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cancer_study_identifier: acc_tcga_pan_can_atlas_2018
stable_id: acc_tcga_pan_can_atlas_2018_rna_seq_v2_mrna
case_list_name: Samples with mRNA data (RNA Seq V2)
case_list_description: Samples with mRNA expression data (78 samples)
case_list_category: all_cases_with_mrna_rnaseq_data
case_list_ids: TCGA-OR-A5JY-01 TCGA-OR-A5JV-01 TCGA-OR-A5JC-01 TCGA-OR-A5J5-01 TCGA-OR-A5JB-01 TCGA-OR-A5JL-01 TCGA-OR-A5JA-01 TCGA-OR-A5LL-01 TCGA-OR-A5L9-01 TCGA-OR-A5L5-01 TCGA-OR-A5JJ-01 TCGA-OR-A5JI-01 TCGA-OR-A5JF-01 TCGA-OR-A5K0-01 TCGA-OR-A5J2-01 TCGA-OR-A5J1-01 TCGA-OR-A5JT-01 TCGA-OR-A5KY-01 TCGA-OR-A5JW-01 TCGA-OR-A5LP-01 TCGA-OR-A5K5-01 TCGA-OR-A5JP-01 TCGA-OR-A5LG-01 TCGA-OR-A5LM-01 TCGA-OR-A5JK-01 TCGA-OR-A5J8-01 TCGA-OR-A5LO-01 TCGA-PK-A5H9-01 TCGA-OR-A5JG-01 TCGA-OR-A5KW-01 TCGA-OR-A5LS-01 TCGA-OR-A5JS-01 TCGA-OR-A5JE-01 TCGA-OR-A5JR-01 TCGA-OR-A5JZ-01 TCGA-OR-A5JQ-01 TCGA-OR-A5K8-01 TCGA-PK-A5HB-01 TCGA-OR-A5JM-01 TCGA-PK-A5HA-01 TCGA-OR-A5K4-01 TCGA-PK-A5H8-01 TCGA-OR-A5KZ-01 TCGA-OR-A5KU-01 TCGA-OR-A5K3-01 TCGA-OR-A5K6-01 TCGA-OR-A5KO-01 TCGA-OR-A5JX-01 TCGA-OR-A5L8-01 TCGA-OU-A5PI-01 TCGA-OR-A5LJ-01 TCGA-OR-A5LB-01 TCGA-OR-A5K1-01 TCGA-OR-A5LK-01 TCGA-OR-A5K2-01 TCGA-OR-A5KX-01 TCGA-OR-A5LH-01 TCGA-OR-A5KT-01 TCGA-OR-A5L6-01 TCGA-OR-A5J9-01 TCGA-OR-A5J6-01 TCGA-PA-A5YG-01 TCGA-OR-A5KV-01 TCGA-OR-A5LE-01 TCGA-OR-A5LC-01 TCGA-OR-A5L3-01 TCGA-OR-A5LT-01 TCGA-P6-A5OF-01 TCGA-OR-A5J3-01 TCGA-OR-A5L4-01 TCGA-OR-A5LA-01 TCGA-OR-A5LR-01 TCGA-OR-A5JO-01 TCGA-OR-A5LN-01 TCGA-OR-A5LD-01 TCGA-OR-A5K9-01 TCGA-OR-A5J7-01 TCGA-OR-A5JD-01
cancer_study_identifier: acc_tcga_pan_can_atlas_2018
stable_id: acc_tcga_pan_can_atlas_2018_all
case_list_name: All samples
case_list_description: All samples (92 samples)
case_list_category: all_cases_in_study
case_list_ids: TCGA-OR-A5LK-01 TCGA-OR-A5JV-01 TCGA-OR-A5JC-01 TCGA-OR-A5JB-01 TCGA-OR-A5JA-01 TCGA-OR-A5LL-01 TCGA-OR-A5OG-01 TCGA-OR-A5L5-01 TCGA-OR-A5LT-01 TCGA-OR-A5JW-01 TCGA-OR-A5K5-01 TCGA-OR-A5JP-01 TCGA-OR-A5LG-01 TCGA-OR-A5JK-01 TCGA-OR-A5J8-01 TCGA-OR-A5LO-01 TCGA-OR-A5KW-01 TCGA-OR-A5KP-01 TCGA-OR-A5JE-01 TCGA-PK-A5H8-01 TCGA-OR-A5LC-01 TCGA-PK-A5HB-01 TCGA-PK-A5HA-01 TCGA-OR-A5KU-01 TCGA-OR-A5K6-01 TCGA-OR-A5KB-01 TCGA-OR-A5LJ-01 TCGA-OR-A5L8-01 TCGA-OU-A5PI-01 TCGA-OR-A5K1-01 TCGA-OR-A5K2-01 TCGA-OR-A5KX-01 TCGA-OR-A5JZ-01 TCGA-OR-A5KT-01 TCGA-OR-A5J6-01 TCGA-OR-A5L1-01 TCGA-OR-A5KS-01 TCGA-OR-A5JJ-01 TCGA-OR-A5LF-01 TCGA-OR-A5L4-01 TCGA-PK-A5H9-01 TCGA-OR-A5LR-01 TCGA-OR-A5LN-01 TCGA-OR-A5K9-01 TCGA-OR-A5JD-01 TCGA-OR-A5JY-01 TCGA-OR-A5LD-01 TCGA-OR-A5J5-01 TCGA-OR-A5LP-01 TCGA-OR-A5JL-01 TCGA-OR-A5LS-01 TCGA-OR-A5L9-01 TCGA-P6-A5OF-01 TCGA-OR-A5JI-01 TCGA-OR-A5JF-01 TCGA-OR-A5K0-01 TCGA-OR-A5J2-01 TCGA-OR-A5J1-01 TCGA-OR-A5LI-01 TCGA-OR-A5KY-01 TCGA-OR-A5LE-01 TCGA-OR-A5LB-01 TCGA-OR-A5JU-01 TCGA-OR-A5LM-01 TCGA-OR-A5LA-01 TCGA-OR-A5JG-01 TCGA-OR-A5JR-01 TCGA-OR-A5JQ-01 TCGA-OR-A5K8-01 TCGA-OR-A5JM-01 TCGA-OR-A5K4-01 TCGA-OR-A5KZ-01 TCGA-OR-A5K3-01 TCGA-OR-A5KO-01 TCGA-OR-A5JX-01 TCGA-OR-A5J4-01 TCGA-OR-A5J3-01 TCGA-OR-A5L2-01 TCGA-OR-A5JH-01 TCGA-OR-A5LH-01 TCGA-OR-A5L6-01 TCGA-OR-A5J9-01 TCGA-PA-A5YG-01 TCGA-OR-A5KV-01 TCGA-OR-A5L3-01 TCGA-OR-A5JT-01 TCGA-PK-A5HC-01 TCGA-OR-A5JS-01 TCGA-OR-A5KQ-01 TCGA-OR-A5JO-01 TCGA-P6-A5OH-01 TCGA-OR-A5J7-01
cancer_study_identifier: acc_tcga_pan_can_atlas_2018
stable_id: acc_tcga_pan_can_atlas_2018_cna
case_list_name: Samples with CNA data
case_list_description: Samples with CNA data (89 samples)
case_list_category: all_cases_with_cna_data
case_list_ids: TCGA-OR-A5LK-01 TCGA-OR-A5JC-01 TCGA-OR-A5JB-01 TCGA-OR-A5JA-01 TCGA-OR-A5LL-01 TCGA-OR-A5L5-01 TCGA-OR-A5LT-01 TCGA-OR-A5JP-01 TCGA-OR-A5LG-01 TCGA-OR-A5J8-01 TCGA-OR-A5LO-01 TCGA-OR-A5JE-01 TCGA-OR-A5LC-01 TCGA-OR-A5KU-01 TCGA-OR-A5LJ-01 TCGA-OR-A5L8-01 TCGA-OR-A5KT-01 TCGA-OR-A5J6-01 TCGA-OR-A5L1-01 TCGA-OR-A5JJ-01 TCGA-OR-A5LF-01 TCGA-OR-A5L4-01 TCGA-PK-A5H9-01 TCGA-OR-A5LN-01 TCGA-OR-A5K9-01 TCGA-OR-A5JD-01 TCGA-OR-A5J5-01 TCGA-OR-A5LP-01 TCGA-OR-A5JL-01 TCGA-OR-A5LS-01 TCGA-OR-A5L9-01 TCGA-OR-A5JI-01 TCGA-OR-A5J2-01 TCGA-OR-A5J1-01 TCGA-OR-A5LI-01 TCGA-OR-A5KY-01 TCGA-OR-A5LB-01 TCGA-OR-A5LM-01 TCGA-OR-A5LA-01 TCGA-OR-A5K8-01 TCGA-OR-A5JM-01 TCGA-OR-A5KZ-01 TCGA-OR-A5J4-01 TCGA-OR-A5J3-01 TCGA-OR-A5L2-01 TCGA-OR-A5JH-01 TCGA-OR-A5L6-01 TCGA-PA-A5YG-01 TCGA-OR-A5KV-01 TCGA-PK-A5HC-01 TCGA-OR-A5KQ-01 TCGA-OR-A5JO-01 TCGA-P6-A5OH-01 TCGA-OR-A5J7-01 TCGA-OR-A5JV-01 TCGA-OR-A5JW-01 TCGA-OR-A5K5-01 TCGA-OR-A5JK-01 TCGA-OR-A5KW-01 TCGA-OR-A5KP-01 TCGA-PK-A5HB-01 TCGA-PK-A5HA-01 TCGA-OR-A5K6-01 TCGA-OR-A5KB-01 TCGA-OU-A5PI-01 TCGA-OR-A5K1-01 TCGA-OR-A5K2-01 TCGA-OR-A5KX-01 TCGA-OR-A5JZ-01 TCGA-OR-A5KS-01 TCGA-OR-A5LR-01 TCGA-OR-A5JY-01 TCGA-OR-A5LD-01 TCGA-OR-A5JF-01 TCGA-OR-A5K0-01 TCGA-OR-A5LE-01 TCGA-OR-A5JU-01 TCGA-OR-A5JG-01 TCGA-OR-A5JR-01 TCGA-OR-A5JQ-01 TCGA-OR-A5K4-01 TCGA-OR-A5K3-01 TCGA-OR-A5KO-01 TCGA-OR-A5JX-01 TCGA-OR-A5LH-01 TCGA-OR-A5J9-01 TCGA-OR-A5L3-01 TCGA-OR-A5JT-01 TCGA-OR-A5JS-01
cancer_study_identifier: acc_tcga_pan_can_atlas_2018
stable_id: acc_tcga_pan_can_atlas_2018_cnaseq
case_list_name: Samples with mutation and CNA data
case_list_description: Samples with mutation and CNA data (89 samples)
case_list_category: all_cases_with_mutation_and_cna_data
case_list_ids: TCGA-OR-A5LK-01 TCGA-OR-A5JC-01 TCGA-OR-A5JB-01 TCGA-OR-A5JA-01 TCGA-OR-A5LL-01 TCGA-OR-A5L5-01 TCGA-OR-A5LT-01 TCGA-OR-A5JP-01 TCGA-OR-A5LG-01 TCGA-OR-A5J8-01 TCGA-OR-A5LO-01 TCGA-OR-A5JE-01 TCGA-OR-A5LC-01 TCGA-OR-A5KU-01 TCGA-OR-A5LJ-01 TCGA-OR-A5L8-01 TCGA-OR-A5KT-01 TCGA-OR-A5J6-01 TCGA-OR-A5L1-01 TCGA-OR-A5JJ-01 TCGA-OR-A5LF-01 TCGA-OR-A5L4-01 TCGA-PK-A5H9-01 TCGA-OR-A5LN-01 TCGA-OR-A5K9-01 TCGA-OR-A5JD-01 TCGA-OR-A5J5-01 TCGA-OR-A5LP-01 TCGA-OR-A5JL-01 TCGA-OR-A5LS-01 TCGA-OR-A5L9-01 TCGA-OR-A5JI-01 TCGA-OR-A5J2-01 TCGA-OR-A5J1-01 TCGA-OR-A5LI-01 TCGA-OR-A5KY-01 TCGA-OR-A5LB-01 TCGA-OR-A5LM-01 TCGA-OR-A5LA-01 TCGA-OR-A5K8-01 TCGA-OR-A5JM-01 TCGA-OR-A5KZ-01 TCGA-OR-A5J4-01 TCGA-OR-A5J3-01 TCGA-OR-A5L2-01 TCGA-OR-A5JH-01 TCGA-OR-A5L6-01 TCGA-PA-A5YG-01 TCGA-OR-A5KV-01 TCGA-PK-A5HC-01 TCGA-OR-A5KQ-01 TCGA-OR-A5JO-01 TCGA-P6-A5OH-01 TCGA-OR-A5J7-01 TCGA-OR-A5JV-01 TCGA-OR-A5JW-01 TCGA-OR-A5K5-01 TCGA-OR-A5JK-01 TCGA-OR-A5KW-01 TCGA-OR-A5KP-01 TCGA-PK-A5HB-01 TCGA-PK-A5HA-01 TCGA-OR-A5K6-01 TCGA-OR-A5KB-01 TCGA-OU-A5PI-01 TCGA-OR-A5K1-01 TCGA-OR-A5K2-01 TCGA-OR-A5KX-01 TCGA-OR-A5JZ-01 TCGA-OR-A5KS-01 TCGA-OR-A5LR-01 TCGA-OR-A5JY-01 TCGA-OR-A5LD-01 TCGA-OR-A5JF-01 TCGA-OR-A5K0-01 TCGA-OR-A5LE-01 TCGA-OR-A5JU-01 TCGA-OR-A5JG-01 TCGA-OR-A5JR-01 TCGA-OR-A5JQ-01 TCGA-OR-A5K4-01 TCGA-OR-A5K3-01 TCGA-OR-A5KO-01 TCGA-OR-A5JX-01 TCGA-OR-A5LH-01 TCGA-OR-A5J9-01 TCGA-OR-A5L3-01 TCGA-OR-A5JT-01 TCGA-OR-A5JS-01
cancer_study_identifier: acc_tcga_pan_can_atlas_2018
stable_id: acc_tcga_pan_can_atlas_2018_3way_complete
case_list_name: Complete samples
case_list_description: Samples with mutation, CNA and expression data (76 samples)
case_list_category: all_cases_with_mutation_and_cna_and_mrna_data
case_list_ids: TCGA-OR-A5LK-01 TCGA-OR-A5JV-01 TCGA-OR-A5JC-01 TCGA-OR-A5JQ-01 TCGA-OR-A5J5-01 TCGA-OR-A5JB-01 TCGA-OR-A5JL-01 TCGA-OR-A5JA-01 TCGA-OR-A5LL-01 TCGA-OR-A5L9-01 TCGA-OR-A5JX-01 TCGA-OR-A5L5-01 TCGA-OR-A5JI-01 TCGA-OR-A5LT-01 TCGA-OR-A5K0-01 TCGA-OR-A5J2-01 TCGA-OR-A5JY-01 TCGA-OR-A5J1-01 TCGA-OR-A5LH-01 TCGA-OR-A5KY-01 TCGA-OR-A5JW-01 TCGA-OR-A5LP-01 TCGA-OR-A5K5-01 TCGA-OR-A5JP-01 TCGA-OR-A5LG-01 TCGA-OR-A5LM-01 TCGA-OR-A5JK-01 TCGA-OR-A5J8-01 TCGA-OR-A5LO-01 TCGA-PK-A5H9-01 TCGA-OR-A5JG-01 TCGA-OR-A5KW-01 TCGA-OR-A5LS-01 TCGA-OR-A5JS-01 TCGA-OR-A5JE-01 TCGA-OR-A5LE-01 TCGA-OR-A5LC-01 TCGA-OR-A5K8-01 TCGA-PK-A5HB-01 TCGA-OR-A5JM-01 TCGA-PK-A5HA-01 TCGA-OR-A5K4-01 TCGA-OR-A5JR-01 TCGA-OR-A5KZ-01 TCGA-OR-A5KU-01 TCGA-OR-A5K3-01 TCGA-OR-A5K6-01 TCGA-OR-A5KO-01 TCGA-OR-A5LJ-01 TCGA-OR-A5L8-01 TCGA-OU-A5PI-01 TCGA-OR-A5J3-01 TCGA-OR-A5LB-01 TCGA-OR-A5K1-01 TCGA-OR-A5K2-01 TCGA-OR-A5KX-01 TCGA-OR-A5JZ-01 TCGA-OR-A5KT-01 TCGA-OR-A5L6-01 TCGA-OR-A5LD-01 TCGA-OR-A5J6-01 TCGA-PA-A5YG-01 TCGA-OR-A5KV-01 TCGA-OR-A5J9-01 TCGA-OR-A5JF-01 TCGA-OR-A5L3-01 TCGA-OR-A5JJ-01 TCGA-OR-A5JT-01 TCGA-OR-A5L4-01 TCGA-OR-A5LA-01 TCGA-OR-A5LR-01 TCGA-OR-A5JO-01 TCGA-OR-A5LN-01 TCGA-OR-A5K9-01 TCGA-OR-A5J7-01 TCGA-OR-A5JD-01
cancer_study_identifier: acc_tcga_pan_can_atlas_2018
stable_id: acc_tcga_pan_can_atlas_2018_log2CNA
case_list_name: Samples with log2 copy-number data
case_list_description: Samples with log2 copy-number data (89 samples)
case_list_category: all_cases_with_log2_cna_data
case_list_ids: TCGA-OR-A5LK-01 TCGA-OR-A5JC-01 TCGA-OR-A5JB-01 TCGA-OR-A5JA-01 TCGA-OR-A5LL-01 TCGA-OR-A5L5-01 TCGA-OR-A5LT-01 TCGA-OR-A5JP-01 TCGA-OR-A5LG-01 TCGA-OR-A5J8-01 TCGA-OR-A5LO-01 TCGA-OR-A5JE-01 TCGA-OR-A5LC-01 TCGA-OR-A5KU-01 TCGA-OR-A5LJ-01 TCGA-OR-A5L8-01 TCGA-OR-A5KT-01 TCGA-OR-A5J6-01 TCGA-OR-A5L1-01 TCGA-OR-A5JJ-01 TCGA-OR-A5LF-01 TCGA-OR-A5L4-01 TCGA-PK-A5H9-01 TCGA-OR-A5LN-01 TCGA-OR-A5K9-01 TCGA-OR-A5JD-01 TCGA-OR-A5J5-01 TCGA-OR-A5LP-01 TCGA-OR-A5JL-01 TCGA-OR-A5LS-01 TCGA-OR-A5L9-01 TCGA-OR-A5JI-01 TCGA-OR-A5J2-01 TCGA-OR-A5J1-01 TCGA-OR-A5LI-01 TCGA-OR-A5KY-01 TCGA-OR-A5LB-01 TCGA-OR-A5LM-01 TCGA-OR-A5LA-01 TCGA-OR-A5K8-01 TCGA-OR-A5JM-01 TCGA-OR-A5KZ-01 TCGA-OR-A5J4-01 TCGA-OR-A5J3-01 TCGA-OR-A5L2-01 TCGA-OR-A5JH-01 TCGA-OR-A5L6-01 TCGA-PA-A5YG-01 TCGA-OR-A5KV-01 TCGA-PK-A5HC-01 TCGA-OR-A5KQ-01 TCGA-OR-A5JO-01 TCGA-P6-A5OH-01 TCGA-OR-A5J7-01 TCGA-OR-A5JV-01 TCGA-OR-A5JW-01 TCGA-OR-A5K5-01 TCGA-OR-A5JK-01 TCGA-OR-A5KW-01 TCGA-OR-A5KP-01 TCGA-PK-A5HB-01 TCGA-PK-A5HA-01 TCGA-OR-A5K6-01 TCGA-OR-A5KB-01 TCGA-OU-A5PI-01 TCGA-OR-A5K1-01 TCGA-OR-A5K2-01 TCGA-OR-A5KX-01 TCGA-OR-A5JZ-01 TCGA-OR-A5KS-01 TCGA-OR-A5LR-01 TCGA-OR-A5JY-01 TCGA-OR-A5LD-01 TCGA-OR-A5JF-01 TCGA-OR-A5K0-01 TCGA-OR-A5LE-01 TCGA-OR-A5JU-01 TCGA-OR-A5JG-01 TCGA-OR-A5JR-01 TCGA-OR-A5JQ-01 TCGA-OR-A5K4-01 TCGA-OR-A5K3-01 TCGA-OR-A5KO-01 TCGA-OR-A5JX-01 TCGA-OR-A5LH-01 TCGA-OR-A5J9-01 TCGA-OR-A5L3-01 TCGA-OR-A5JT-01 TCGA-OR-A5JS-01
cancer_study_identifier: acc_tcga_pan_can_atlas_2018
stable_id: acc_tcga_pan_can_atlas_2018_rppa
case_list_name: Samples with protein data (RPPA)
case_list_description: Samples with protein data (RPPA) (45 samples)
case_list_category: all_cases_with_rppa_data
case_list_ids: TCGA-OR-A5JY-01 TCGA-OR-A5JV-01 TCGA-OR-A5LP-01 TCGA-OR-A5LD-01 TCGA-OR-A5JA-01 TCGA-OR-A5LL-01 TCGA-PK-A5HA-01 TCGA-OR-A5LT-01 TCGA-OR-A5K0-01 TCGA-OR-A5J2-01 TCGA-OR-A5LH-01 TCGA-OR-A5KY-01 TCGA-OR-A5JW-01 TCGA-OR-A5K5-01 TCGA-OR-A5JP-01 TCGA-OR-A5LG-01 TCGA-OR-A5LM-01 TCGA-OR-A5J8-01 TCGA-OR-A5LO-01 TCGA-OR-A5JS-01 TCGA-OR-A5KW-01 TCGA-OR-A5LS-01 TCGA-OR-A5JR-01 TCGA-OR-A5K8-01 TCGA-OR-A5K4-01 TCGA-PK-A5H8-01 TCGA-OR-A5KZ-01 TCGA-OR-A5KU-01 TCGA-OR-A5K3-01 TCGA-OR-A5K6-01 TCGA-OR-A5KO-01 TCGA-OR-A5LJ-01 TCGA-OU-A5PI-01 TCGA-OR-A5J3-01 TCGA-OR-A5K1-01 TCGA-OR-A5LK-01 TCGA-OR-A5KX-01 TCGA-OR-A5JZ-01 TCGA-OR-A5J9-01 TCGA-OR-A5J6-01 TCGA-PA-A5YG-01 TCGA-OR-A5JT-01 TCGA-PK-A5H9-01 TCGA-OR-A5LN-01 TCGA-OR-A5J7-01
cancer_study_identifier: acc_tcga_pan_can_atlas_2018
stable_id: acc_tcga_pan_can_atlas_2018_sequenced
case_list_name: Samples with mutation data
case_list_description: Samples with mutation data (91 samples)
case_list_category: all_cases_with_mutation_data
case_list_ids: TCGA-OR-A5LK-01 TCGA-OR-A5JV-01 TCGA-OR-A5JC-01 TCGA-OR-A5JB-01 TCGA-OR-A5JA-01 TCGA-OR-A5LL-01 TCGA-OR-A5L5-01 TCGA-OR-A5LT-01 TCGA-OR-A5JW-01 TCGA-OR-A5K5-01 TCGA-OR-A5JP-01 TCGA-OR-A5LG-01 TCGA-OR-A5JK-01 TCGA-OR-A5J8-01 TCGA-OR-A5LO-01 TCGA-OR-A5KW-01 TCGA-OR-A5KP-01 TCGA-OR-A5JE-01 TCGA-PK-A5H8-01 TCGA-OR-A5LC-01 TCGA-PK-A5HB-01 TCGA-OR-A5L9-01 TCGA-OR-A5KU-01 TCGA-OR-A5K6-01 TCGA-OR-A5KB-01 TCGA-OR-A5LJ-01 TCGA-OR-A5L8-01 TCGA-OU-A5PI-01 TCGA-OR-A5K1-01 TCGA-OR-A5K2-01 TCGA-OR-A5KX-01 TCGA-OR-A5JZ-01 TCGA-OR-A5KT-01 TCGA-OR-A5J6-01 TCGA-OR-A5L1-01 TCGA-OR-A5KS-01 TCGA-OR-A5JJ-01 TCGA-OR-A5LF-01 TCGA-OR-A5L4-01 TCGA-PK-A5H9-01 TCGA-OR-A5LR-01 TCGA-OR-A5LN-01 TCGA-OR-A5K9-01 TCGA-OR-A5JD-01 TCGA-OR-A5JY-01 TCGA-OR-A5LD-01 TCGA-OR-A5J5-01 TCGA-OR-A5LP-01 TCGA-OR-A5JL-01 TCGA-OR-A5LS-01 TCGA-PK-A5HA-01 TCGA-P6-A5OF-01 TCGA-OR-A5JI-01 TCGA-OR-A5JF-01 TCGA-OR-A5K0-01 TCGA-OR-A5J2-01 TCGA-OR-A5J1-01 TCGA-OR-A5LI-01 TCGA-OR-A5KY-01 TCGA-OR-A5LE-01 TCGA-OR-A5LB-01 TCGA-OR-A5JU-01 TCGA-OR-A5LM-01 TCGA-OR-A5LA-01 TCGA-OR-A5JG-01 TCGA-OR-A5JR-01 TCGA-OR-A5JQ-01 TCGA-OR-A5K8-01 TCGA-OR-A5JM-01 TCGA-OR-A5K4-01 TCGA-OR-A5KZ-01 TCGA-OR-A5K3-01 TCGA-OR-A5KO-01 TCGA-OR-A5JX-01 TCGA-OR-A5J4-01 TCGA-OR-A5J3-01 TCGA-OR-A5L2-01 TCGA-OR-A5JH-01 TCGA-OR-A5LH-01 TCGA-OR-A5L6-01 TCGA-OR-A5J9-01 TCGA-PA-A5YG-01 TCGA-OR-A5KV-01 TCGA-OR-A5L3-01 TCGA-OR-A5JT-01 TCGA-PK-A5HC-01 TCGA-OR-A5JS-01 TCGA-OR-A5KQ-01 TCGA-OR-A5JO-01 TCGA-P6-A5OH-01 TCGA-OR-A5J7-01
cancer_study_identifier: acc_tcga_pan_can_atlas_2018
stable_id: acc_tcga_pan_can_atlas_2018_sv
case_list_name: Samples with SV data
case_list_description: Samples with SV data
case_list_category: all_cases_with_sv_data
case_list_ids: TCGA-OR-A5LK-01 TCGA-OR-A5JV-01 TCGA-OR-A5JC-01 TCGA-OR-A5JB-01 TCGA-OR-A5JA-01 TCGA-OR-A5LL-01 TCGA-OR-A5L5-01 TCGA-OR-A5LT-01 TCGA-OR-A5JW-01 TCGA-OR-A5K5-01 TCGA-OR-A5JP-01 TCGA-OR-A5LG-01 TCGA-OR-A5JK-01 TCGA-OR-A5J8-01 TCGA-OR-A5LO-01 TCGA-OR-A5KW-01 TCGA-OR-A5KP-01 TCGA-OR-A5JE-01 TCGA-PK-A5H8-01 TCGA-OR-A5LC-01 TCGA-PK-A5HB-01 TCGA-OR-A5L9-01 TCGA-OR-A5KU-01 TCGA-OR-A5K6-01 TCGA-OR-A5KB-01 TCGA-OR-A5LJ-01 TCGA-OR-A5L8-01 TCGA-OU-A5PI-01 TCGA-OR-A5K1-01 TCGA-OR-A5K2-01 TCGA-OR-A5KX-01 TCGA-OR-A5JZ-01 TCGA-OR-A5KT-01 TCGA-OR-A5J6-01 TCGA-OR-A5L1-01 TCGA-OR-A5KS-01 TCGA-OR-A5JJ-01 TCGA-OR-A5LF-01 TCGA-OR-A5L4-01 TCGA-PK-A5H9-01 TCGA-OR-A5LR-01 TCGA-OR-A5LN-01 TCGA-OR-A5K9-01 TCGA-OR-A5JD-01 TCGA-OR-A5JY-01 TCGA-OR-A5LD-01 TCGA-OR-A5J5-01 TCGA-OR-A5LP-01 TCGA-OR-A5JL-01 TCGA-OR-A5LS-01 TCGA-PK-A5HA-01 TCGA-P6-A5OF-01 TCGA-OR-A5JI-01 TCGA-OR-A5JF-01 TCGA-OR-A5K0-01 TCGA-OR-A5J2-01 TCGA-OR-A5J1-01 TCGA-OR-A5LI-01 TCGA-OR-A5KY-01 TCGA-OR-A5LE-01 TCGA-OR-A5LB-01 TCGA-OR-A5JU-01 TCGA-OR-A5LM-01 TCGA-OR-A5LA-01 TCGA-OR-A5JG-01 TCGA-OR-A5JR-01 TCGA-OR-A5JQ-01 TCGA-OR-A5K8-01 TCGA-OR-A5JM-01 TCGA-OR-A5K4-01 TCGA-OR-A5KZ-01 TCGA-OR-A5K3-01 TCGA-OR-A5KO-01 TCGA-OR-A5JX-01 TCGA-OR-A5J4-01 TCGA-OR-A5J3-01 TCGA-OR-A5L2-01 TCGA-OR-A5JH-01 TCGA-OR-A5LH-01 TCGA-OR-A5L6-01 TCGA-OR-A5J9-01 TCGA-PA-A5YG-01 TCGA-OR-A5KV-01 TCGA-OR-A5L3-01 TCGA-OR-A5JT-01 TCGA-PK-A5HC-01 TCGA-OR-A5JS-01 TCGA-OR-A5KQ-01 TCGA-OR-A5JO-01 TCGA-P6-A5OH-01 TCGA-OR-A5J7-01
ENTITY_STABLE_ID NAME DESCRIPTION TCGA-OR-A5J1-01 TCGA-OR-A5J2-01 TCGA-OR-A5J3-01 TCGA-OR-A5J4-01 TCGA-OR-A5J5-01 TCGA-OR-A5J6-01 TCGA-OR-A5J7-01 TCGA-OR-A5J8-01 TCGA-OR-A5J9-01 TCGA-OR-A5JA-01 TCGA-OR-A5JB-01 TCGA-OR-A5JC-01 TCGA-OR-A5JD-01 TCGA-OR-A5JE-01 TCGA-OR-A5JF-01 TCGA-OR-A5JG-01 TCGA-OR-A5JH-01 TCGA-OR-A5JI-01 TCGA-OR-A5JJ-01 TCGA-OR-A5JK-01 TCGA-OR-A5JL-01 TCGA-OR-A5JM-01 TCGA-OR-A5JO-01 TCGA-OR-A5JP-01 TCGA-OR-A5JQ-01 TCGA-OR-A5JR-01 TCGA-OR-A5JS-01 TCGA-OR-A5JT-01 TCGA-OR-A5JU-01 TCGA-OR-A5JV-01 TCGA-OR-A5JW-01 TCGA-OR-A5JX-01 TCGA-OR-A5JY-01 TCGA-OR-A5JZ-01 TCGA-OR-A5K0-01 TCGA-OR-A5K1-01 TCGA-OR-A5K2-01 TCGA-OR-A5K3-01 TCGA-OR-A5K4-01 TCGA-OR-A5K5-01 TCGA-OR-A5K6-01 TCGA-OR-A5K8-01 TCGA-OR-A5K9-01 TCGA-OR-A5KB-01 TCGA-OR-A5KO-01 TCGA-OR-A5KP-01 TCGA-OR-A5KQ-01 TCGA-OR-A5KS-01 TCGA-OR-A5KT-01 TCGA-OR-A5KU-01 TCGA-OR-A5KV-01 TCGA-OR-A5KW-01 TCGA-OR-A5KX-01 TCGA-OR-A5KY-01 TCGA-OR-A5KZ-01 TCGA-OR-A5L1-01 TCGA-OR-A5L2-01 TCGA-OR-A5L3-01 TCGA-OR-A5L4-01 TCGA-OR-A5L5-01 TCGA-OR-A5L6-01 TCGA-OR-A5L8-01 TCGA-OR-A5L9-01 TCGA-OR-A5LA-01 TCGA-OR-A5LB-01 TCGA-OR-A5LC-01 TCGA-OR-A5LD-01 TCGA-OR-A5LE-01 TCGA-OR-A5LF-01 TCGA-OR-A5LG-01 TCGA-OR-A5LH-01 TCGA-OR-A5LI-01 TCGA-OR-A5LJ-01 TCGA-OR-A5LK-01 TCGA-OR-A5LL-01 TCGA-OR-A5LM-01 TCGA-OR-A5LN-01 TCGA-OR-A5LO-01 TCGA-OR-A5LP-01 TCGA-OR-A5LR-01 TCGA-OR-A5LS-01 TCGA-OR-A5LT-01 TCGA-OU-A5PI-01 TCGA-P6-A5OF-01 TCGA-OR-A5OG-01 TCGA-P6-A5OH-01 TCGA-PA-A5YG-01 TCGA-PK-A5H8-01 TCGA-PK-A5H9-01 TCGA-PK-A5HA-01 TCGA-PK-A5HB-01 TCGA-PK-A5HC-01
1p_status 1p Copy number status of 1p Unchanged Unchanged Unchanged NA Loss Unchanged Loss Unchanged Loss Loss Gain Loss Loss NA Unchanged Loss Loss Loss Unchanged Unchanged Unchanged Loss Unchanged Unchanged Loss Unchanged Loss Loss NA Loss Loss Loss NA Unchanged NA Unchanged Unchanged Unchanged Unchanged Loss NA Loss Loss Gain Unchanged Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Loss Unchanged Unchanged Loss Loss NA Loss Unchanged Loss Loss Unchanged Loss Unchanged Loss Unchanged Unchanged Loss Loss Unchanged Loss Unchanged Loss Loss Loss Loss Loss Unchanged Unchanged Loss Loss Loss NA NA Unchanged Unchanged NA Unchanged Loss Unchanged Unchanged
1q_status 1q Copy number status of 1q Unchanged Gain Unchanged Loss Loss Unchanged Unchanged Unchanged Loss Loss Unchanged Loss Loss Gain Unchanged Loss Loss Loss Unchanged Gain Unchanged NA Unchanged NA Loss Unchanged Gain Loss Unchanged Unchanged Loss Loss NA Unchanged NA Unchanged Unchanged Unchanged Unchanged Gain Unchanged Loss Gain Gain Unchanged Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Unchanged Unchanged Unchanged Loss Loss Unchanged Loss Unchanged Loss Loss Unchanged Loss Unchanged Gain Unchanged NA Loss Unchanged Unchanged Unchanged Unchanged Loss NA Loss Unchanged Loss Unchanged Unchanged Gain Loss Loss NA NA Unchanged Unchanged NA Unchanged Unchanged Unchanged Unchanged
2p_status 2p Copy number status of 2p Unchanged Unchanged Unchanged Loss Loss Gain Unchanged Unchanged Loss Loss Unchanged Loss Loss Gain Unchanged Loss Loss Unchanged Unchanged Unchanged Unchanged Gain Unchanged Gain Loss Unchanged Unchanged Loss Unchanged Loss Loss Loss NA Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Gain Unchanged Loss NA Unchanged Unchanged Gain Unchanged Loss Unchanged Loss Unchanged Unchanged Loss Unchanged Unchanged Loss NA Unchanged Loss Unchanged Unchanged Loss Unchanged Loss Unchanged Gain Gain Unchanged Loss Loss Unchanged Unchanged Unchanged Loss Loss Loss Loss Loss Unchanged Unchanged Loss Loss Loss NA NA Gain Unchanged NA Unchanged Loss Unchanged Loss
2q_status 2q Copy number status of 2q Unchanged Unchanged Unchanged NA Loss Gain NA Unchanged Loss Loss Unchanged Loss Loss Gain Unchanged Loss Loss Unchanged Unchanged Unchanged Unchanged NA Unchanged Gain Loss Unchanged Unchanged Loss Gain Loss Loss Loss NA Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Gain Unchanged Loss Unchanged NA Unchanged Gain Unchanged Loss Unchanged Loss Unchanged Unchanged Gain Unchanged Unchanged Loss NA Unchanged Loss Unchanged Unchanged Loss Unchanged Loss Unchanged Gain Gain Unchanged Loss Unchanged Unchanged Unchanged Unchanged Loss Unchanged Loss Loss Loss Unchanged Unchanged Loss Loss Loss NA NA Gain Unchanged NA Unchanged Loss NA Loss
3p_status 3p Copy number status of 3p Unchanged Gain Unchanged NA Loss Unchanged Loss Unchanged Loss Loss Loss Loss Gain Unchanged Unchanged Loss NA Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Loss Unchanged Gain Gain Loss Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Loss Loss NA Unchanged Loss Unchanged Unchanged Unchanged Loss Unchanged Unchanged Unchanged Unchanged Unchanged Loss Gain Unchanged Loss Unchanged Loss Unchanged Unchanged Loss Unchanged Unchanged Unchanged Unchanged Loss Unchanged Unchanged Loss Gain Gain Loss Loss Unchanged Loss Unchanged Unchanged Loss Unchanged Loss NA NA Unchanged Unchanged NA Unchanged Unchanged Loss Unchanged
3q_status 3q Copy number status of 3q Unchanged Gain Unchanged Unchanged Loss Loss NA Unchanged Loss Loss NA Loss Gain Unchanged Unchanged Loss Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Loss Unchanged Gain Gain Loss Unchanged Unchanged Loss Unchanged NA Unchanged NA Unchanged Unchanged Unchanged Unchanged Gain Unchanged Loss Loss Gain NA Loss Unchanged Unchanged Unchanged Loss Unchanged Unchanged Unchanged Unchanged Unchanged Loss NA Unchanged Loss Unchanged NA Unchanged Unchanged Loss Unchanged Unchanged Unchanged Loss Loss Unchanged Unchanged Loss Gain Gain Loss Loss Unchanged Loss Unchanged Unchanged Gain Unchanged Unchanged NA NA NA NA NA Unchanged Unchanged Loss Loss
4p_status 4p Copy number status of 4p Unchanged Unchanged Unchanged Unchanged Gain Unchanged Unchanged Unchanged Gain NA Loss Unchanged Gain Unchanged Gain Loss Unchanged Gain Gain Gain Gain Unchanged Unchanged NA Unchanged Gain Unchanged Gain Unchanged Gain Unchanged Unchanged NA Unchanged Unchanged Unchanged Loss Gain Gain Unchanged Unchanged Unchanged Unchanged Unchanged Gain Unchanged Unchanged Unchanged Unchanged Gain Unchanged Gain Unchanged Unchanged Unchanged Gain NA Unchanged Loss Unchanged Unchanged Loss Unchanged Gain Gain Unchanged Unchanged Unchanged Gain Unchanged Gain Loss Unchanged Gain Unchanged NA Gain Loss Unchanged Unchanged Gain Gain Unchanged NA NA Unchanged Unchanged NA Unchanged NA Unchanged Unchanged
4q_status 4q Copy number status of 4q Unchanged Unchanged Unchanged NA Gain Unchanged Loss Unchanged Unchanged NA Loss Unchanged Gain Unchanged Gain Loss Unchanged Gain NA Gain Gain Loss Unchanged Unchanged Unchanged Gain Unchanged Gain Unchanged Gain Unchanged Unchanged Loss Unchanged Unchanged Unchanged Loss Unchanged Gain Unchanged Unchanged Unchanged Unchanged NA Gain Unchanged Unchanged Unchanged Unchanged Gain Unchanged NA Unchanged Unchanged Gain Gain Unchanged Unchanged Loss Unchanged Unchanged Loss Unchanged Gain Gain Unchanged Unchanged NA Gain NA Gain Loss Unchanged Gain Unchanged Gain Gain Gain Unchanged Unchanged NA Unchanged Unchanged NA NA Unchanged Unchanged NA Unchanged Unchanged NA NA
5p_status 5p Copy number status of 5p Loss Unchanged Gain Unchanged Gain Gain NA Gain Gain Gain Unchanged Gain Gain Gain Gain Gain Gain Gain Gain NA Gain NA Unchanged Unchanged Unchanged Gain Gain Gain Unchanged Gain NA NA Gain Gain Unchanged Gain NA Gain Gain Gain Unchanged Gain NA Gain Gain Unchanged Unchanged Gain Unchanged Gain Unchanged NA NA Unchanged Unchanged Gain Unchanged Unchanged Gain Gain Gain Gain Gain Gain Gain NA Unchanged Unchanged NA NA Gain Loss Gain Gain Loss Gain Gain Gain Gain Gain Gain Gain Unchanged NA NA Gain Gain NA Unchanged Unchanged Unchanged NA
5q_status 5q Copy number status of 5q Unchanged Unchanged Gain Unchanged Gain Gain Unchanged Unchanged Unchanged Gain Unchanged Gain Gain Gain Gain Gain Gain Gain Gain Gain Gain Unchanged Unchanged Unchanged Unchanged Gain Loss Gain Unchanged Gain Gain Gain NA NA NA Gain Unchanged Gain Gain Gain Unchanged Gain Unchanged NA Gain Unchanged Unchanged Gain Unchanged Gain Unchanged Gain Unchanged Gain Unchanged Gain Loss Unchanged Gain Gain Gain Gain Gain Gain Gain Gain Unchanged Unchanged Gain Unchanged Gain Loss Gain Gain NA Gain Gain Gain Gain Gain Gain Gain Gain NA NA Gain Gain NA Unchanged NA Unchanged Unchanged
6p_status 6p Copy number status of 6p Unchanged Unchanged Unchanged NA Loss Gain Unchanged NA Loss Gain Unchanged Gain Loss Gain Unchanged Loss Loss Unchanged Unchanged Unchanged Gain Gain Unchanged Unchanged Loss Unchanged Gain Loss Unchanged Loss Unchanged Unchanged Unchanged Unchanged NA Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Loss Unchanged Gain Gain Unchanged Unchanged Loss NA Loss Unchanged Unchanged Unchanged Unchanged Gain Loss NA Unchanged Unchanged Unchanged Unchanged Loss Unchanged Loss Unchanged Loss Unchanged Loss Loss Unchanged Unchanged Loss Unchanged Gain Unchanged Unchanged Gain Loss Unchanged Unchanged Loss Loss Loss NA NA Unchanged Unchanged NA Unchanged Unchanged Unchanged NA
6q_status 6q Copy number status of 6q Unchanged Unchanged Unchanged NA Loss Gain Loss NA Loss Gain Loss Gain Loss Gain Unchanged Loss Loss Unchanged Unchanged Unchanged Gain NA Unchanged Unchanged Loss Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Loss Unchanged Unchanged Unchanged Loss Unchanged Unchanged Unchanged Unchanged NA Unchanged Gain Gain Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Unchanged Unchanged Gain Loss Loss Unchanged Unchanged Unchanged Unchanged Loss Unchanged Loss Unchanged Loss Unchanged Gain Loss NA Unchanged Unchanged Unchanged Gain Unchanged Unchanged Gain Loss Unchanged Unchanged Loss Loss Loss NA NA Loss Unchanged NA Unchanged NA Unchanged Gain
7p_status 7p Copy number status of 7p Unchanged NA Gain Loss Unchanged Gain Unchanged Gain Loss Gain Unchanged Loss Gain Unchanged Gain Gain Unchanged Unchanged Gain Gain Gain Unchanged Unchanged Unchanged Unchanged Gain Gain Unchanged Unchanged Gain Unchanged Gain Gain Unchanged Unchanged Gain Unchanged Gain Unchanged Gain NA Unchanged Unchanged Loss Gain Unchanged Unchanged Gain Unchanged Unchanged Unchanged Gain Unchanged Gain Gain Unchanged Gain Unchanged Gain Unchanged Unchanged Unchanged Unchanged Gain Gain Gain NA NA Unchanged Unchanged Gain Loss Gain Gain Unchanged Gain Gain Gain Gain Unchanged Gain Loss Unchanged NA NA Unchanged Gain NA Unchanged Unchanged Unchanged Unchanged
7q_status 7q Copy number status of 7q Unchanged Gain Gain Loss Unchanged Gain Unchanged Gain Unchanged Gain Unchanged Loss Gain Loss Gain Gain Unchanged Unchanged Gain Gain Gain Loss Unchanged Unchanged Unchanged Gain Gain Unchanged Unchanged Gain Unchanged Gain NA Unchanged Unchanged Gain Unchanged Gain Unchanged NA NA Unchanged Unchanged Gain Gain Unchanged Unchanged Gain Unchanged Unchanged Unchanged Gain Unchanged Gain Gain Unchanged NA Unchanged Gain Unchanged Unchanged Unchanged Unchanged Gain Gain Gain NA Unchanged Unchanged Unchanged Gain Loss Gain Gain Unchanged Gain Gain NA Gain Unchanged Gain Loss Unchanged NA NA Unchanged Gain NA Unchanged Unchanged Unchanged NA
8p_status 8p Copy number status of 8p Unchanged Unchanged Unchanged NA Unchanged Gain Loss Unchanged Gain Loss Loss Gain Gain Unchanged Unchanged Loss Unchanged Unchanged Unchanged Gain Unchanged Gain Unchanged Gain Unchanged Gain Gain Gain Unchanged Gain Loss Gain Unchanged Gain Unchanged Gain Unchanged Unchanged Gain NA Unchanged Loss Gain Loss Gain Loss Unchanged Gain NA Unchanged Unchanged Gain Loss Unchanged Gain Unchanged NA Unchanged Loss NA Unchanged Gain Gain Gain Unchanged Gain NA Unchanged Gain Loss Unchanged Loss Unchanged Loss Loss Loss Gain Loss Unchanged Gain Loss Loss Loss NA NA Unchanged Unchanged NA Unchanged Unchanged Loss Loss
8q_status 8q Copy number status of 8q Unchanged Unchanged Unchanged NA Unchanged Gain Loss Unchanged Gain Loss NA Gain Gain Unchanged NA Loss Unchanged Unchanged Gain Gain Unchanged Gain Unchanged Gain Unchanged Gain Gain Gain Unchanged Gain Loss Gain Unchanged Gain Unchanged Gain Unchanged Unchanged Gain Gain Unchanged Loss Gain Gain Gain Loss Unchanged Gain Unchanged Unchanged Unchanged Gain Unchanged Unchanged Gain Unchanged Gain Unchanged Loss Gain Unchanged Gain Gain Gain Unchanged Gain Gain Unchanged Gain Unchanged Unchanged Loss NA Loss NA Loss Gain Loss Unchanged Gain Loss Loss Loss NA NA Unchanged Unchanged NA Unchanged Unchanged Loss Loss
9p_status 9p Copy number status of 9p Unchanged Unchanged Unchanged NA Gain Unchanged Loss Unchanged Loss NA Unchanged Loss Gain Unchanged Gain Gain Unchanged Unchanged Unchanged Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Loss Loss Unchanged Loss Unchanged Unchanged Loss Unchanged Loss Unchanged Loss Unchanged Unchanged Loss Loss Unchanged Unchanged Loss Gain NA Unchanged Unchanged Unchanged Loss Unchanged Unchanged Unchanged Gain NA Unchanged Loss Loss Loss Unchanged Unchanged Loss Unchanged Loss Unchanged Loss Unchanged Loss Loss NA Unchanged Unchanged Gain Loss Unchanged Loss Unchanged Loss Unchanged Unchanged Gain Gain Unchanged NA NA Unchanged Unchanged NA Unchanged Unchanged Unchanged NA
9q_status 9q Copy number status of 9q Unchanged Unchanged Unchanged NA Gain Unchanged Unchanged Gain Unchanged Gain Unchanged Loss Gain Gain Gain Gain Unchanged Unchanged Gain Unchanged Unchanged Unchanged Unchanged NA Unchanged Unchanged Gain Loss Unchanged NA Unchanged Unchanged NA Unchanged NA Unchanged Gain Unchanged Unchanged NA Unchanged Unchanged Unchanged Gain Gain Gain Unchanged Unchanged Unchanged Loss Unchanged Unchanged Unchanged Gain Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Loss Unchanged Loss Gain NA Unchanged Unchanged Loss Unchanged Unchanged Unchanged Gain Loss Unchanged Loss Unchanged Loss Unchanged Unchanged Gain Gain Unchanged NA NA NA Unchanged NA Unchanged Unchanged Unchanged Unchanged
10p_status 10p Copy number status of 10p Unchanged Gain Unchanged Loss Unchanged Unchanged Gain Unchanged Unchanged Loss Unchanged Unchanged Gain NA Gain Loss Loss Unchanged Unchanged Gain Unchanged Unchanged Unchanged Unchanged Loss Unchanged Unchanged Loss Unchanged Loss Unchanged Gain Loss Unchanged Unchanged Unchanged Gain Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Gain Gain Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Unchanged Gain Unchanged Loss NA Unchanged Loss Unchanged NA Unchanged Unchanged Loss Gain Gain Gain NA Loss Unchanged Unchanged NA Gain Loss Unchanged Loss Unchanged Gain Unchanged Unchanged Gain Unchanged Unchanged NA NA Unchanged Unchanged NA Unchanged Unchanged Unchanged Loss
10q_status 10q Copy number status of 10q Unchanged Gain Unchanged Loss Unchanged Unchanged NA Unchanged Unchanged Loss Unchanged Unchanged Gain Unchanged Gain Loss Loss Unchanged Unchanged Gain Unchanged Gain Unchanged Gain Loss Unchanged Unchanged Loss Unchanged Loss Unchanged Gain Loss Unchanged Unchanged Unchanged Gain Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged NA NA Gain Unchanged Loss Unchanged Loss Unchanged Unchanged Unchanged Gain Unchanged Loss Loss Unchanged Loss Unchanged Loss Unchanged Unchanged Loss Gain Gain Gain Unchanged Loss Unchanged Unchanged Unchanged Gain Loss Unchanged Loss Unchanged NA Unchanged Unchanged Gain Unchanged Unchanged NA NA NA Unchanged NA Unchanged Unchanged Unchanged Loss
11p_status 11p Copy number status of 11p Unchanged Unchanged Unchanged NA Loss Unchanged Loss Unchanged Loss Loss Unchanged Loss Loss Unchanged Unchanged Loss Loss Loss Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Loss Unchanged Gain Loss Unchanged Loss Loss Loss Loss Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Loss Loss Loss Loss Unchanged Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Unchanged Unchanged Unchanged Loss Gain Unchanged Loss Unchanged Loss Loss Unchanged Loss Unchanged Loss Gain Unchanged Loss Unchanged Unchanged Unchanged Unchanged Loss Unchanged Loss Loss Loss Unchanged Unchanged Loss Loss Loss NA NA Gain Unchanged NA Unchanged Loss Loss Loss
11q_status 11q Copy number status of 11q Unchanged Unchanged Unchanged Loss Loss Unchanged Unchanged Unchanged Loss Loss Unchanged Loss Loss Unchanged Unchanged Loss Loss Loss Unchanged Unchanged Unchanged Unchanged Unchanged NA Loss Unchanged Unchanged Loss Unchanged Loss Loss Unchanged Unchanged Unchanged NA Unchanged Unchanged Unchanged Unchanged Gain Loss Loss Loss Loss Unchanged Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Unchanged Unchanged Unchanged Loss Loss Unchanged Loss Unchanged Unchanged Loss Unchanged Loss Unchanged Loss Gain Unchanged Loss Unchanged Unchanged Unchanged Unchanged Loss Unchanged Loss Loss Loss Unchanged Unchanged Loss Loss Loss NA NA Unchanged Unchanged NA Unchanged Loss Loss Loss
12p_status 12p Copy number status of 12p Unchanged Gain Gain NA Gain Gain Unchanged NA Gain Gain Unchanged Gain Gain Gain Gain Gain Unchanged Gain Gain Gain Gain Gain Unchanged Gain Unchanged Gain Gain Gain Unchanged Gain Unchanged Gain Gain Gain Unchanged Gain Gain Gain Gain Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Gain Unchanged Gain Unchanged Gain Unchanged Gain Unchanged Gain Gain Gain Gain Unchanged Gain Gain Gain Unchanged Gain Gain Gain Gain Gain Unchanged Gain Loss Gain Unchanged Gain Gain Loss Gain Gain Gain Gain Gain Gain Gain Unchanged NA NA Unchanged Gain NA Unchanged Unchanged Loss Gain
12q_status 12q Copy number status of 12q Unchanged Gain Gain Gain Gain Gain Gain NA Gain Gain NA Gain Gain Gain Gain Gain Unchanged Gain Gain Gain Gain NA Unchanged Gain Unchanged Gain Gain Gain Unchanged Gain Unchanged Gain NA Gain Unchanged Gain Gain Gain Gain Gain Unchanged Unchanged Unchanged Unchanged Unchanged Gain Unchanged Gain NA Gain Unchanged Gain Gain Gain Gain Gain Gain Unchanged Gain Gain Gain Unchanged Gain Gain Gain Gain Gain Unchanged Gain Unchanged Gain Unchanged Gain Gain NA Gain Gain NA Gain Gain Gain Gain Unchanged NA NA Unchanged Gain NA Unchanged Unchanged Unchanged NA
13q_status 13q Copy number status of 13q Unchanged Gain Unchanged Loss Loss Unchanged Loss Unchanged NA NA Loss Loss Loss Loss Unchanged Loss Loss Loss Unchanged Unchanged Gain Unchanged Unchanged Loss Loss Unchanged Loss Loss Unchanged Loss Loss Unchanged NA Unchanged NA Unchanged Loss Unchanged Unchanged Loss Unchanged Unchanged Loss Loss Unchanged Loss Unchanged Loss Unchanged Loss Unchanged Gain Unchanged Unchanged Loss Loss Loss Unchanged Loss Unchanged Loss Loss Unchanged Loss Unchanged Gain Loss Unchanged Loss Unchanged Unchanged Loss Unchanged Loss Loss Unchanged Loss Loss Unchanged Unchanged Loss Loss Loss NA NA Loss Unchanged NA Unchanged Loss Loss Loss
14q_status 14q Copy number status of 14q Unchanged Unchanged Gain Unchanged Gain Loss Loss Unchanged Loss Unchanged Unchanged Unchanged Loss Gain Unchanged Gain Loss Unchanged Gain Unchanged Gain Loss Unchanged Gain Loss Unchanged Gain Loss Unchanged Loss Unchanged NA NA Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged NA Unchanged NA Gain Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged NA Unchanged Unchanged Loss NA Unchanged Gain Unchanged Loss Gain Unchanged Loss Gain NA Unchanged Unchanged Loss Unchanged Unchanged Unchanged Unchanged Loss Unchanged Unchanged Loss Gain Unchanged Unchanged Gain Loss Unchanged NA NA Unchanged Unchanged NA Unchanged Unchanged Unchanged Loss
15q_status 15q Copy number status of 15q Unchanged Unchanged Unchanged Loss Loss Unchanged Loss Unchanged Loss NA Unchanged Unchanged Loss Unchanged Unchanged Loss Loss Loss Unchanged Gain Gain Loss Unchanged NA Loss Unchanged Gain Loss Unchanged Loss Unchanged Gain NA Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged NA Unchanged Loss Loss Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Unchanged Gain Loss Unchanged Unchanged Loss Gain Unchanged Loss Unchanged Loss Loss Unchanged Loss Gain Unchanged Loss Unchanged Loss Unchanged Unchanged Unchanged Unchanged Loss Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Loss Loss Loss NA NA Loss Unchanged NA Unchanged Loss Unchanged Loss
16p_status 16p Copy number status of 16p Unchanged Unchanged Gain Loss Gain Unchanged Loss Unchanged Unchanged Gain Loss Unchanged Gain Unchanged Gain Gain Unchanged Gain Gain Gain Unchanged NA Unchanged Unchanged Unchanged Gain Gain Gain Unchanged Gain Unchanged Gain Loss Gain Unchanged Gain Unchanged Gain Gain Gain Unchanged Unchanged Unchanged Unchanged Gain Unchanged Unchanged Loss Unchanged Gain Unchanged Gain Unchanged Gain Gain Gain Unchanged Unchanged Gain Gain Gain Unchanged Gain Gain NA Gain Gain Unchanged Gain Unchanged Unchanged Gain Unchanged Loss Unchanged Gain Unchanged Loss Gain Gain Gain Unchanged Unchanged NA NA Unchanged Gain NA Unchanged Unchanged Unchanged Gain
16q_status 16q Copy number status of 16q Unchanged Unchanged Gain NA Gain Unchanged Loss Unchanged Unchanged Gain Unchanged Unchanged Gain Gain Gain Gain Unchanged Gain Gain Gain Unchanged Unchanged Unchanged Unchanged Unchanged Gain Gain Gain Unchanged Unchanged Unchanged Gain Loss Gain Loss Gain Unchanged Gain Gain Unchanged Unchanged Unchanged Unchanged NA Gain Unchanged Unchanged NA Unchanged Unchanged Unchanged Gain Unchanged Gain Gain Gain NA Unchanged Gain Gain Gain Unchanged Gain Gain Unchanged Gain NA Unchanged Gain NA Unchanged Loss Unchanged Loss Unchanged Gain Unchanged Unchanged Gain Gain Gain Unchanged Unchanged NA NA NA Gain NA Unchanged Unchanged NA NA
17p_status 17p Copy number status of 17p Unchanged Unchanged Unchanged Loss Loss Unchanged Loss Unchanged Loss Loss Loss Loss Gain Loss Unchanged Loss NA Unchanged Unchanged Unchanged Unchanged NA Unchanged Loss Unchanged Unchanged Gain Loss Unchanged Loss Loss Unchanged NA Unchanged Unchanged Unchanged Loss Unchanged Unchanged Loss Unchanged Loss Loss Unchanged Unchanged Loss Unchanged Loss NA Loss Unchanged Unchanged NA Unchanged Unchanged Loss NA Unchanged Loss Unchanged Loss Loss Unchanged Loss Unchanged Unchanged Unchanged Loss Loss Unchanged Unchanged NA Unchanged Loss NA Loss Unchanged Loss Unchanged Unchanged Loss Gain Loss NA NA NA Unchanged NA Unchanged NA Loss Unchanged
17q_status 17q Copy number status of 17q Unchanged Unchanged Unchanged Loss Loss Unchanged Loss Unchanged Loss Loss Unchanged Loss Gain Unchanged Unchanged Loss Unchanged Unchanged Unchanged Unchanged Unchanged NA Unchanged NA Unchanged Unchanged Loss Loss Unchanged Loss Loss Unchanged Unchanged Unchanged Unchanged Unchanged NA Unchanged Unchanged Unchanged NA Loss Loss Unchanged Unchanged NA Unchanged Loss NA NA Unchanged Unchanged Unchanged Unchanged Unchanged Loss Gain Unchanged Loss Unchanged Loss Loss Unchanged Loss Unchanged Unchanged NA Loss Loss NA Unchanged Unchanged Unchanged Loss Unchanged Loss Unchanged Loss Unchanged Unchanged Loss Gain Loss NA NA NA Unchanged NA Unchanged NA Loss Loss
18p_status 18p Copy number status of 18p Unchanged Unchanged Unchanged Loss Loss Loss Loss Gain Loss Loss Loss Loss Loss Unchanged Unchanged Loss Loss Loss Unchanged Unchanged Unchanged Unchanged Unchanged Loss Loss Unchanged Loss Loss Unchanged Loss Loss Loss Loss Unchanged Unchanged Unchanged Loss Unchanged Unchanged Loss Unchanged Loss Unchanged Unchanged Unchanged Loss Unchanged Loss Loss Loss Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Gain Unchanged Loss Unchanged Loss Loss Unchanged Loss Unchanged Unchanged Gain Unchanged Loss Unchanged Unchanged Unchanged Unchanged Loss Loss Loss Loss Loss Unchanged Unchanged Loss Loss Loss NA NA Unchanged Unchanged NA Unchanged Loss Loss Unchanged
18q_status 18q Copy number status of 18q Unchanged Unchanged Unchanged Loss Loss Loss Loss Gain Loss Loss Loss Loss Loss Unchanged Unchanged Loss Loss Loss Unchanged Unchanged Unchanged NA Unchanged Loss Loss Unchanged Loss Loss Unchanged Loss Loss Loss Unchanged Unchanged Unchanged Unchanged Loss Unchanged Unchanged Unchanged Unchanged Loss Unchanged Unchanged Unchanged Loss Unchanged Loss Unchanged Loss Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged NA Unchanged Loss Unchanged Loss Loss Unchanged Loss Unchanged Unchanged Gain Unchanged Loss NA Unchanged Unchanged Unchanged Loss NA Loss Loss Loss Unchanged Unchanged Loss Loss Loss NA NA Unchanged Unchanged NA Unchanged Loss Loss NA
19p_status 19p Copy number status of 19p Unchanged Unchanged Gain NA Gain Gain Gain Unchanged Gain Gain Loss Gain Gain Gain Gain Gain Unchanged Gain Gain Gain Unchanged Gain Unchanged Gain Unchanged Unchanged Gain Loss Unchanged NA Unchanged Gain Unchanged Unchanged Gain Unchanged Gain Gain Unchanged Gain Unchanged Unchanged Gain Loss Gain Gain Unchanged Loss Unchanged Gain Unchanged Gain Unchanged Gain Gain Gain Gain Unchanged Gain Unchanged Unchanged Gain Unchanged Loss Gain Gain Gain Unchanged Loss Unchanged Unchanged Loss NA Gain Unchanged Gain Gain Gain Gain Unchanged Gain Gain NA NA NA NA Gain NA Unchanged Unchanged Unchanged Gain
19q_status 19q Copy number status of 19q Loss Unchanged Gain Gain Gain Gain Gain Unchanged Gain Gain Unchanged Gain Gain Gain Gain Gain Unchanged Gain Gain Gain Unchanged NA Unchanged Gain Unchanged Unchanged Gain Loss Unchanged Unchanged Unchanged Gain Unchanged Unchanged Unchanged Unchanged Gain Gain Unchanged Gain Unchanged Unchanged Gain Loss Gain Gain Unchanged Loss NA Gain Unchanged NA Gain Gain Gain Gain NA NA Gain Unchanged Unchanged Gain NA Loss Gain Gain Gain Unchanged Loss Unchanged Unchanged NA Gain Gain NA Gain Unchanged Gain Gain Unchanged Gain Gain Unchanged NA NA Gain Gain NA Unchanged Unchanged Unchanged Unchanged
20p_status 20p Copy number status of 20p Unchanged Unchanged Unchanged Unchanged Loss Gain Loss Unchanged Unchanged Loss Loss Unchanged Gain Gain Gain Gain Unchanged Gain NA Gain Unchanged Loss Unchanged Unchanged Unchanged Gain Loss Gain Unchanged Gain Unchanged Gain Unchanged Gain Loss Gain Unchanged Gain Gain Unchanged Unchanged Unchanged Loss Loss Unchanged Loss Unchanged NA Unchanged Gain Unchanged Unchanged Gain Gain Gain Gain NA Unchanged Gain Gain Gain Loss Gain Gain Gain Gain Unchanged Unchanged Unchanged Unchanged Unchanged Unchanged Gain Gain Unchanged Gain Gain Loss Gain Gain Unchanged Gain Unchanged NA NA Gain Gain NA Unchanged Unchanged Loss Loss
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#Patient Identifier Subtype TCGA PanCanAtlas Cancer Type Acronym Other Patient ID Diagnosis Age Sex Neoplasm Disease Stage American Joint Committee on Cancer Code American Joint Committee on Cancer Publication Version Type Last Communication Contact from Initial Pathologic Diagnosis Date Birth from Initial Pathologic Diagnosis Date Last Alive Less Initial Pathologic Diagnosis Date Calculated Day Value Ethnicity Category Form completion date Neoadjuvant Therapy Type Administered Prior To Resection Text ICD-10 Classification International Classification of Diseases for Oncology, Third Edition ICD-O-3 Histology Code International Classification of Diseases for Oncology, Third Edition ICD-O-3 Site Code Informed consent verified New Neoplasm Event Post Initial Therapy Indicator American Joint Committee on Cancer Metastasis Stage Code Neoplasm Disease Lymph Node Stage American Joint Committee on Cancer Code American Joint Committee on Cancer Tumor Stage Code Person Neoplasm Cancer Status Primary Lymph Node Presentation Assessment Prior Diagnosis Race Category Radiation Therapy Patient Weight In PanCan Pathway Analysis Overall Survival Status Overall Survival (Months) Disease-specific Survival status Months of disease-specific survival Disease Free Status Disease Free (Months) Progression Free Status Progress Free Survival (Months) Genetic Ancestry Label
#Identifier to uniquely specify a patient. Subtype Text field to hold cancer type acronym used by TCGA PanCanAtlas. Legacy DMP patient identifier (DMPnnnn) Age at which a condition or disease was first diagnosed. Sex The extent of a cancer, especially whether the disease has spread from the original site to other parts of the body based on AJCC staging criteria. The version or edition of the American Joint Committee on Cancer Cancer Staging Handbooks, a publication by the group formed for the purpose of developing a system of clinical staging for cancer that is acceptable to the American medical profession and is compatible with other accepted classifications. Time interval from the date of last followup to the date of initial pathologic diagnosis, represented as a calculated number of days.. Time interval from a person's date of birth to the date of initial pathologic diagnosis, represented as a calculated number of days. Time interval from the last day on which a person is known to be alive to the date of initial pathologic diagnosis, represented as a calculated number of days. The text for reporting information about ethnicity. Form completion date Text term to describe the patient's history of neoadjuvant treatment and the kind of treatment given prior to resection of the tumor. 10th revision of the International Statistical Classification of Diseases and Related Health Problems. The third edition of the International Classification of Diseases for Oncology, published in 2000, used principally in tumor and cancer registries for coding the site (topography) and the histology (morphology) of neoplasms._The study of the structure of the cells and their arrangement to constitute tissues and, finally, the association among these to form organs. In pathology, the microscopic process of identifying normal and abnormal morphologic characteristics in tissues, by employing various cytochemical and immunocytochemical stains._A system of numbered categories for representation of data. The third edition of the International Classification of Diseases for Oncology, published in 2000, used principally in tumor and cancer registries for coding the site (topography) and the histology (morphology) of neoplasms._The description of an anatomical region or of a body part._Named locations of, or within, the body._A system of numbered categories for representation of data. Informed consent verified Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment. Code to represent the defined absence or presence of distant spread or metastases (M) to locations via vascular channels or lymphatics beyond the regional lymph nodes, using criteria established by the American Joint Committee on Cancer (AJCC). The codes that represent the stage of cancer based on the nodes present (N stage) according to criteria based on multiple editions of the AJCC's Cancer Staging Manual. Code of pathological T (primary tumor) to define the size or contiguous extension of the primary tumor (T), using staging criteria from the American Joint Committee on Cancer (AJCC). Person neoplasm cancer status. Primary lymph node presentation assessment. Prior diagnosis. The text for reporting information about race. Radiation Therapy. Weight measured in kilograms. Patient Part of PanCan Pathway Analysis Overall patient survival status. Overall survival in months since initial diagonosis. The time period usually begins at the time of diagnosis or at the start of treatment and ends at the time of death. The time period (months) usually begins at the time of diagnosis or at the start of treatment and ends at the time of death. Disease free status since initial treatment. Disease free (months) since initial treatment. Progression Free Status Progress Free Survival (Months) Genetic ancestries were determined using five different methods as described in Carrot-Zhang et al (2020). These consensus calls were created based on the ancestral population that received the majority of assignments for each patient.
#STRING STRING STRING STRING NUMBER STRING STRING STRING NUMBER NUMBER NUMBER STRING STRING STRING STRING STRING STRING STRING STRING STRING STRING STRING STRING STRING STRING STRING STRING NUMBER STRING STRING NUMBER STRING NUMBER STRING NUMBER STRING NUMBER STRING
#1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9 1 1 1 1 1 1 1 1
PATIENT_ID SUBTYPE CANCER_TYPE_ACRONYM OTHER_PATIENT_ID AGE SEX AJCC_PATHOLOGIC_TUMOR_STAGE AJCC_STAGING_EDITION DAYS_LAST_FOLLOWUP DAYS_TO_BIRTH DAYS_TO_INITIAL_PATHOLOGIC_DIAGNOSIS ETHNICITY FORM_COMPLETION_DATE HISTORY_NEOADJUVANT_TRTYN ICD_10 ICD_O_3_HISTOLOGY ICD_O_3_SITE INFORMED_CONSENT_VERIFIED NEW_TUMOR_EVENT_AFTER_INITIAL_TREATMENT PATH_M_STAGE PATH_N_STAGE PATH_T_STAGE PERSON_NEOPLASM_CANCER_STATUS PRIMARY_LYMPH_NODE_PRESENTATION_ASSESSMENT PRIOR_DX RACE RADIATION_THERAPY WEIGHT IN_PANCANPATHWAYS_FREEZE OS_STATUS OS_MONTHS DSS_STATUS DSS_MONTHS DFS_STATUS DFS_MONTHS PFS_STATUS PFS_MONTHS GENETIC_ANCESTRY_LABEL
TCGA-OR-A5J1 ACC ACC B3164F7B-C826-4E08-9EE6-8FF96D29B913 58 Male STAGE II -21496 0 4/2/14 No C74.0 8370/1 C74.0 Yes Yes N0 T2 With Tumor No White No Yes 1:DECEASED 44.54745701 1:DEAD WITH TUMOR 44.54745701 1:Recurred/Progressed 24.78876944 1:PROGRESSION 24.78876944 EUR

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