
                File "pyarrow/error.pxi", line 91, in pyarrow.lib.check_status
              pyarrow.lib.ArrowInvalid: Failed to parse string: '\N' as a scalar of type int64
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1433, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1050, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 925, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1001, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1742, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1898, in _prepare_split_single
                  raise DatasetGenerationError("An error occurred while generating the dataset") from e
              datasets.exceptions.DatasetGenerationError: An error occurred while generating the dataset

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epi_week
int64
state
string
loc
string
loc_type
string
disease
string
cases
int64
incidence_per_100000
float64
196,601
MN
MINNESOTA
STATE
HEPATITIS A
3
0.08
196,601
CO
COLORADO
STATE
HEPATITIS A
1
0.05
196,601
AZ
ARIZONA
STATE
HEPATITIS A
6
0.37
196,601
MT
MONTANA
STATE
HEPATITIS A
2
0.28
196,601
LA
LOUISIANA
STATE
HEPATITIS A
1
0.03
196,601
WA
WASHINGTON
STATE
HEPATITIS A
5
0.16
196,601
CA
CALIFORNIA
STATE
HEPATITIS A
89
0.47
196,601
MO
MISSOURI
STATE
HEPATITIS A
5
0.11
196,601
AL
ALABAMA
STATE
HEPATITIS A
5
0.14
196,601
NC
NORTH CAROLINA
STATE
HEPATITIS A
8
0.16
196,601
MD
MARYLAND
STATE
HEPATITIS A
9
0.24
196,601
GA
GEORGIA
STATE
HEPATITIS A
4
0.09
196,601
MS
MISSISSIPPI
STATE
HEPATITIS A
1
0.04
196,601
HI
HAWAII
STATE
HEPATITIS A
3
0.42
196,601
WV
WEST VIRGINIA
STATE
HEPATITIS A
1
0.06
196,601
NJ
NEW JERSEY
STATE
HEPATITIS A
21
0.31
196,601
NM
NEW MEXICO
STATE
HEPATITIS A
13
1.29
196,601
ID
IDAHO
STATE
HEPATITIS A
2
0.29
196,601
KS
KANSAS
STATE
HEPATITIS A
6
0.27
196,601
RI
RHODE ISLAND
STATE
HEPATITIS A
6
0.67
196,601
KY
KENTUCKY
STATE
HEPATITIS A
26
0.83
196,601
FL
FLORIDA
STATE
HEPATITIS A
7
0.11
196,601
AR
ARKANSAS
STATE
HEPATITIS A
11
0.58
196,601
IA
IOWA
STATE
HEPATITIS A
12
0.43
196,601
IL
ILLINOIS
STATE
HEPATITIS A
6
0.06
196,601
TX
TEXAS
STATE
HEPATITIS A
62
0.59
196,601
VA
VIRGINIA
STATE
HEPATITIS A
11
0.25
196,601
MI
MICHIGAN
STATE
HEPATITIS A
84
0.99
196,601
SC
SOUTH CAROLINA
STATE
HEPATITIS A
4
0.16
196,601
DE
DELAWARE
STATE
HEPATITIS A
3
0.58
196,601
WI
WISCONSIN
STATE
HEPATITIS A
15
0.35
196,601
NV
NEVADA
STATE
HEPATITIS A
3
0.67
196,601
ND
NORTH DAKOTA
STATE
HEPATITIS A
1
0.15
196,601
OR
OREGON
STATE
HEPATITIS A
14
0.71
196,601
CT
CONNECTICUT
STATE
HEPATITIS A
9
0.31
196,601
TN
TENNESSEE
STATE
HEPATITIS A
93
2.43
196,601
OH
OHIO
STATE
HEPATITIS A
40
0.39
196,601
UT
UTAH
STATE
HEPATITIS A
1
0.1
196,601
WY
WYOMING
STATE
HEPATITIS A
1
0.31
196,601
IN
INDIANA
STATE
HEPATITIS A
2
0.04
196,601
PA
PENNSYLVANIA
STATE
HEPATITIS A
26
0.22
196,601
MA
MASSACHUSETTS
STATE
HEPATITIS A
10
0.18
196,601
NH
NEW HAMPSHIRE
STATE
HEPATITIS A
3
0.44
196,601
ME
MAINE
STATE
HEPATITIS A
6
0.6
196,602
MI
MICHIGAN
STATE
HEPATITIS A
47
0.55
196,602
OR
OREGON
STATE
HEPATITIS A
19
0.96
196,602
AZ
ARIZONA
STATE
HEPATITIS A
25
1.55
196,602
TN
TENNESSEE
STATE
HEPATITIS A
32
0.84
196,602
IL
ILLINOIS
STATE
HEPATITIS A
28
0.26
196,602
NM
NEW MEXICO
STATE
HEPATITIS A
15
1.49
196,602
AL
ALABAMA
STATE
HEPATITIS A
3
0.09
196,602
IA
IOWA
STATE
HEPATITIS A
5
0.18
196,602
UT
UTAH
STATE
HEPATITIS A
4
0.4
196,602
SC
SOUTH CAROLINA
STATE
HEPATITIS A
2
0.08
196,602
DE
DELAWARE
STATE
HEPATITIS A
3
0.58
196,602
MS
MISSISSIPPI
STATE
HEPATITIS A
9
0.4
196,602
IN
INDIANA
STATE
HEPATITIS A
8
0.16
196,602
FL
FLORIDA
STATE
HEPATITIS A
11
0.18
196,602
AK
ALASKA
STATE
HEPATITIS A
6
2.21
196,602
HI
HAWAII
STATE
HEPATITIS A
1
0.14
196,602
WI
WISCONSIN
STATE
HEPATITIS A
9
0.21
196,602
CT
CONNECTICUT
STATE
HEPATITIS A
8
0.28
196,602
MA
MASSACHUSETTS
STATE
HEPATITIS A
10
0.18
196,602
NH
NEW HAMPSHIRE
STATE
HEPATITIS A
1
0.15
196,602
CA
CALIFORNIA
STATE
HEPATITIS A
122
0.65
196,602
PA
PENNSYLVANIA
STATE
HEPATITIS A
38
0.33
196,602
WA
WASHINGTON
STATE
HEPATITIS A
9
0.29
196,602
VA
VIRGINIA
STATE
HEPATITIS A
12
0.27
196,602
TX
TEXAS
STATE
HEPATITIS A
40
0.38
196,602
MD
MARYLAND
STATE
HEPATITIS A
10
0.27
196,602
NC
NORTH CAROLINA
STATE
HEPATITIS A
14
0.29
196,602
LA
LOUISIANA
STATE
HEPATITIS A
8
0.23
196,602
MN
MINNESOTA
STATE
HEPATITIS A
3
0.08
196,602
MO
MISSOURI
STATE
HEPATITIS A
5
0.11
196,602
KS
KANSAS
STATE
HEPATITIS A
4
0.18
196,602
WV
WEST VIRGINIA
STATE
HEPATITIS A
4
0.23
196,602
NY
NEW YORK
STATE
HEPATITIS A
74
0.41
196,602
CO
COLORADO
STATE
HEPATITIS A
3
0.15
196,602
ND
NORTH DAKOTA
STATE
HEPATITIS A
1
0.15
196,602
OH
OHIO
STATE
HEPATITIS A
25
0.24
196,602
ME
MAINE
STATE
HEPATITIS A
17
1.7
196,602
KY
KENTUCKY
STATE
HEPATITIS A
23
0.73
196,602
NJ
NEW JERSEY
STATE
HEPATITIS A
25
0.36
196,602
AR
ARKANSAS
STATE
HEPATITIS A
6
0.32
196,602
ID
IDAHO
STATE
HEPATITIS A
2
0.29
196,602
NV
NEVADA
STATE
HEPATITIS A
4
0.9
196,603
DE
DELAWARE
STATE
HEPATITIS A
2
0.39
196,603
NC
NORTH CAROLINA
STATE
HEPATITIS A
13
0.27
196,603
FL
FLORIDA
STATE
HEPATITIS A
18
0.29
196,603
WI
WISCONSIN
STATE
HEPATITIS A
10
0.23
196,603
MD
MARYLAND
STATE
HEPATITIS A
6
0.16
196,603
CT
CONNECTICUT
STATE
HEPATITIS A
5
0.17
196,603
VA
VIRGINIA
STATE
HEPATITIS A
14
0.31
196,603
KY
KENTUCKY
STATE
HEPATITIS A
17
0.54
196,603
NJ
NEW JERSEY
STATE
HEPATITIS A
10
0.15
196,603
AZ
ARIZONA
STATE
HEPATITIS A
9
0.56
196,603
HI
HAWAII
STATE
HEPATITIS A
2
0.28
196,603
IN
INDIANA
STATE
HEPATITIS A
10
0.2
196,603
ME
MAINE
STATE
HEPATITIS A
14
1.4
196,603
TN
TENNESSEE
STATE
HEPATITIS A
39
1.02
End of preview.

Project Tycho ® Level 1 Data

Description

US weekly Nationally Notifiable Disease Surveillance Data from 1888 to 2013. These data include tables of disease counts reported by US states and cities to the Federal Health Authorities every week since 1888. These tables have been published in various journals over time and are available in various online repositories but are now also available in digital, computer-readable format.

Dataset Details

  • Publisher: U.S. Department of Health & Human Services
  • Temporal Coverage: 1888-01-01T00:00:00-05:00/2013-08-16T00:00:00-04:00
  • Last Modified: 2024-11-18
  • Contact: Project Tycho ([email protected])

Source

Original data can be found at: https://www.Tycho.Pitt.edu

Usage

You can load this dataset using:

from datasets import load_dataset
 dataset = load_dataset('HHS-Official/project-tycho-level-1-data')

License

This dataset is licensed under https://opendatacommons.org/licenses/odbl/1.0/

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